Wall clock time and date at job start Tue Mar 31 2020 21:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47275 * 2 1 4 4 O 1.21281 * 119.99775 * 359.97438 * 3 2 1 5 5 N 1.34767 * 120.00110 * 179.97438 * 3 2 1 6 6 C 1.46923 * 120.63675 * 0.02562 * 5 3 2 7 7 C 1.53184 * 108.78281 * 126.36518 * 6 5 3 8 8 C 1.53048 * 109.31142 * 54.63906 * 7 6 5 9 9 C 1.53040 * 109.53579 * 298.63740 * 8 7 6 10 10 H 1.08996 * 109.52443 * 301.39657 * 9 8 7 11 11 C 1.50704 * 109.49650 * 181.31372 * 9 8 7 12 12 O 1.21278 * 120.00238 * 0.16248 * 11 9 8 13 13 N 1.34776 * 119.99711 * 180.16512 * 11 9 8 14 14 C 1.46504 * 119.99846 * 180.02562 * 13 11 9 15 15 C 1.52998 * 109.47029 * 179.97438 * 14 13 11 16 16 H 1.08993 * 110.88613 * 57.43058 * 15 14 13 17 17 C 1.55165 * 111.03477 * 181.33320 * 15 14 13 18 18 C 1.54327 * 103.02096 * 153.39839 * 17 15 14 19 19 N 1.47032 * 107.26586 * 338.13514 * 18 17 15 20 20 C 1.36931 * 125.64719 * 178.85180 * 19 18 17 21 21 H 1.08002 * 120.00103 * 179.69760 * 20 19 18 22 22 C 1.38812 * 120.00429 * 359.69263 * 20 19 18 23 23 N 1.31624 * 119.99535 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00484 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47326 * 270.00576 * 24 22 20 26 26 H 1.48506 * 109.46545 * 30.00326 * 24 22 20 27 27 H 1.48498 * 109.47210 * 150.00037 * 24 22 20 28 28 C 1.47428 * 108.70123 * 358.58848 * 19 18 17 29 29 C 1.46931 * 120.63268 * 179.97438 * 5 3 2 30 30 H 1.09005 * 109.47203 * 60.00548 * 1 2 3 31 31 H 1.09008 * 109.47107 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47569 * 300.00314 * 1 2 3 33 33 H 1.08994 * 109.47569 * 239.99686 * 2 1 3 34 34 H 1.09003 * 109.46996 * 119.99943 * 2 1 3 35 35 H 1.09001 * 109.59094 * 246.16507 * 6 5 3 36 36 H 1.09005 * 109.58410 * 6.43710 * 6 5 3 37 37 H 1.09000 * 109.50584 * 174.58925 * 7 6 5 38 38 H 1.08996 * 109.50186 * 294.66027 * 7 6 5 39 39 H 1.08990 * 109.46319 * 178.61319 * 8 7 6 40 40 H 1.09001 * 109.45543 * 58.65334 * 8 7 6 41 41 H 0.96997 * 120.00501 * 359.97438 * 13 11 9 42 42 H 1.09002 * 109.46776 * 59.99438 * 14 13 11 43 43 H 1.08993 * 109.46958 * 299.99975 * 14 13 11 44 44 H 1.09004 * 110.71558 * 271.95396 * 17 15 14 45 45 H 1.08999 * 110.71844 * 35.04546 * 17 15 14 46 46 H 1.09006 * 109.99153 * 218.66631 * 18 17 15 47 47 H 1.08994 * 109.78600 * 97.49281 * 18 17 15 48 48 H 0.97005 * 119.99717 * 179.97438 * 23 22 20 49 49 H 1.08997 * 110.36556 * 143.19064 * 28 19 18 50 50 H 1.08991 * 110.36533 * 265.40365 * 28 19 18 51 51 H 1.09008 * 109.58429 * 113.83960 * 29 5 3 52 52 H 1.09008 * 109.58307 * 353.42248 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3573 1.6671 0.0005 6 6 4.3244 0.5610 0.0005 7 6 5.2968 0.7561 -1.1669 8 6 5.9312 2.1455 -1.0705 9 6 4.8400 3.2142 -1.1669 10 1 4.3036 3.1031 -2.1093 11 6 5.4688 4.5823 -1.1043 12 8 6.6718 4.6924 -0.9963 13 7 4.6944 5.6834 -1.1682 14 6 5.3057 7.0135 -1.1078 15 6 4.2140 8.0813 -1.2007 16 1 3.4794 7.9562 -0.4052 17 6 4.8256 9.5070 -1.1738 18 6 3.7800 10.3484 -1.9356 19 7 3.0015 9.4236 -2.7725 20 6 1.9582 9.7714 -3.5883 21 1 1.4515 9.0150 -4.1693 22 6 1.5516 11.0962 -3.6687 23 7 2.1694 12.0182 -2.9609 24 14 0.1288 11.5708 -4.7821 25 1 0.6477 11.9075 -6.1321 26 1 -0.8194 10.4326 -4.8859 27 1 -0.5730 12.7495 -4.2134 28 6 3.5342 8.0608 -2.5926 29 6 3.8624 3.0469 0.0000 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 4.8771 0.5587 0.9400 36 1 3.7967 -0.3858 -0.1151 37 1 6.0769 -0.0039 -1.1217 38 1 4.7564 0.6671 -2.1093 39 1 6.6420 2.2776 -1.8861 40 1 6.4507 2.2420 -0.1171 41 1 3.7323 5.5954 -1.2548 42 1 6.0010 7.1318 -1.9390 43 1 5.8432 7.1238 -0.1661 44 1 4.9353 9.8602 -0.1484 45 1 5.7849 9.5249 -1.6910 46 1 4.2806 11.0850 -2.5641 47 1 3.1218 10.8497 -1.2260 48 1 1.8855 12.9441 -3.0174 49 1 2.7242 7.3317 -2.6084 50 1 4.2638 7.8331 -3.3697 51 1 4.3773 3.2479 0.9395 52 1 3.0299 3.7406 -0.1185 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028562949.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:50 Heat of formation + Delta-G solvation = -63.481676 kcal Electronic energy + Delta-G solvation = -29842.469643 eV Core-core repulsion = 25841.784753 eV Total energy + Delta-G solvation = -4000.684890 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.85986 -39.67556 -37.85669 -37.26013 -34.69220 -33.67915 -32.81940 -32.56696 -31.60015 -29.72303 -28.24359 -26.37284 -25.80247 -24.79479 -23.62614 -23.29122 -21.58981 -20.42255 -19.92008 -19.54270 -19.24848 -17.81055 -17.03268 -16.61498 -16.38407 -16.15149 -15.93700 -15.43797 -14.97123 -14.62823 -14.58948 -14.27729 -14.07958 -13.94983 -13.68253 -13.55723 -13.09781 -13.02588 -12.92020 -12.50491 -12.33808 -12.14055 -12.00168 -11.82941 -11.71124 -11.53209 -11.41142 -11.34303 -11.31700 -11.01128 -10.88123 -10.77993 -10.42708 -10.17740 -10.10449 -9.98243 -9.86070 -9.68614 -9.63406 -9.05774 -8.96153 -8.58341 -6.81605 -5.69559 -3.03037 2.28384 2.45348 2.69738 3.20301 3.41610 3.46492 3.48513 4.06314 4.28873 4.41005 4.47503 4.51118 4.55722 4.66310 4.70892 4.74690 4.87514 5.00341 5.06797 5.13158 5.24103 5.25661 5.30623 5.39272 5.41513 5.43983 5.47462 5.55593 5.57830 5.58921 5.69954 5.79161 5.89826 5.90863 5.96028 6.03609 6.07120 6.08500 6.35222 6.44378 6.51836 6.54618 6.69654 6.92572 6.99780 7.51901 7.57704 7.64773 7.84375 7.84465 8.19660 8.27845 9.23951 9.84298 10.50324 11.42256 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011951 B = 0.002521 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.291212 B =11101.889527 C =12856.338903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.142 4.142 3 C 0.512 3.488 4 O -0.534 6.534 5 N -0.614 5.614 6 C 0.104 3.896 7 C -0.136 4.136 8 C -0.099 4.099 9 C -0.123 4.123 10 H 0.101 0.899 11 C 0.518 3.482 12 O -0.542 6.542 13 N -0.722 5.722 14 C 0.132 3.868 15 C -0.118 4.118 16 H 0.080 0.920 17 C -0.134 4.134 18 C 0.177 3.823 19 N -0.606 5.606 20 C -0.228 4.228 21 H 0.077 0.923 22 C -0.009 4.009 23 N -0.922 5.922 24 Si 0.912 3.088 25 H -0.289 1.289 26 H -0.281 1.281 27 H -0.290 1.290 28 C 0.142 3.858 29 C 0.121 3.879 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.403 0.597 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.042 0.958 47 H 0.047 0.953 48 H 0.252 0.748 49 H 0.035 0.965 50 H 0.018 0.982 51 H 0.073 0.927 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.442 -27.512 8.103 29.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.182 4.182 3 C 0.300 3.700 4 O -0.410 6.410 5 N -0.349 5.349 6 C -0.018 4.018 7 C -0.174 4.174 8 C -0.137 4.137 9 C -0.145 4.145 10 H 0.119 0.881 11 C 0.303 3.697 12 O -0.419 6.419 13 N -0.373 5.373 14 C 0.009 3.991 15 C -0.138 4.138 16 H 0.098 0.902 17 C -0.173 4.173 18 C 0.053 3.947 19 N -0.332 5.332 20 C -0.356 4.356 21 H 0.095 0.905 22 C -0.205 4.205 23 N -0.570 5.570 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.207 1.207 27 H -0.217 1.217 28 C 0.016 3.984 29 C -0.002 4.002 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.238 0.762 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.061 0.939 47 H 0.065 0.935 48 H 0.062 0.938 49 H 0.054 0.946 50 H 0.036 0.964 51 H 0.092 0.908 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.740 -26.709 8.130 28.503 hybrid contribution -1.060 0.335 -0.713 1.321 sum 4.679 -26.375 7.417 27.795 Atomic orbital electron populations 1.21556 0.92853 1.01641 1.03617 1.21661 0.98752 0.93690 1.04110 1.20867 0.81439 0.92111 0.75560 1.90743 1.54614 1.46534 1.49069 1.48126 1.05762 1.06944 1.74034 1.21824 0.91123 0.89590 0.99300 1.21960 0.98893 0.97865 0.98708 1.21327 0.96444 0.91963 1.03996 1.21720 0.98170 0.93293 1.01327 0.88051 1.20328 0.87186 0.85848 0.76306 1.90695 1.14510 1.87247 1.49486 1.46160 1.11056 1.06218 1.73878 1.21408 0.95726 0.80131 1.01852 1.22617 0.96783 0.94520 0.99883 0.90174 1.22858 0.99655 0.94330 1.00498 1.21150 0.90397 0.90564 0.92629 1.44481 1.36579 1.01247 1.50933 1.19058 1.06324 0.92736 1.17532 0.90493 1.24807 0.99744 0.95819 1.00150 1.69971 1.42628 1.00706 1.43703 0.86114 0.81779 0.77853 0.80005 1.21633 1.20671 1.21668 1.21557 0.95298 0.89065 0.92496 1.21496 0.97555 0.83863 0.97322 0.91812 0.92045 0.91888 0.88884 0.88963 0.90974 0.89403 0.90036 0.91215 0.90527 0.90846 0.76214 0.91358 0.91644 0.91982 0.92263 0.93939 0.93500 0.93771 0.94648 0.96391 0.90840 0.88243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.20 37.15 0.34 -0.62 16 2 C -0.14 -0.84 4.77 -27.88 -0.13 -0.97 16 3 C 0.51 4.96 7.70 -10.99 -0.08 4.87 16 4 O -0.53 -7.53 15.39 5.56 0.09 -7.44 16 5 N -0.61 -4.96 2.97 -172.79 -0.51 -5.48 16 6 C 0.10 0.51 6.34 -3.72 -0.02 0.49 16 7 C -0.14 -0.71 6.08 -26.61 -0.16 -0.87 16 8 C -0.10 -0.80 4.46 -26.69 -0.12 -0.92 16 9 C -0.12 -1.16 2.68 -91.67 -0.25 -1.41 16 10 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 11 C 0.52 6.60 7.16 -10.98 -0.08 6.52 16 12 O -0.54 -8.69 15.98 5.56 0.09 -8.60 16 13 N -0.72 -9.22 5.31 -60.29 -0.32 -9.54 16 14 C 0.13 1.92 5.13 -4.04 -0.02 1.90 16 15 C -0.12 -1.99 3.11 -88.47 -0.27 -2.27 16 16 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 17 C -0.13 -2.48 6.42 -24.89 -0.16 -2.64 16 18 C 0.18 4.34 5.38 -3.06 -0.02 4.32 16 19 N -0.61 -15.65 3.39 -170.06 -0.58 -16.23 16 20 C -0.23 -6.46 10.28 -15.06 -0.15 -6.62 16 21 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 22 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 23 N -0.92 -27.48 10.31 55.49 0.57 -26.91 16 24 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 C 0.14 2.91 6.40 -2.53 -0.02 2.89 16 29 C 0.12 1.13 5.57 -3.73 -0.02 1.11 16 30 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 31 H 0.06 0.30 8.14 -51.92 -0.42 -0.13 16 32 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 33 H 0.09 0.37 7.69 -51.93 -0.40 -0.02 16 34 H 0.09 0.36 7.94 -51.93 -0.41 -0.05 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.09 0.24 5.93 -51.93 -0.31 -0.07 16 37 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.69 8.06 -51.93 -0.42 0.27 16 40 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 41 H 0.40 4.74 7.88 -40.82 -0.32 4.42 16 42 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.06 1.03 8.04 -51.93 -0.42 0.62 16 46 H 0.04 1.15 7.52 -51.93 -0.39 0.76 16 47 H 0.05 1.27 7.37 -51.93 -0.38 0.88 16 48 H 0.25 7.28 8.31 -40.82 -0.34 6.95 16 49 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.02 0.38 8.01 -51.93 -0.42 -0.04 16 51 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 52 H 0.10 1.08 6.60 -51.92 -0.34 0.74 16 LS Contribution 405.41 15.07 6.11 6.11 Total: -1.00 -35.09 405.41 -10.11 -45.20 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -9.27 Total: 0.06 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -1.26 Total: 5.43 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: -0.84 Total: -58.16 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.17 Total: -16.05 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.09 -10.11 -45.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028562949.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.285 kcal (2) G-P(sol) polarization free energy of solvation -35.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds