Wall clock time and date at job start Tue Mar 31 2020 20:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47127 * 2 1 4 4 C 1.50701 * 109.47249 * 240.00283 * 2 1 3 5 5 H 1.08012 * 119.99924 * 245.18955 * 4 2 1 6 6 C 1.37879 * 120.00198 * 65.18041 * 4 2 1 7 7 N 1.31520 * 119.99647 * 9.19269 * 6 4 2 8 8 Si 1.86792 * 120.00183 * 189.18859 * 6 4 2 9 9 H 1.48497 * 109.47430 * 94.97583 * 8 6 4 10 10 H 1.48502 * 109.47086 * 214.97684 * 8 6 4 11 11 H 1.48503 * 109.47426 * 334.97737 * 8 6 4 12 12 N 1.46905 * 109.46971 * 120.00315 * 2 1 3 13 13 C 1.46907 * 110.99850 * 174.25264 * 12 2 1 14 14 C 1.46895 * 111.00174 * 298.20439 * 12 2 1 15 15 N 1.46499 * 109.47429 * 155.94552 * 14 12 2 16 16 C 1.33858 * 124.19526 * 90.02394 * 15 14 12 17 17 O 1.21542 * 123.79476 * 0.28848 * 16 15 14 18 18 N 1.34674 * 112.42113 * 180.02562 * 16 15 14 19 19 C 1.46868 * 106.42433 * 359.97438 * 18 16 15 20 20 C 1.34917 * 124.19340 * 270.04990 * 15 14 12 21 21 O 1.21236 * 127.25342 * 0.02562 * 20 15 14 22 22 C 1.52464 * 110.48335 * 118.54873 * 19 18 16 23 23 H 1.08998 * 109.45440 * 61.31242 * 22 19 18 24 24 C 1.53009 * 109.45188 * 301.36019 * 22 19 18 25 25 C 1.53074 * 109.58638 * 181.32577 * 22 19 18 26 26 C 1.53001 * 109.42351 * 300.86349 * 25 22 19 27 27 C 1.53008 * 109.50984 * 60.46489 * 26 25 22 28 28 C 1.52465 * 110.48732 * 241.45979 * 19 18 16 29 29 H 1.09003 * 109.45128 * 298.70475 * 28 19 18 30 30 C 1.53005 * 109.45217 * 58.63414 * 28 19 18 31 31 H 1.09002 * 109.47298 * 305.79609 * 1 2 3 32 32 H 1.08999 * 109.47532 * 65.79862 * 1 2 3 33 33 H 1.09005 * 109.47183 * 185.79342 * 1 2 3 34 34 H 0.96996 * 119.99677 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.47040 * 183.95368 * 13 12 2 36 36 H 1.09004 * 109.46821 * 303.95217 * 13 12 2 37 37 H 1.08998 * 109.46801 * 63.94933 * 13 12 2 38 38 H 1.08998 * 109.46916 * 35.94490 * 14 12 2 39 39 H 1.08999 * 109.47132 * 275.95132 * 14 12 2 40 40 H 0.96998 * 126.79421 * 180.02562 * 18 16 15 41 41 H 1.08995 * 109.47222 * 60.00335 * 24 22 19 42 42 H 1.09003 * 109.47006 * 180.02562 * 24 22 19 43 43 H 1.09000 * 109.46632 * 299.99781 * 24 22 19 44 44 H 1.09008 * 109.47696 * 60.84100 * 25 22 19 45 45 H 1.08997 * 109.48242 * 180.87129 * 25 22 19 46 46 H 1.08997 * 109.46638 * 180.47820 * 26 25 22 47 47 H 1.09000 * 109.46451 * 300.45766 * 26 25 22 48 48 H 1.09003 * 109.48005 * 59.51555 * 27 26 25 49 49 H 1.08996 * 109.48316 * 179.52809 * 27 26 25 50 50 H 1.09002 * 109.47020 * 60.00070 * 30 28 19 51 51 H 1.09002 * 109.46951 * 179.97438 * 30 28 19 52 52 H 1.08996 * 109.47185 * 300.00090 * 30 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5824 -1.6348 -1.1336 6 6 1.7896 -0.1803 -2.4800 7 7 1.2825 1.0278 -2.5945 8 14 2.1811 -1.1778 -4.0099 9 1 0.9590 -1.8890 -4.4634 10 1 2.6532 -0.2695 -5.0857 11 1 3.2426 -2.1681 -3.6970 12 7 2.0196 -0.6926 1.1994 13 6 3.4816 -0.8323 1.1667 14 6 1.5840 -0.0022 2.4207 15 7 1.5653 -0.9503 3.5374 16 6 2.6081 -1.1838 4.3436 17 8 3.6834 -0.6275 4.2363 18 7 2.3302 -2.1003 5.2904 19 6 0.9372 -2.5121 5.0737 20 6 0.4950 -1.6966 3.8805 21 8 -0.5922 -1.7107 3.3443 22 6 0.8644 -4.0016 4.7564 23 1 1.2551 -4.5718 5.5992 24 6 1.6997 -4.2983 3.5093 25 6 -0.5911 -4.4015 4.5020 26 6 -1.4298 -4.0854 5.7420 27 6 -1.3666 -2.5845 6.0327 28 6 0.0858 -2.1773 6.2934 29 1 0.4646 -2.7189 7.1602 30 6 0.1526 -0.6729 6.5640 31 1 -0.3634 0.6011 0.8335 32 1 -0.3634 0.4213 -0.9373 33 1 -0.3634 -1.0225 0.1037 34 1 1.1120 1.4009 -3.4735 35 1 3.8109 -1.4094 2.0308 36 1 3.7770 -1.3467 0.2522 37 1 3.9416 0.1556 1.1927 38 1 0.5833 0.4033 2.2715 39 1 2.2753 0.8100 2.6451 40 1 2.9309 -2.4239 5.9798 41 1 2.7366 -4.0157 3.6908 42 1 1.6475 -5.3631 3.2819 43 1 1.3097 -3.7277 2.6665 44 1 -0.9779 -3.8429 3.6496 45 1 -0.6431 -5.4695 4.2906 46 1 -2.4648 -4.3777 5.5647 47 1 -1.0377 -4.6375 6.5961 48 1 -1.7508 -2.0317 5.1754 49 1 -1.9709 -2.3585 6.9112 50 1 -0.2252 -0.1307 5.6971 51 1 -0.4564 -0.4332 7.4357 52 1 1.1864 -0.3830 6.7516 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246110814.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:01 Heat of formation + Delta-G solvation = -43.312633 kcal Electronic energy + Delta-G solvation = -32910.855118 eV Core-core repulsion = 28911.044823 eV Total energy + Delta-G solvation = -3999.810295 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.83931 -39.12185 -37.88455 -36.74683 -35.69991 -33.91693 -33.81187 -32.35700 -30.68893 -29.25395 -27.42482 -26.81141 -26.40651 -24.75217 -23.80050 -23.15806 -21.66715 -21.24393 -21.01933 -19.64577 -19.14747 -17.82681 -16.97613 -16.55706 -16.07133 -15.47808 -15.40015 -15.10278 -14.87675 -14.61138 -14.28880 -14.26530 -13.96166 -13.57124 -13.50203 -13.39753 -13.03317 -12.82328 -12.58264 -12.57300 -12.44607 -11.97882 -11.92286 -11.70524 -11.49420 -11.21471 -11.09534 -11.03751 -10.99108 -10.83079 -10.72342 -10.67593 -10.62603 -10.31100 -10.24777 -10.16651 -9.98678 -9.62267 -9.50135 -9.30191 -8.88076 -8.45456 -7.35147 -6.05371 -4.06120 1.87930 2.44993 3.19627 3.30050 3.31299 3.38254 3.41636 3.94047 4.21677 4.35730 4.41416 4.69091 4.77020 4.87647 5.01408 5.02863 5.07883 5.19053 5.26728 5.28230 5.30630 5.45113 5.46647 5.57132 5.67456 5.71676 5.74294 5.77554 5.84154 5.91152 5.93319 5.97577 6.02435 6.07961 6.12195 6.25533 6.29470 6.36825 6.47216 6.74318 6.80871 6.87612 7.00342 7.07379 7.30808 7.38894 7.61721 7.68191 7.79849 8.05614 8.18411 8.34450 8.51588 8.99260 9.57459 11.03859 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016371 B = 0.003771 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.959891 B = 7422.643437 C = 7781.252654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.216 3.784 3 H 0.010 0.990 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.546 5.546 13 C 0.041 3.959 14 C 0.275 3.725 15 N -0.563 5.563 16 C 0.705 3.295 17 O -0.545 6.545 18 N -0.725 5.725 19 C 0.128 3.872 20 C 0.544 3.456 21 O -0.454 6.454 22 C -0.079 4.079 23 H 0.084 0.916 24 C -0.156 4.156 25 C -0.125 4.125 26 C -0.115 4.115 27 C -0.124 4.124 28 C -0.080 4.080 29 H 0.086 0.914 30 C -0.155 4.155 31 H 0.011 0.989 32 H 0.070 0.930 33 H 0.040 0.960 34 H 0.261 0.739 35 H 0.045 0.955 36 H 0.078 0.922 37 H 0.017 0.983 38 H 0.106 0.894 39 H 0.064 0.936 40 H 0.433 0.567 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.059 0.941 48 H 0.084 0.916 49 H 0.068 0.932 50 H 0.055 0.945 51 H 0.065 0.935 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.508 -8.827 20.772 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.110 3.890 3 H 0.028 0.972 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.273 5.273 13 C -0.107 4.107 14 C 0.064 3.936 15 N -0.310 5.310 16 C 0.406 3.594 17 O -0.419 6.419 18 N -0.388 5.388 19 C 0.037 3.963 20 C 0.330 3.670 21 O -0.323 6.323 22 C -0.098 4.098 23 H 0.102 0.898 24 C -0.213 4.213 25 C -0.163 4.163 26 C -0.153 4.153 27 C -0.162 4.162 28 C -0.100 4.100 29 H 0.105 0.895 30 C -0.212 4.212 31 H 0.030 0.970 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.035 0.965 38 H 0.123 0.877 39 H 0.081 0.919 40 H 0.277 0.723 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.078 0.922 48 H 0.102 0.898 49 H 0.087 0.913 50 H 0.074 0.926 51 H 0.084 0.916 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.794 -8.750 20.135 22.280 hybrid contribution 0.933 0.134 -0.588 1.111 sum -2.861 -8.616 19.547 21.553 Atomic orbital electron populations 1.21785 0.97670 0.99231 0.99727 1.19258 0.92012 0.92657 0.85032 0.97215 1.21059 1.35407 1.08274 0.89642 0.91790 1.24911 0.95363 0.94678 0.98983 1.69971 1.44833 1.14270 1.23787 0.86542 0.78550 0.80028 0.82649 1.20663 1.21382 1.19877 1.61837 1.11533 1.51891 1.02002 1.22254 0.87363 0.99529 1.01572 1.22168 1.02954 0.86447 0.82027 1.46725 1.13077 1.41080 1.30083 1.15970 0.83770 0.80077 0.79586 1.90992 1.23224 1.53868 1.73821 1.45539 1.13951 1.44584 1.34744 1.21198 0.82948 0.96576 0.95543 1.20328 0.84150 0.78924 0.83613 1.90735 1.21289 1.63549 1.56713 1.21191 0.97614 0.91339 0.99693 0.89772 1.21924 0.99849 1.02366 0.97209 1.21762 0.93037 1.01807 0.99649 1.21493 1.00280 0.95775 0.97722 1.21753 0.94443 0.96943 1.03017 1.21203 0.95809 0.97455 0.95542 0.89543 1.21917 1.02392 0.94639 1.02266 0.97021 0.91091 0.94115 0.92924 0.93660 0.90343 0.96471 0.87665 0.91859 0.72316 0.92335 0.91809 0.91506 0.89581 0.91252 0.91501 0.92221 0.89754 0.91337 0.92611 0.91598 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.83 37.16 0.33 -2.72 16 2 C 0.22 5.43 1.93 -68.86 -0.13 5.30 16 3 H 0.01 0.28 8.09 -51.93 -0.42 -0.14 16 4 C -0.51 -13.77 7.67 -34.44 -0.26 -14.04 16 5 H 0.06 1.76 6.52 -52.48 -0.34 1.42 16 6 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -25.36 12.13 55.43 0.67 -24.69 16 8 Si 0.89 21.38 29.55 -169.99 -5.02 16.36 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.55 -12.00 4.72 -240.19 -1.13 -13.14 16 13 C 0.04 0.88 8.92 60.07 0.54 1.41 16 14 C 0.27 5.28 5.38 -63.32 -0.34 4.94 16 15 N -0.56 -9.32 2.82 -124.11 -0.35 -9.67 16 16 C 0.71 10.97 7.68 -87.83 -0.67 10.29 16 17 O -0.55 -10.14 16.09 5.33 0.09 -10.06 16 18 N -0.72 -8.03 4.37 -53.88 -0.24 -8.26 16 19 C 0.13 1.41 0.51 -133.11 -0.07 1.35 16 20 C 0.54 8.21 3.72 -10.71 -0.04 8.17 16 21 O -0.45 -7.85 13.85 5.60 0.08 -7.77 16 22 C -0.08 -0.78 2.28 -90.85 -0.21 -0.99 16 23 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 24 C -0.16 -1.89 8.65 37.16 0.32 -1.57 16 25 C -0.12 -1.24 4.95 -26.69 -0.13 -1.37 16 26 C -0.12 -0.94 5.91 -26.73 -0.16 -1.10 16 27 C -0.12 -1.10 4.95 -26.69 -0.13 -1.24 16 28 C -0.08 -0.71 2.28 -90.85 -0.21 -0.92 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 C -0.15 -1.46 8.65 37.16 0.32 -1.13 16 31 H 0.01 0.24 6.32 -51.93 -0.33 -0.09 16 32 H 0.07 1.86 6.75 -51.93 -0.35 1.51 16 33 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.04 0.92 6.10 -51.93 -0.32 0.60 16 36 H 0.08 1.76 6.09 -51.93 -0.32 1.45 16 37 H 0.02 0.37 8.07 -51.93 -0.42 -0.05 16 38 H 0.11 2.04 5.54 -51.93 -0.29 1.75 16 39 H 0.06 1.22 7.60 -51.93 -0.39 0.83 16 40 H 0.43 3.58 8.96 -40.82 -0.37 3.21 16 41 H 0.06 0.73 7.61 -51.93 -0.40 0.33 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 1.04 7.14 -51.93 -0.37 0.67 16 44 H 0.09 1.11 6.11 -51.92 -0.32 0.79 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.08 0.97 6.12 -51.93 -0.32 0.65 16 49 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.05 0.64 7.14 -51.93 -0.37 0.27 16 51 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 52 H 0.06 0.58 7.61 -51.93 -0.40 0.19 16 LS Contribution 385.69 15.07 5.81 5.81 Total: -1.00 -30.72 385.69 -9.68 -40.41 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -8.65 Total: 2.99 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: -0.94 Total: 8.02 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -1.05 Total: -55.76 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: 0.16 Total: -17.83 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.72 -9.68 -40.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246110814.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.904 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds