Wall clock time and date at job start Tue Mar 31 2020 21:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.47238 * 2 1 4 4 O 1.21287 * 119.99729 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00364 * 179.97438 * 3 2 1 6 6 C 1.46923 * 120.62601 * 359.97438 * 5 3 2 7 7 C 1.53191 * 108.77702 * 126.41507 * 6 5 3 8 8 C 1.53036 * 109.33946 * 54.61656 * 7 6 5 9 9 C 1.53044 * 109.53949 * 298.68242 * 8 7 6 10 10 H 1.09001 * 109.50106 * 301.35141 * 9 8 7 11 11 C 1.50698 * 109.49969 * 181.28162 * 9 8 7 12 12 O 1.21278 * 119.99851 * 342.48945 * 11 9 8 13 13 N 1.34772 * 120.00010 * 162.48092 * 11 9 8 14 14 C 1.47426 * 125.64906 * 5.27208 * 13 11 9 15 15 C 1.54913 * 104.83185 * 155.82417 * 14 13 11 16 16 C 1.55151 * 101.58237 * 37.00758 * 15 14 13 17 17 H 1.08992 * 110.72061 * 206.13173 * 16 15 14 18 18 N 1.46507 * 110.72012 * 82.86360 * 16 15 14 19 19 C 1.36929 * 120.00292 * 88.27740 * 18 16 15 20 20 H 1.08007 * 120.00015 * 0.02562 * 19 18 16 21 21 C 1.38816 * 120.00149 * 180.02562 * 19 18 16 22 22 N 1.31618 * 119.99902 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99812 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47154 * 90.00219 * 23 21 19 25 25 H 1.48499 * 109.46776 * 209.99637 * 23 21 19 26 26 H 1.48494 * 109.47318 * 329.99927 * 23 21 19 27 27 C 1.47026 * 125.64703 * 185.21612 * 13 11 9 28 28 H 1.08994 * 109.88004 * 300.52008 * 27 13 11 29 29 C 1.52993 * 109.88249 * 61.69045 * 27 13 11 30 30 C 1.46922 * 120.63252 * 179.97438 * 5 3 2 31 31 H 1.08998 * 109.47476 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47285 * 300.00398 * 1 2 3 33 33 H 1.09000 * 109.47010 * 60.00479 * 1 2 3 34 34 H 1.08994 * 109.47175 * 239.99217 * 2 1 3 35 35 H 1.09003 * 109.46543 * 119.99675 * 2 1 3 36 36 H 1.09006 * 109.58684 * 246.20138 * 6 5 3 37 37 H 1.08999 * 109.58934 * 6.62771 * 6 5 3 38 38 H 1.09004 * 109.50279 * 174.58711 * 7 6 5 39 39 H 1.09006 * 109.49518 * 294.64634 * 7 6 5 40 40 H 1.09007 * 109.48541 * 178.65389 * 8 7 6 41 41 H 1.08996 * 109.43421 * 58.68672 * 8 7 6 42 42 H 1.08999 * 110.36535 * 36.98421 * 14 13 11 43 43 H 1.09004 * 110.46183 * 274.71121 * 14 13 11 44 44 H 1.08994 * 111.00296 * 278.93308 * 15 14 13 45 45 H 1.09003 * 111.03396 * 155.10135 * 15 14 13 46 46 H 0.97007 * 119.99713 * 268.28679 * 18 16 15 47 47 H 0.97001 * 120.00134 * 180.02562 * 22 21 19 48 48 H 1.09000 * 109.47036 * 170.29332 * 29 27 13 49 49 H 1.08995 * 109.47409 * 290.29756 * 29 27 13 50 50 H 1.09001 * 109.47221 * 50.29951 * 29 27 13 51 51 H 1.09000 * 109.58316 * 113.80185 * 30 5 3 52 52 H 1.08996 * 109.58509 * 353.37823 * 30 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 -0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.3243 0.5609 0.0017 7 6 5.2977 0.7556 -1.1651 8 6 5.9321 2.1450 -1.0695 9 6 4.8409 3.2137 -1.1664 10 1 4.3052 3.1023 -2.1092 11 6 5.4696 4.5818 -1.1038 12 8 6.5993 4.7112 -0.6818 13 7 4.7767 5.6615 -1.5168 14 6 3.3665 5.6645 -1.9467 15 6 2.8843 7.1182 -1.7143 16 6 4.1476 7.9312 -2.1022 17 1 4.1616 8.8914 -1.5866 18 7 4.2174 8.1196 -3.5534 19 6 3.6026 9.1963 -4.1345 20 1 3.0665 9.9070 -3.5229 21 6 3.6684 9.3744 -5.5096 22 7 3.0779 10.4097 -6.0680 23 14 4.5950 8.1448 -6.5674 24 1 3.6689 7.0680 -7.0010 25 1 5.1453 8.8349 -7.7615 26 1 5.7072 7.5541 -5.7806 27 6 5.3017 7.0315 -1.6122 28 1 5.6429 7.3667 -0.6328 29 6 6.4580 7.0771 -2.6130 30 6 3.8623 3.0468 0.0000 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8932 -0.5138 0.8901 36 1 4.8764 0.5591 0.9416 37 1 3.7969 -0.3856 -0.1166 38 1 6.0777 -0.0044 -1.1191 39 1 4.7579 0.6662 -2.1079 40 1 6.6430 2.2771 -1.8852 41 1 6.4513 2.2417 -0.1161 42 1 2.7839 4.9702 -1.3412 43 1 3.2893 5.4034 -3.0021 44 1 2.6212 7.2802 -0.6691 45 1 2.0468 7.3619 -2.3681 46 1 4.6991 7.4813 -4.1026 47 1 3.1235 10.5339 -7.0290 48 1 6.7284 8.1147 -2.8087 49 1 7.3175 6.5494 -2.1996 50 1 6.1519 6.5997 -3.5439 51 1 4.3766 3.2480 0.9397 52 1 3.0300 3.7404 -0.1193 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074665608.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:36 Heat of formation + Delta-G solvation = -56.258239 kcal Electronic energy + Delta-G solvation = -31160.200136 eV Core-core repulsion = 27159.828477 eV Total energy + Delta-G solvation = -4000.371658 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.89995 -39.89764 -38.12685 -37.04519 -34.16905 -33.61643 -32.79835 -32.10862 -31.23951 -30.84524 -29.25134 -26.35540 -25.46816 -25.06212 -23.58033 -23.20036 -22.54435 -21.20545 -19.59327 -19.23362 -18.62026 -17.89658 -17.55060 -16.85785 -16.46369 -16.10124 -15.90234 -15.21991 -14.92305 -14.48260 -14.43738 -14.14187 -14.07875 -13.76400 -13.61554 -13.35945 -13.10124 -13.01985 -12.84535 -12.68428 -12.49117 -12.42098 -12.12042 -11.93645 -11.76538 -11.57433 -11.51451 -11.32895 -11.28614 -11.13880 -11.09268 -10.92688 -10.78902 -10.67790 -10.30471 -10.14762 -10.08746 -9.63284 -9.56646 -8.99801 -8.98821 -8.43646 -7.34413 -5.82714 -3.18940 2.31174 2.49593 2.77425 3.14279 3.32447 3.35523 3.41352 4.10396 4.27707 4.47620 4.52030 4.53500 4.58883 4.69242 4.69637 4.74508 4.89901 4.98641 5.01936 5.10383 5.15006 5.21732 5.29502 5.31395 5.43183 5.43680 5.48229 5.53155 5.54842 5.59647 5.60231 5.63775 5.71667 5.78897 5.87400 5.90876 5.97992 6.03136 6.12214 6.18276 6.28134 6.37692 6.49498 6.65223 6.67566 6.77860 7.04128 7.71314 7.87437 7.93277 8.26354 8.36358 9.13878 9.86205 10.05459 11.35339 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013726 B = 0.003178 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.429159 B = 8808.248866 C = 9587.949148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.142 4.142 3 C 0.512 3.488 4 O -0.535 6.535 5 N -0.614 5.614 6 C 0.105 3.895 7 C -0.136 4.136 8 C -0.100 4.100 9 C -0.119 4.119 10 H 0.095 0.905 11 C 0.534 3.466 12 O -0.542 6.542 13 N -0.608 5.608 14 C 0.098 3.902 15 C -0.157 4.157 16 C 0.178 3.822 17 H 0.078 0.922 18 N -0.739 5.739 19 C -0.246 4.246 20 H 0.093 0.907 21 C 0.009 3.991 22 N -0.931 5.931 23 Si 0.878 3.122 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.276 1.276 27 C 0.124 3.876 28 H 0.077 0.923 29 C -0.151 4.151 30 C 0.121 3.879 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.092 0.908 46 H 0.364 0.636 47 H 0.260 0.740 48 H 0.073 0.927 49 H 0.055 0.945 50 H 0.053 0.947 51 H 0.073 0.927 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.403 -24.602 13.794 28.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.182 4.182 3 C 0.301 3.699 4 O -0.411 6.411 5 N -0.348 5.348 6 C -0.018 4.018 7 C -0.174 4.174 8 C -0.138 4.138 9 C -0.141 4.141 10 H 0.113 0.887 11 C 0.321 3.679 12 O -0.420 6.420 13 N -0.341 5.341 14 C -0.024 4.024 15 C -0.198 4.198 16 C 0.067 3.933 17 H 0.095 0.905 18 N -0.382 5.382 19 C -0.376 4.376 20 H 0.110 0.890 21 C -0.187 4.187 22 N -0.578 5.578 23 Si 0.708 3.292 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.203 1.203 27 C 0.021 3.979 28 H 0.095 0.905 29 C -0.209 4.209 30 C -0.002 4.002 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.111 0.889 46 H 0.199 0.801 47 H 0.070 0.930 48 H 0.092 0.908 49 H 0.074 0.926 50 H 0.072 0.928 51 H 0.091 0.909 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.489 -23.862 13.972 27.691 hybrid contribution 0.669 -0.883 -1.102 1.562 sum 2.157 -24.744 12.870 27.974 Atomic orbital electron populations 1.21550 0.92863 1.01614 1.03578 1.21659 0.98737 0.93716 1.04108 1.20858 0.81436 0.92091 0.75564 1.90730 1.54623 1.46547 1.49208 1.48139 1.05767 1.06974 1.73905 1.21823 0.91111 0.89558 0.99292 1.21955 0.98899 0.97809 0.98725 1.21345 0.96449 0.92043 1.03981 1.21663 0.98081 0.93153 1.01182 0.88652 1.19932 0.85650 0.84878 0.77406 1.90670 1.18822 1.86032 1.46489 1.48736 1.13067 1.08044 1.64256 1.22441 0.80787 0.99348 0.99811 1.23476 1.01269 0.93779 1.01257 1.21175 0.90238 0.95692 0.86232 0.90454 1.42862 1.64373 1.29684 1.01309 1.19059 1.26317 1.00949 0.91230 0.88963 1.24640 1.00162 0.97507 0.96409 1.69689 1.48013 1.29551 1.10538 0.86664 0.80132 0.81521 0.80838 1.21093 1.21617 1.20259 1.22004 0.95520 0.81176 0.99243 0.90534 1.21967 0.97457 1.02923 0.98576 1.21513 0.97712 0.83705 0.97223 0.92065 0.91922 0.91809 0.88892 0.88977 0.90936 0.89410 0.90039 0.91263 0.90929 0.90497 0.91013 0.91417 0.91555 0.88946 0.80060 0.92976 0.90782 0.92575 0.92781 0.90877 0.88020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.20 37.16 0.34 -0.65 16 2 C -0.14 -0.90 4.77 -27.89 -0.13 -1.03 16 3 C 0.51 5.26 7.70 -10.99 -0.08 5.18 16 4 O -0.53 -7.72 15.40 5.55 0.09 -7.64 16 5 N -0.61 -5.55 2.97 -172.79 -0.51 -6.07 16 6 C 0.10 0.61 6.34 -3.71 -0.02 0.58 16 7 C -0.14 -0.86 6.08 -26.61 -0.16 -1.02 16 8 C -0.10 -0.95 4.58 -26.69 -0.12 -1.07 16 9 C -0.12 -1.35 2.01 -91.67 -0.18 -1.53 16 10 H 0.10 1.10 7.86 -51.93 -0.41 0.69 16 11 C 0.53 7.94 6.79 -10.99 -0.07 7.87 16 12 O -0.54 -9.50 15.44 5.56 0.09 -9.41 16 13 N -0.61 -9.36 3.06 -163.02 -0.50 -9.86 16 14 C 0.10 1.46 6.43 -2.53 -0.02 1.44 16 15 C -0.16 -2.52 6.77 -24.58 -0.17 -2.69 16 16 C 0.18 3.25 3.46 -66.09 -0.23 3.02 16 17 H 0.08 1.43 8.11 -51.93 -0.42 1.00 16 18 N -0.74 -16.55 4.41 -51.65 -0.23 -16.78 16 19 C -0.25 -6.62 10.46 -15.06 -0.16 -6.78 16 20 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 21 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 22 N -0.93 -28.65 13.97 55.49 0.78 -27.87 16 23 Si 0.88 21.76 27.74 -169.99 -4.71 17.05 16 24 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 27 C 0.12 2.07 3.40 -66.95 -0.23 1.85 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 29 C -0.15 -2.67 8.12 37.15 0.30 -2.37 16 30 C 0.12 1.32 5.58 -3.73 -0.02 1.30 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.52 8.10 -51.93 -0.42 0.09 16 33 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 34 H 0.09 0.43 7.69 -51.93 -0.40 0.03 16 35 H 0.09 0.40 7.94 -51.93 -0.41 -0.02 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.30 5.93 -51.93 -0.31 0.00 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 0.77 7.96 -51.93 -0.41 0.36 16 42 H 0.07 0.96 5.53 -51.93 -0.29 0.67 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 46 H 0.36 8.24 3.59 -40.82 -0.15 8.09 16 47 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 48 H 0.07 1.34 8.11 -51.93 -0.42 0.92 16 49 H 0.06 0.97 7.32 -51.93 -0.38 0.59 16 50 H 0.05 1.02 6.66 -51.93 -0.35 0.67 16 51 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 52 H 0.10 1.28 4.73 -51.93 -0.25 1.03 16 LS Contribution 396.34 15.07 5.97 5.97 Total: -1.00 -33.51 396.34 -8.94 -42.45 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -8.85 Total: 7.91 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -1.05 Total: 4.26 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: -0.47 Total: -60.58 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: 0.17 Total: -17.05 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.05 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.51 -8.94 -42.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074665608.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.811 kcal (2) G-P(sol) polarization free energy of solvation -33.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds