Wall clock time and date at job start Tue Mar 31 2020 21:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47420 * 2 1 4 4 C 1.53009 * 109.46685 * 240.00045 * 2 1 3 5 5 C 1.53005 * 109.46965 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46985 * 59.99685 * 5 4 2 7 7 C 1.52997 * 109.47482 * 300.00280 * 6 5 4 8 8 H 1.08999 * 109.46925 * 299.99912 * 7 6 5 9 9 N 1.46500 * 109.47313 * 180.02562 * 7 6 5 10 10 C 1.34781 * 119.99800 * 85.26792 * 9 7 6 11 11 O 1.21271 * 120.00116 * 359.73270 * 10 9 7 12 12 C 1.50707 * 119.99635 * 179.72329 * 10 9 7 13 13 N 1.46893 * 109.46866 * 180.02562 * 12 10 9 14 14 C 1.46908 * 111.00105 * 294.30510 * 13 12 10 15 15 C 1.53236 * 109.33898 * 172.74760 * 14 13 12 16 16 N 1.47079 * 108.52387 * 53.82985 * 15 14 13 17 17 C 1.34774 * 120.88405 * 128.78727 * 16 15 14 18 18 O 1.21688 * 120.00331 * 174.71346 * 17 16 15 19 19 C 1.46377 * 120.00026 * 354.71757 * 17 16 15 20 20 H 1.08004 * 119.99884 * 351.24940 * 19 17 16 21 21 C 1.40045 * 120.00284 * 171.24900 * 19 17 16 22 22 N 1.30671 * 120.00073 * 358.53298 * 21 19 17 23 23 Si 1.86799 * 120.00124 * 178.53230 * 21 19 17 24 24 H 1.48503 * 109.47289 * 85.03102 * 23 21 19 25 25 H 1.48499 * 109.47423 * 205.02871 * 23 21 19 26 26 H 1.48500 * 109.47224 * 325.03176 * 23 21 19 27 27 C 1.47079 * 118.23673 * 308.81813 * 16 15 14 28 28 C 1.46897 * 111.00114 * 170.00267 * 13 12 10 29 29 C 1.52997 * 109.47465 * 59.99944 * 7 6 5 30 30 H 1.09005 * 109.46711 * 300.00508 * 1 2 3 31 31 H 1.08998 * 109.47092 * 59.99573 * 1 2 3 32 32 H 1.08999 * 109.47420 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47155 * 300.00118 * 4 2 1 34 34 H 1.08998 * 109.47044 * 60.00352 * 4 2 1 35 35 H 1.08996 * 109.46885 * 179.97438 * 5 4 2 36 36 H 1.08999 * 109.47132 * 299.99950 * 5 4 2 37 37 H 1.08997 * 109.46695 * 179.97438 * 6 5 4 38 38 H 1.08999 * 109.46969 * 60.00166 * 6 5 4 39 39 H 0.96995 * 120.00191 * 265.00260 * 9 7 6 40 40 H 1.08997 * 109.46819 * 300.00649 * 12 10 9 41 41 H 1.09004 * 109.46620 * 60.00552 * 12 10 9 42 42 H 1.09000 * 109.48770 * 292.70837 * 14 13 12 43 43 H 1.08995 * 109.49112 * 52.78707 * 14 13 12 44 44 H 1.08994 * 109.63295 * 294.11663 * 15 14 13 45 45 H 1.09003 * 109.62750 * 173.53873 * 15 14 13 46 46 H 0.97001 * 120.00323 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.62116 * 291.46908 * 27 16 15 48 48 H 1.08999 * 109.62680 * 170.89627 * 27 16 15 49 49 H 1.08997 * 109.49342 * 307.21401 * 28 13 12 50 50 H 1.09006 * 109.48998 * 67.26601 * 28 13 12 51 51 H 1.08999 * 109.47074 * 60.00060 * 29 7 6 52 52 H 1.08996 * 109.47111 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2494 5 6 3.5700 -0.7219 -1.2491 6 6 4.0794 -1.4435 0.0002 7 6 3.5695 -0.7223 1.2494 8 1 3.9332 0.3052 1.2496 9 7 4.0579 -1.4129 2.4456 10 6 5.2777 -1.1231 2.9402 11 8 5.9730 -0.2942 2.3922 12 6 5.7775 -1.8291 4.1743 13 7 7.1218 -1.3396 4.5077 14 6 8.0903 -1.7110 3.4674 15 6 9.4329 -1.0322 3.7585 16 7 9.8373 -1.3665 5.1325 17 6 11.0648 -1.8588 5.3920 18 8 11.4173 -2.0394 6.5426 19 6 11.9742 -2.1760 4.2897 20 1 11.6170 -2.1512 3.2708 21 6 13.3075 -2.5117 4.5563 22 7 13.7472 -2.5138 5.7868 23 14 14.4572 -2.9564 3.1529 24 1 15.0348 -1.7167 2.5742 25 1 15.5515 -3.8203 3.6642 26 1 13.6996 -3.6857 2.1044 27 6 8.8663 -1.1501 6.2158 28 6 7.5460 -1.8241 5.8280 29 6 2.0395 -0.7217 1.2492 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6765 -1.7489 -1.2494 34 1 1.6766 -0.2074 -2.1393 35 1 3.9332 -1.2361 -2.1388 36 1 3.9337 0.3056 -1.2489 37 1 5.1694 -1.4443 0.0001 38 1 3.7157 -2.4710 0.0000 39 1 3.5018 -2.0758 2.8838 40 1 5.1018 -1.6293 5.0059 41 1 5.8170 -2.9023 3.9880 42 1 8.2229 -2.7929 3.4635 43 1 7.7217 -1.3858 2.4946 44 1 9.3259 0.0480 3.6609 45 1 10.1854 -1.3933 3.0573 46 1 14.6705 -2.7466 5.9715 47 1 8.7049 -0.0810 6.3544 48 1 9.2442 -1.5889 7.1393 49 1 6.7827 -1.5810 6.5671 50 1 7.6857 -2.9045 5.7913 51 1 1.6758 -1.7492 1.2490 52 1 1.6763 -0.2075 2.1390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185715982.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:08 Heat of formation + Delta-G solvation = -78.748287 kcal Electronic energy + Delta-G solvation = -29863.463682 eV Core-core repulsion = 25862.116782 eV Total energy + Delta-G solvation = -4001.346900 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.34404 -39.02753 -38.11790 -36.28022 -34.61714 -33.33015 -32.56307 -32.43114 -30.58878 -30.24884 -28.17346 -26.78046 -26.31522 -24.47288 -22.97643 -22.66559 -21.79318 -20.70214 -20.60318 -19.90268 -18.73576 -17.09855 -16.73855 -16.35384 -15.73812 -15.53095 -15.34189 -14.80542 -14.75061 -14.63131 -14.38184 -14.21804 -14.11785 -13.90036 -13.81276 -13.46020 -13.14715 -12.89800 -12.78063 -12.44365 -12.23190 -12.10512 -11.83618 -11.62649 -11.57668 -11.41992 -11.31276 -11.11853 -11.00473 -10.93074 -10.87460 -10.76219 -10.63845 -10.57690 -10.45693 -10.18025 -9.93372 -9.59233 -9.17017 -8.82575 -8.13215 -7.54065 -7.12552 -6.17161 -4.60170 2.64319 2.91180 3.16571 3.22860 3.25828 4.06739 4.16086 4.24609 4.32660 4.44356 4.59086 4.68206 4.68925 4.74542 4.79622 5.03991 5.06833 5.09121 5.15448 5.20166 5.22867 5.24928 5.31290 5.41691 5.46263 5.53792 5.57879 5.66702 5.74181 5.74379 5.78758 5.83957 5.84139 5.87308 5.90621 5.97664 6.01241 6.09268 6.19789 6.33148 6.40429 6.54288 6.62216 6.82159 7.10773 7.32127 7.43982 7.49518 7.68037 8.18490 8.23408 8.42185 9.05844 9.49361 10.61255 10.79659 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019981 B = 0.002181 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.983417 B =12832.369339 C =13977.910324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 H 0.073 0.927 4 C -0.116 4.116 5 C -0.118 4.118 6 C -0.129 4.129 7 C 0.147 3.853 8 H 0.087 0.913 9 N -0.735 5.735 10 C 0.515 3.485 11 O -0.513 6.513 12 C 0.036 3.964 13 N -0.519 5.519 14 C 0.039 3.961 15 C 0.131 3.869 16 N -0.645 5.645 17 C 0.562 3.438 18 O -0.581 6.581 19 C -0.545 4.545 20 H 0.072 0.928 21 C 0.088 3.912 22 N -0.770 5.770 23 Si 0.906 3.094 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.265 1.265 27 C 0.127 3.873 28 C 0.046 3.954 29 C -0.120 4.120 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.397 0.603 40 H 0.100 0.900 41 H 0.059 0.941 42 H 0.029 0.971 43 H 0.090 0.910 44 H 0.051 0.949 45 H 0.094 0.906 46 H 0.268 0.732 47 H 0.050 0.950 48 H 0.086 0.914 49 H 0.074 0.926 50 H 0.035 0.965 51 H 0.067 0.933 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.232 1.222 -11.930 29.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 H 0.091 0.909 4 C -0.153 4.153 5 C -0.156 4.156 6 C -0.168 4.168 7 C 0.043 3.957 8 H 0.105 0.895 9 N -0.388 5.388 10 C 0.300 3.700 11 O -0.386 6.386 12 C -0.096 4.096 13 N -0.244 5.244 14 C -0.090 4.090 15 C 0.006 3.994 16 N -0.383 5.383 17 C 0.367 3.633 18 O -0.463 6.463 19 C -0.581 4.581 20 H 0.090 0.910 21 C -0.131 4.131 22 N -0.399 5.399 23 Si 0.731 3.269 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.190 1.190 27 C 0.002 3.998 28 C -0.083 4.083 29 C -0.158 4.158 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.230 0.770 40 H 0.118 0.882 41 H 0.077 0.923 42 H 0.047 0.953 43 H 0.108 0.892 44 H 0.070 0.930 45 H 0.112 0.888 46 H 0.079 0.921 47 H 0.068 0.932 48 H 0.104 0.896 49 H 0.092 0.908 50 H 0.053 0.947 51 H 0.085 0.915 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -26.327 2.212 -11.513 28.819 hybrid contribution 0.133 -1.470 -0.565 1.580 sum -26.193 0.742 -12.078 28.853 Atomic orbital electron populations 1.21823 0.94967 1.01835 1.01801 1.21084 0.95547 0.99856 0.94338 0.90863 1.21637 0.95632 1.00641 0.97393 1.21496 0.95327 1.01166 0.97597 1.21922 1.01527 0.99313 0.94046 1.20916 0.93257 0.97470 0.84081 0.89454 1.46105 1.18432 1.44213 1.30069 1.20673 0.81011 0.82820 0.85458 1.90695 1.55256 1.32590 1.60107 1.21955 0.93785 0.97480 0.96379 1.61680 1.00007 1.59703 1.03030 1.22722 0.93298 0.97598 0.95339 1.21452 0.93655 0.98405 0.85842 1.48264 1.14936 1.69876 1.05260 1.18238 0.78794 0.76334 0.89891 1.90577 1.74590 1.58127 1.23054 1.20948 0.94643 1.49571 0.92972 0.90970 1.25718 0.98491 0.93086 0.95847 1.69999 1.15455 1.35027 1.19440 0.86416 0.79849 0.78976 0.81699 1.19607 1.20512 1.18955 1.21179 0.86886 0.98754 0.92971 1.22568 0.98347 0.97678 0.89692 1.21861 0.94097 1.01349 0.98505 0.92627 0.92565 0.92683 0.91948 0.91882 0.91693 0.91650 0.91260 0.91987 0.76971 0.88215 0.92323 0.95275 0.89159 0.93024 0.88808 0.92105 0.93190 0.89593 0.90805 0.94692 0.91462 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.19 37.16 0.34 -0.36 16 2 C -0.09 -0.51 2.72 -90.61 -0.25 -0.75 16 3 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.12 -0.66 5.20 -26.72 -0.14 -0.80 16 5 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 6 C -0.13 -1.09 5.50 -26.73 -0.15 -1.23 16 7 C 0.15 1.23 2.46 -67.93 -0.17 1.06 16 8 H 0.09 0.94 7.57 -51.93 -0.39 0.54 16 9 N -0.74 -6.27 5.08 -53.81 -0.27 -6.54 16 10 C 0.51 6.31 7.46 -10.98 -0.08 6.22 16 11 O -0.51 -8.42 13.99 5.57 0.08 -8.34 16 12 C 0.04 0.41 5.45 -4.98 -0.03 0.39 16 13 N -0.52 -8.27 4.37 -235.77 -1.03 -9.30 16 14 C 0.04 0.68 5.26 -3.70 -0.02 0.66 16 15 C 0.13 2.72 6.52 -3.60 -0.02 2.69 16 16 N -0.64 -15.51 3.01 -174.13 -0.52 -16.03 16 17 C 0.56 16.46 7.61 -12.99 -0.10 16.37 16 18 O -0.58 -19.15 14.57 5.20 0.08 -19.08 16 19 C -0.54 -15.62 8.84 -35.63 -0.31 -15.94 16 20 H 0.07 1.90 5.75 -52.48 -0.30 1.60 16 21 C 0.09 2.49 5.50 -17.37 -0.10 2.40 16 22 N -0.77 -23.40 11.87 55.55 0.66 -22.74 16 23 Si 0.91 20.44 29.56 -169.99 -5.02 15.42 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 27 C 0.13 2.61 6.58 -3.61 -0.02 2.58 16 28 C 0.05 0.74 5.62 -3.70 -0.02 0.72 16 29 C -0.12 -0.71 4.67 -26.73 -0.12 -0.84 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.40 2.25 8.60 -40.82 -0.35 1.90 16 40 H 0.10 0.92 7.97 -51.93 -0.41 0.51 16 41 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.09 1.57 5.76 -51.93 -0.30 1.27 16 44 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.09 1.99 5.39 -51.93 -0.28 1.72 16 46 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16 47 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 48 H 0.09 1.91 7.10 -51.93 -0.37 1.54 16 49 H 0.07 0.98 7.99 -51.93 -0.41 0.56 16 50 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 52 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 401.07 15.07 6.04 6.04 Total: -1.00 -36.52 401.07 -10.48 -47.01 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -9.14 Total: 1.39 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: -1.35 Total: 12.19 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -1.17 Total: -54.62 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: 0.15 Total: -27.42 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.52 -10.48 -47.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185715982.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.741 kcal (2) G-P(sol) polarization free energy of solvation -36.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds