Wall clock time and date at job start Tue Mar 31 2020 22:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47279 * 2 1 4 4 C 1.50698 * 109.47061 * 239.99036 * 2 1 3 5 5 H 1.07994 * 120.00423 * 240.00137 * 4 2 1 6 6 C 1.37880 * 119.99734 * 60.00437 * 4 2 1 7 7 N 1.31513 * 120.00314 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00124 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47167 * 89.99971 * 8 6 4 10 10 H 1.48493 * 109.47406 * 210.00345 * 8 6 4 11 11 H 1.48500 * 109.46848 * 330.00312 * 8 6 4 12 12 N 1.46901 * 109.46632 * 119.99767 * 2 1 3 13 13 C 1.46903 * 110.99889 * 288.21131 * 12 2 1 14 14 C 1.46902 * 111.00563 * 52.16595 * 12 2 1 15 15 N 1.46490 * 109.47412 * 156.09905 * 14 12 2 16 16 C 1.33866 * 124.19493 * 90.02627 * 15 14 12 17 17 O 1.21543 * 123.78652 * 359.97438 * 16 15 14 18 18 N 1.34673 * 112.42666 * 180.02562 * 16 15 14 19 19 C 1.46854 * 106.41393 * 359.97438 * 18 16 15 20 20 C 1.52474 * 110.49181 * 241.43809 * 19 18 16 21 21 C 1.53096 * 109.52493 * 296.00423 * 20 19 18 22 22 H 1.08996 * 109.47909 * 180.85393 * 21 20 19 23 23 C 1.52997 * 109.48932 * 60.82338 * 21 20 19 24 24 C 1.52998 * 109.41592 * 300.83530 * 21 20 19 25 25 C 1.53011 * 109.56531 * 60.40145 * 24 21 20 26 26 H 1.09001 * 109.47747 * 59.57478 * 25 24 21 27 27 C 1.52995 * 109.48950 * 179.60136 * 25 24 21 28 28 C 1.52479 * 110.48687 * 118.55579 * 19 18 16 29 29 C 1.34919 * 124.19916 * 269.73147 * 15 14 12 30 30 O 1.21240 * 127.25368 * 359.95984 * 29 15 14 31 31 H 1.08999 * 109.46760 * 63.75706 * 1 2 3 32 32 H 1.08994 * 109.47339 * 183.75204 * 1 2 3 33 33 H 1.09001 * 109.47145 * 303.76198 * 1 2 3 34 34 H 0.96997 * 120.00639 * 179.97438 * 7 6 4 35 35 H 1.08995 * 109.47111 * 183.95289 * 13 12 2 36 36 H 1.09000 * 109.47347 * 303.95892 * 13 12 2 37 37 H 1.09007 * 109.46705 * 63.95815 * 13 12 2 38 38 H 1.08994 * 109.47007 * 276.10801 * 14 12 2 39 39 H 1.09008 * 109.46714 * 36.09753 * 14 12 2 40 40 H 0.96998 * 126.79337 * 179.97438 * 18 16 15 41 41 H 1.08999 * 109.46354 * 56.01595 * 20 19 18 42 42 H 1.09002 * 109.46145 * 175.98895 * 20 19 18 43 43 H 1.09003 * 109.47411 * 272.21956 * 23 21 20 44 44 H 1.09003 * 109.47056 * 32.21437 * 23 21 20 45 45 H 1.09000 * 109.47130 * 152.21425 * 23 21 20 46 46 H 1.08991 * 109.45925 * 300.36885 * 24 21 20 47 47 H 1.09001 * 109.43804 * 180.42013 * 24 21 20 48 48 H 1.09001 * 109.47380 * 179.97438 * 27 25 24 49 49 H 1.09000 * 109.47500 * 299.95191 * 27 25 24 50 50 H 1.08997 * 109.47215 * 59.95162 * 27 25 24 51 51 H 1.08998 * 109.46878 * 184.00736 * 28 19 18 52 52 H 1.09000 * 109.46048 * 303.99432 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2397 -2.4827 7 7 0.9429 0.8294 -2.6035 8 14 2.3225 -1.1200 -4.0078 9 1 1.3448 -2.1620 -4.4122 10 1 2.4874 -0.1409 -5.1120 11 1 3.6308 -1.7571 -3.7117 12 7 2.0196 -0.6925 1.1995 13 6 1.7909 0.1162 2.4044 14 6 1.4020 -2.0189 1.3307 15 7 2.2679 -2.8832 2.1363 16 6 2.1911 -2.9940 3.4682 17 8 1.3912 -2.3858 4.1520 18 7 3.1002 -3.8542 3.9655 19 6 3.8598 -4.3650 2.8172 20 6 3.6913 -5.8754 2.6949 21 6 4.2931 -6.5587 3.9257 22 1 4.1858 -7.6392 3.8305 23 6 3.5623 -6.0821 5.1826 24 6 5.7768 -6.2007 4.0316 25 6 5.9293 -4.6849 4.1750 26 1 5.4044 -4.3499 5.0697 27 6 7.4129 -4.3298 4.2907 28 6 5.3335 -3.9950 2.9450 29 6 3.2381 -3.6708 1.6275 30 8 3.5472 -3.7940 0.4617 31 1 -0.3633 0.4544 -0.9217 32 1 -0.3634 -1.0254 0.0672 33 1 -0.3633 0.5711 0.8544 34 1 0.7088 1.1609 -3.4845 35 1 2.2250 -0.3876 3.2679 36 1 2.2585 1.0930 2.2806 37 1 0.7193 0.2433 2.5586 38 1 0.4317 -1.9213 1.8176 39 1 1.2696 -2.4575 0.3416 40 1 3.2279 -4.0898 4.8977 41 1 2.6309 -6.1182 2.6270 42 1 4.2024 -6.2265 1.7984 43 1 4.0375 -5.1756 5.5575 44 1 2.5206 -5.8723 4.9396 45 1 3.6080 -6.8588 5.9459 46 1 6.2959 -6.5344 3.1332 47 1 6.2074 -6.6930 4.9036 48 1 7.5212 -3.2500 4.3924 49 1 7.8369 -4.8211 5.1664 50 1 7.9377 -4.6653 3.3962 51 1 5.8682 -4.3192 2.0523 52 1 5.4286 -2.9146 3.0532 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245638520.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:57 Heat of formation + Delta-G solvation = -29.795494 kcal Electronic energy + Delta-G solvation = -32321.330508 eV Core-core repulsion = 28322.106360 eV Total energy + Delta-G solvation = -3999.224148 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.61581 -39.32738 -38.19794 -37.07577 -35.57224 -33.92638 -33.36838 -32.39235 -30.65266 -28.80942 -27.36803 -26.86410 -26.70097 -25.26141 -24.18682 -23.32510 -21.95418 -21.69673 -20.30259 -19.50314 -18.98381 -17.58729 -16.69655 -16.38399 -16.10300 -15.69678 -15.49279 -15.23774 -14.78634 -14.75414 -14.40796 -14.13443 -13.85281 -13.70847 -13.60667 -13.43562 -13.23862 -12.92973 -12.70115 -12.24945 -12.17978 -11.99707 -11.86227 -11.82581 -11.71222 -11.43915 -11.28906 -11.13674 -11.05266 -10.82251 -10.79561 -10.67805 -10.48125 -10.46830 -10.38160 -10.19128 -9.98379 -9.59939 -9.41552 -9.27224 -8.86946 -8.35672 -7.33760 -5.98878 -4.02943 1.96212 2.56341 3.27822 3.35556 3.36380 3.41753 3.49878 4.02461 4.23785 4.30630 4.46539 4.59156 4.63481 4.69483 4.85817 4.93551 5.06084 5.08919 5.21867 5.30638 5.32961 5.38650 5.41398 5.45685 5.53371 5.57483 5.63907 5.68945 5.77797 5.84567 5.88423 5.90307 5.98942 6.00318 6.01174 6.10357 6.15603 6.24325 6.32506 6.54877 6.69624 6.82143 6.90121 7.06271 7.26224 7.47511 7.64071 7.77946 7.88189 8.03974 8.30287 8.43291 8.53558 9.06429 9.63220 11.07801 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015118 B = 0.003776 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.710748 B = 7412.603171 C = 8277.869394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.217 3.783 3 H 0.045 0.955 4 C -0.503 4.503 5 H 0.069 0.931 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.272 1.272 12 N -0.546 5.546 13 C 0.029 3.971 14 C 0.290 3.710 15 N -0.565 5.565 16 C 0.699 3.301 17 O -0.550 6.550 18 N -0.728 5.728 19 C 0.126 3.874 20 C -0.110 4.110 21 C -0.087 4.087 22 H 0.080 0.920 23 C -0.164 4.164 24 C -0.113 4.113 25 C -0.092 4.092 26 H 0.074 0.926 27 C -0.147 4.147 28 C -0.108 4.108 29 C 0.532 3.468 30 O -0.449 6.449 31 H 0.094 0.906 32 H 0.026 0.974 33 H 0.011 0.989 34 H 0.260 0.740 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.022 0.978 38 H 0.062 0.938 39 H 0.117 0.883 40 H 0.435 0.565 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.058 0.942 46 H 0.069 0.931 47 H 0.066 0.934 48 H 0.057 0.943 49 H 0.055 0.945 50 H 0.057 0.943 51 H 0.088 0.912 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.578 -14.915 16.006 23.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.111 3.889 3 H 0.063 0.937 4 C -0.542 4.542 5 H 0.087 0.913 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.196 1.196 12 N -0.271 5.271 13 C -0.120 4.120 14 C 0.080 3.920 15 N -0.312 5.312 16 C 0.400 3.600 17 O -0.425 6.425 18 N -0.400 5.400 19 C 0.035 3.965 20 C -0.148 4.148 21 C -0.106 4.106 22 H 0.098 0.902 23 C -0.222 4.222 24 C -0.150 4.150 25 C -0.110 4.110 26 H 0.092 0.908 27 C -0.204 4.204 28 C -0.146 4.146 29 C 0.317 3.683 30 O -0.316 6.316 31 H 0.112 0.888 32 H 0.045 0.955 33 H 0.030 0.970 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.041 0.959 38 H 0.080 0.920 39 H 0.135 0.865 40 H 0.286 0.714 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.077 0.923 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.076 0.924 49 H 0.074 0.926 50 H 0.077 0.923 51 H 0.107 0.893 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.682 -14.511 15.433 22.894 hybrid contribution -0.565 -0.202 -0.350 0.694 sum 8.117 -14.713 15.083 22.580 Atomic orbital electron populations 1.22475 1.00415 0.98753 1.01757 1.19335 0.89920 0.94552 0.85095 0.93705 1.21210 1.30700 1.12805 0.89451 0.91300 1.24904 0.95110 0.95039 0.99010 1.69878 1.37067 1.23056 1.23463 0.86520 0.79564 0.79228 0.82327 1.20784 1.21396 1.19637 1.61955 1.59007 1.01985 1.04200 1.22349 0.98877 0.97784 0.92995 1.22103 0.87802 0.86942 0.95190 1.46808 1.35235 1.41194 1.07948 1.16173 0.81780 0.79949 0.82140 1.90965 1.40349 1.49774 1.61418 1.46553 1.36718 1.46915 1.09771 1.21038 0.94189 0.95974 0.85302 1.21762 1.02453 0.90903 0.99725 1.21096 0.95118 1.00184 0.94190 0.90181 1.22321 1.01019 1.01161 0.97660 1.21689 0.95559 0.95324 1.02452 1.21194 0.96625 0.95328 0.97850 0.90808 1.21803 0.94996 1.01710 1.01888 1.21718 0.91243 1.01774 0.99909 1.20517 0.79315 0.78975 0.89516 1.90828 1.61863 1.61905 1.16977 0.88772 0.95460 0.96969 0.92997 0.92794 0.92300 0.95940 0.92000 0.86526 0.71370 0.90710 0.89271 0.91921 0.91503 0.92252 0.91240 0.91523 0.92408 0.92557 0.92342 0.89305 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.21 8.40 37.16 0.31 -3.90 16 2 C 0.22 5.49 2.29 -68.86 -0.16 5.33 16 3 H 0.05 1.24 7.98 -51.93 -0.41 0.83 16 4 C -0.50 -13.90 7.67 -34.44 -0.26 -14.16 16 5 H 0.07 1.98 7.50 -52.49 -0.39 1.58 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.90 -25.46 11.30 55.43 0.63 -24.84 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 12 N -0.55 -12.20 4.79 -240.20 -1.15 -13.35 16 13 C 0.03 0.57 8.94 60.07 0.54 1.11 16 14 C 0.29 5.97 3.95 -63.32 -0.25 5.72 16 15 N -0.57 -10.07 2.81 -124.11 -0.35 -10.42 16 16 C 0.70 11.34 7.87 -87.82 -0.69 10.65 16 17 O -0.55 -10.39 16.07 5.33 0.09 -10.30 16 18 N -0.73 -8.54 4.29 -53.87 -0.23 -8.77 16 19 C 0.13 1.47 0.83 -133.11 -0.11 1.36 16 20 C -0.11 -1.02 4.49 -26.95 -0.12 -1.14 16 21 C -0.09 -0.59 3.20 -90.57 -0.29 -0.88 16 22 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 23 C -0.16 -1.05 7.58 37.16 0.28 -0.77 16 24 C -0.11 -0.71 4.72 -26.73 -0.13 -0.84 16 25 C -0.09 -0.68 2.39 -90.57 -0.22 -0.89 16 26 H 0.07 0.53 5.56 -51.93 -0.29 0.24 16 27 C -0.15 -1.00 9.20 37.15 0.34 -0.66 16 28 C -0.11 -1.11 4.28 -26.95 -0.12 -1.23 16 29 C 0.53 8.92 6.94 -10.71 -0.07 8.85 16 30 O -0.45 -9.03 17.77 5.59 0.10 -8.93 16 31 H 0.09 2.50 5.98 -51.93 -0.31 2.19 16 32 H 0.03 0.62 6.50 -51.93 -0.34 0.28 16 33 H 0.01 0.26 7.00 -51.93 -0.36 -0.11 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.05 1.05 6.09 -51.93 -0.32 0.74 16 36 H 0.06 1.14 8.04 -51.93 -0.42 0.72 16 37 H 0.02 0.45 6.86 -51.93 -0.36 0.09 16 38 H 0.06 1.26 7.11 -51.93 -0.37 0.89 16 39 H 0.12 2.62 6.37 -51.92 -0.33 2.29 16 40 H 0.43 4.12 4.73 -40.82 -0.19 3.92 16 41 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 42 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.39 3.75 -51.93 -0.19 0.19 16 44 H 0.07 0.50 6.95 -51.93 -0.36 0.14 16 45 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 50 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 52 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 384.15 15.07 5.79 5.79 Total: -1.00 -31.23 384.15 -9.62 -40.85 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -8.43 Total: 2.99 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: -1.04 Total: 10.14 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -1.10 Total: -57.38 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: 0.18 Total: -19.23 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.23 -9.62 -40.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245638520.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.050 kcal (2) G-P(sol) polarization free energy of solvation -31.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds