Wall clock time and date at job start Tue Mar 31 2020 21:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47420 * 2 1 4 4 C 1.53009 * 109.46685 * 240.00045 * 2 1 3 5 5 C 1.53005 * 109.46965 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46985 * 59.99685 * 5 4 2 7 7 C 1.52997 * 109.47482 * 300.00280 * 6 5 4 8 8 H 1.08999 * 109.46925 * 299.99912 * 7 6 5 9 9 N 1.46500 * 109.47313 * 180.02562 * 7 6 5 10 10 C 1.34781 * 119.99800 * 85.26792 * 9 7 6 11 11 O 1.21271 * 120.00116 * 359.73270 * 10 9 7 12 12 C 1.50707 * 119.99635 * 179.72329 * 10 9 7 13 13 N 1.46893 * 109.46866 * 180.02562 * 12 10 9 14 14 C 1.46908 * 111.00105 * 294.30510 * 13 12 10 15 15 C 1.53236 * 109.33898 * 172.74760 * 14 13 12 16 16 N 1.47079 * 108.52387 * 53.82985 * 15 14 13 17 17 C 1.34774 * 120.88405 * 128.78727 * 16 15 14 18 18 O 1.21688 * 120.00331 * 174.71346 * 17 16 15 19 19 C 1.46377 * 120.00026 * 354.71757 * 17 16 15 20 20 H 1.08004 * 119.99884 * 351.24940 * 19 17 16 21 21 C 1.40045 * 120.00284 * 171.24900 * 19 17 16 22 22 N 1.30671 * 120.00073 * 358.53298 * 21 19 17 23 23 Si 1.86799 * 120.00124 * 178.53230 * 21 19 17 24 24 H 1.48503 * 109.47289 * 85.03102 * 23 21 19 25 25 H 1.48499 * 109.47423 * 205.02871 * 23 21 19 26 26 H 1.48500 * 109.47224 * 325.03176 * 23 21 19 27 27 C 1.47079 * 118.23673 * 308.81813 * 16 15 14 28 28 C 1.46897 * 111.00114 * 170.00267 * 13 12 10 29 29 C 1.52997 * 109.47465 * 59.99944 * 7 6 5 30 30 H 1.09005 * 109.46711 * 300.00508 * 1 2 3 31 31 H 1.08998 * 109.47092 * 59.99573 * 1 2 3 32 32 H 1.08999 * 109.47420 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47155 * 300.00118 * 4 2 1 34 34 H 1.08998 * 109.47044 * 60.00352 * 4 2 1 35 35 H 1.08996 * 109.46885 * 179.97438 * 5 4 2 36 36 H 1.08999 * 109.47132 * 299.99950 * 5 4 2 37 37 H 1.08997 * 109.46695 * 179.97438 * 6 5 4 38 38 H 1.08999 * 109.46969 * 60.00166 * 6 5 4 39 39 H 0.96995 * 120.00191 * 265.00260 * 9 7 6 40 40 H 1.08997 * 109.46819 * 300.00649 * 12 10 9 41 41 H 1.09004 * 109.46620 * 60.00552 * 12 10 9 42 42 H 1.09000 * 109.48770 * 292.70837 * 14 13 12 43 43 H 1.08995 * 109.49112 * 52.78707 * 14 13 12 44 44 H 1.08994 * 109.63295 * 294.11663 * 15 14 13 45 45 H 1.09003 * 109.62750 * 173.53873 * 15 14 13 46 46 H 0.97001 * 120.00323 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.62116 * 291.46908 * 27 16 15 48 48 H 1.08999 * 109.62680 * 170.89627 * 27 16 15 49 49 H 1.08997 * 109.49342 * 307.21401 * 28 13 12 50 50 H 1.09006 * 109.48998 * 67.26601 * 28 13 12 51 51 H 1.08999 * 109.47074 * 60.00060 * 29 7 6 52 52 H 1.08996 * 109.47111 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2494 5 6 3.5700 -0.7219 -1.2491 6 6 4.0794 -1.4435 0.0002 7 6 3.5695 -0.7223 1.2494 8 1 3.9332 0.3052 1.2496 9 7 4.0579 -1.4129 2.4456 10 6 5.2777 -1.1231 2.9402 11 8 5.9730 -0.2942 2.3922 12 6 5.7775 -1.8291 4.1743 13 7 7.1218 -1.3396 4.5077 14 6 8.0903 -1.7110 3.4674 15 6 9.4329 -1.0322 3.7585 16 7 9.8373 -1.3665 5.1325 17 6 11.0648 -1.8588 5.3920 18 8 11.4173 -2.0394 6.5426 19 6 11.9742 -2.1760 4.2897 20 1 11.6170 -2.1512 3.2708 21 6 13.3075 -2.5117 4.5563 22 7 13.7472 -2.5138 5.7868 23 14 14.4572 -2.9564 3.1529 24 1 15.0348 -1.7167 2.5742 25 1 15.5515 -3.8203 3.6642 26 1 13.6996 -3.6857 2.1044 27 6 8.8663 -1.1501 6.2158 28 6 7.5460 -1.8241 5.8280 29 6 2.0395 -0.7217 1.2492 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6765 -1.7489 -1.2494 34 1 1.6766 -0.2074 -2.1393 35 1 3.9332 -1.2361 -2.1388 36 1 3.9337 0.3056 -1.2489 37 1 5.1694 -1.4443 0.0001 38 1 3.7157 -2.4710 0.0000 39 1 3.5018 -2.0758 2.8838 40 1 5.1018 -1.6293 5.0059 41 1 5.8170 -2.9023 3.9880 42 1 8.2229 -2.7929 3.4635 43 1 7.7217 -1.3858 2.4946 44 1 9.3259 0.0480 3.6609 45 1 10.1854 -1.3933 3.0573 46 1 14.6705 -2.7466 5.9715 47 1 8.7049 -0.0810 6.3544 48 1 9.2442 -1.5889 7.1393 49 1 6.7827 -1.5810 6.5671 50 1 7.6857 -2.9045 5.7913 51 1 1.6758 -1.7492 1.2490 52 1 1.6763 -0.2075 2.1390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185715982.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:05 Heat of formation + Delta-G solvation = -105.284799 kcal Electronic energy + Delta-G solvation = -29864.614391 eV Core-core repulsion = 25862.116782 eV Total energy + Delta-G solvation = -4002.497610 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.27032 -40.29663 -39.29384 -38.01733 -35.42406 -35.08119 -34.61069 -33.12080 -32.13935 -31.10123 -29.49974 -28.25076 -27.24310 -25.91303 -24.55488 -23.31795 -22.67141 -22.23115 -21.37593 -20.56125 -20.50445 -18.55366 -18.02377 -17.86951 -17.20610 -16.55471 -16.35471 -16.10168 -15.94783 -15.82688 -15.63938 -15.43380 -15.29688 -15.13661 -14.92787 -14.40188 -14.28275 -14.26834 -13.68573 -13.52516 -13.27435 -13.24012 -13.12033 -12.80094 -12.73461 -12.71898 -12.67433 -12.42472 -12.21288 -12.17859 -12.04081 -11.98993 -11.85005 -11.84423 -11.46194 -11.31332 -11.12712 -10.94423 -10.65661 -9.97636 -9.81231 -9.44362 -9.03359 -8.31469 -6.85164 1.38078 1.40218 1.54372 1.71126 2.07279 2.22809 2.43991 2.74490 3.04595 3.56892 3.69472 3.78366 3.82709 3.97971 4.03456 4.11837 4.15285 4.21672 4.23485 4.31378 4.38833 4.48265 4.49226 4.50165 4.54795 4.56276 4.66086 4.67009 4.79107 4.81511 4.86783 4.89857 4.94654 5.00699 5.05616 5.13500 5.15741 5.16551 5.27454 5.34605 5.36603 5.40851 5.42886 5.57119 5.63980 5.71172 5.93578 5.99617 6.11817 6.40478 6.66787 6.86280 7.37846 7.39127 8.43893 8.65154 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019981 B = 0.002181 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.983417 B =12832.369339 C =13977.910324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 H 0.062 0.938 4 C -0.111 4.111 5 C -0.117 4.117 6 C -0.125 4.125 7 C 0.148 3.852 8 H 0.059 0.941 9 N -0.716 5.716 10 C 0.513 3.487 11 O -0.562 6.562 12 C 0.037 3.963 13 N -0.532 5.532 14 C 0.055 3.945 15 C 0.130 3.870 16 N -0.648 5.648 17 C 0.543 3.457 18 O -0.632 6.632 19 C -0.571 4.571 20 H 0.090 0.910 21 C 0.029 3.971 22 N -0.823 5.823 23 Si 0.995 3.005 24 H -0.259 1.259 25 H -0.272 1.272 26 H -0.250 1.250 27 C 0.120 3.880 28 C 0.061 3.939 29 C -0.111 4.111 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.052 0.948 37 H 0.038 0.962 38 H 0.074 0.926 39 H 0.415 0.585 40 H 0.134 0.866 41 H 0.080 0.920 42 H 0.024 0.976 43 H 0.095 0.905 44 H 0.049 0.951 45 H 0.084 0.916 46 H 0.275 0.725 47 H 0.054 0.946 48 H 0.061 0.939 49 H 0.115 0.885 50 H 0.029 0.971 51 H 0.084 0.916 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.910 0.173 -13.627 32.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.081 0.919 4 C -0.148 4.148 5 C -0.155 4.155 6 C -0.164 4.164 7 C 0.043 3.957 8 H 0.077 0.923 9 N -0.369 5.369 10 C 0.300 3.700 11 O -0.440 6.440 12 C -0.094 4.094 13 N -0.257 5.257 14 C -0.073 4.073 15 C 0.006 3.994 16 N -0.385 5.385 17 C 0.349 3.651 18 O -0.519 6.519 19 C -0.607 4.607 20 H 0.107 0.893 21 C -0.186 4.186 22 N -0.452 5.452 23 Si 0.814 3.186 24 H -0.184 1.184 25 H -0.196 1.196 26 H -0.174 1.174 27 C -0.004 4.004 28 C -0.068 4.068 29 C -0.149 4.149 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.093 0.907 39 H 0.252 0.748 40 H 0.152 0.848 41 H 0.098 0.902 42 H 0.043 0.957 43 H 0.113 0.887 44 H 0.068 0.932 45 H 0.102 0.898 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.080 0.920 49 H 0.133 0.867 50 H 0.047 0.953 51 H 0.102 0.898 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -29.118 1.159 -13.231 32.004 hybrid contribution 0.863 -1.072 -0.024 1.376 sum -28.255 0.087 -13.255 31.210 Atomic orbital electron populations 1.21789 0.93857 1.02377 1.02057 1.21084 0.96382 0.99237 0.94172 0.91940 1.21607 0.94166 1.01282 0.97756 1.21488 0.96641 1.00289 0.97117 1.21864 0.99605 1.00190 0.94722 1.20920 0.94980 0.95891 0.83868 0.92273 1.45942 1.17413 1.43859 1.29714 1.20836 0.81560 0.82199 0.85432 1.90686 1.56840 1.34913 1.61573 1.22083 0.91591 0.98342 0.97357 1.61563 1.01523 1.60437 1.02175 1.22447 0.91990 0.96672 0.96239 1.21528 0.95399 0.98564 0.83884 1.48155 1.14260 1.68638 1.07399 1.18636 0.80453 0.76486 0.89483 1.90522 1.76246 1.60451 1.24722 1.21447 0.95530 1.50007 0.93714 0.89253 1.26979 1.00318 0.92128 0.99133 1.70165 1.16407 1.36088 1.22586 0.85071 0.76944 0.79145 0.77403 1.18357 1.19643 1.17371 1.21353 0.88385 0.99406 0.91227 1.22400 0.96772 0.96599 0.90988 1.21807 0.91747 1.02480 0.98855 0.92457 0.92320 0.91953 0.91036 0.91257 0.91371 0.92873 0.94300 0.90734 0.74820 0.84791 0.90241 0.95741 0.88678 0.93232 0.89817 0.91525 0.92743 0.92020 0.86707 0.95284 0.89765 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.19 71.98 0.66 -0.34 16 2 C -0.09 -0.84 2.72 -10.79 -0.03 -0.87 16 3 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 4 C -0.11 -1.05 5.20 30.60 0.16 -0.89 16 5 C -0.12 -1.58 5.92 30.60 0.18 -1.40 16 6 C -0.13 -1.99 5.50 30.59 0.17 -1.82 16 7 C 0.15 2.27 2.46 44.99 0.11 2.38 16 8 H 0.06 1.28 7.57 -2.39 -0.02 1.26 16 9 N -0.72 -10.54 5.08 -442.54 -2.25 -12.78 16 10 C 0.51 11.64 7.46 87.66 0.65 12.29 16 11 O -0.56 -18.31 13.99 -3.00 -0.04 -18.36 16 12 C 0.04 0.74 5.45 85.56 0.47 1.21 16 13 N -0.53 -15.98 4.37 -899.83 -3.93 -19.91 16 14 C 0.06 1.92 5.26 86.38 0.45 2.37 16 15 C 0.13 5.48 6.52 86.35 0.56 6.04 16 16 N -0.65 -32.07 3.01 -823.05 -2.48 -34.55 16 17 C 0.54 33.17 7.61 86.36 0.66 33.83 16 18 O -0.63 -43.85 14.57 -4.31 -0.06 -43.92 16 19 C -0.57 -33.56 8.84 24.83 0.22 -33.34 16 20 H 0.09 4.77 5.75 -2.91 -0.02 4.75 16 21 C 0.03 1.68 5.50 85.30 0.47 2.15 16 22 N -0.82 -51.59 11.87 21.83 0.26 -51.33 16 23 Si 1.00 42.15 29.56 68.60 2.03 44.17 16 24 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 27 C 0.12 5.02 6.58 86.35 0.57 5.59 16 28 C 0.06 1.87 5.62 86.38 0.49 2.36 16 29 C -0.11 -1.03 4.67 30.59 0.14 -0.89 16 30 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 31 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 36 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.04 0.85 8.14 -2.39 -0.02 0.84 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.41 3.18 8.60 -92.71 -0.80 2.38 16 40 H 0.13 1.83 7.97 -2.39 -0.02 1.81 16 41 H 0.08 1.35 8.13 -2.38 -0.02 1.33 16 42 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.10 3.27 5.76 -2.39 -0.01 3.26 16 44 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.08 3.64 5.39 -2.39 -0.01 3.63 16 46 H 0.27 15.58 8.29 -92.71 -0.77 14.81 16 47 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 48 H 0.06 2.86 7.10 -2.39 -0.02 2.84 16 49 H 0.11 2.63 7.99 -2.39 -0.02 2.61 16 50 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 51 H 0.08 0.54 8.14 -2.39 -0.02 0.53 16 52 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -84.56 401.07 -0.44 -85.00 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.11 Total: 23.00 kcal Atomic # 6 Polarization: 22.74 SS G_CDS: 5.93 Total: 28.67 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -8.40 Total: -118.58 kcal Atomic # 8 Polarization: -62.17 SS G_CDS: -0.10 Total: -62.27 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -84.56 -0.44 -85.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185715982.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.288 kcal (2) G-P(sol) polarization free energy of solvation -84.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds