Wall clock time and date at job start Tue Mar 31 2020 20:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47401 * 2 1 4 4 C 1.50707 * 109.46956 * 240.00464 * 2 1 3 5 5 H 1.08002 * 119.99867 * 244.97208 * 4 2 1 6 6 C 1.37875 * 120.00162 * 64.96857 * 4 2 1 7 7 N 1.31516 * 119.99658 * 7.92685 * 6 4 2 8 8 Si 1.86793 * 120.00271 * 187.92980 * 6 4 2 9 9 H 1.48505 * 109.47002 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47328 * 240.00262 * 8 6 4 11 11 H 1.48496 * 109.47787 * 119.99922 * 8 6 4 12 12 N 1.46895 * 109.47364 * 120.00347 * 2 1 3 13 13 C 1.46902 * 111.00188 * 174.30528 * 12 2 1 14 14 C 1.46895 * 111.00139 * 298.26125 * 12 2 1 15 15 N 1.46500 * 109.47147 * 155.88642 * 14 12 2 16 16 C 1.33869 * 124.19330 * 90.02823 * 15 14 12 17 17 O 1.21534 * 123.79196 * 359.97438 * 16 15 14 18 18 N 1.34677 * 112.41914 * 179.97438 * 16 15 14 19 19 C 1.46851 * 106.41944 * 359.97438 * 18 16 15 20 20 C 1.34916 * 124.19292 * 269.72242 * 15 14 12 21 21 O 1.21233 * 127.25905 * 0.04073 * 20 15 14 22 22 C 1.52475 * 110.49148 * 241.43879 * 19 18 16 23 23 H 1.09003 * 109.46309 * 175.98368 * 22 19 18 24 24 C 1.53009 * 109.45970 * 56.01637 * 22 19 18 25 25 C 1.53092 * 109.52393 * 296.00510 * 22 19 18 26 26 C 1.53004 * 109.41673 * 300.83287 * 25 22 19 27 27 C 1.53014 * 109.56257 * 60.40326 * 26 25 22 28 28 C 1.52477 * 110.48557 * 118.55357 * 19 18 16 29 29 H 1.08998 * 109.46318 * 303.97927 * 28 19 18 30 30 C 1.53003 * 109.45858 * 184.00871 * 28 19 18 31 31 H 1.09003 * 109.46993 * 186.69916 * 1 2 3 32 32 H 1.08999 * 109.46845 * 306.69713 * 1 2 3 33 33 H 1.08996 * 109.47331 * 66.69607 * 1 2 3 34 34 H 0.96999 * 120.00133 * 2.89050 * 7 6 4 35 35 H 1.09000 * 109.47078 * 59.99856 * 13 12 2 36 36 H 1.08999 * 109.47601 * 180.02562 * 13 12 2 37 37 H 1.09001 * 109.47239 * 300.00596 * 13 12 2 38 38 H 1.09005 * 109.47010 * 275.88494 * 14 12 2 39 39 H 1.08995 * 109.46855 * 35.88694 * 14 12 2 40 40 H 0.96999 * 126.78841 * 180.02562 * 18 16 15 41 41 H 1.09000 * 109.46896 * 60.00304 * 24 22 19 42 42 H 1.09001 * 109.46764 * 179.97438 * 24 22 19 43 43 H 1.08996 * 109.47225 * 300.00105 * 24 22 19 44 44 H 1.09000 * 109.47927 * 180.85190 * 25 22 19 45 45 H 1.08991 * 109.49213 * 60.82394 * 25 22 19 46 46 H 1.08997 * 109.45544 * 300.37561 * 26 25 22 47 47 H 1.08994 * 109.45339 * 180.43159 * 26 25 22 48 48 H 1.08989 * 109.47867 * 179.60994 * 27 26 25 49 49 H 1.08998 * 109.48529 * 59.57825 * 27 26 25 50 50 H 1.08999 * 109.46961 * 60.00198 * 30 28 19 51 51 H 1.09001 * 109.46349 * 180.02562 * 30 28 19 52 52 H 1.09000 * 109.47238 * 299.99954 * 30 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5853 -1.6329 -1.1336 6 6 1.7858 -0.1825 -2.4802 7 7 1.2517 1.0139 -2.5950 8 14 2.2101 -1.1666 -4.0102 9 1 2.7959 -2.4719 -3.6124 10 1 3.1938 -0.4116 -4.8273 11 1 0.9788 -1.3984 -4.8071 12 7 2.0197 -0.6925 1.1993 13 6 3.4818 -0.8311 1.1672 14 6 1.5830 -0.0029 2.4206 15 7 1.5633 -0.9518 3.5367 16 6 2.6054 -1.1858 4.3437 17 8 3.6824 -0.6334 4.2343 18 7 2.3264 -2.1021 5.2904 19 6 0.9335 -2.5131 5.0725 20 6 0.4907 -1.6937 3.8822 21 8 -0.5980 -1.7028 3.3490 22 6 0.0812 -2.1784 6.2917 23 1 -0.9604 -2.4245 6.0853 24 6 0.2002 -0.6849 6.6023 25 6 0.5684 -2.9900 7.4949 26 6 0.4683 -4.4830 7.1756 27 6 1.3445 -4.8077 5.9640 28 6 0.8601 -4.0027 4.7552 29 1 1.4927 -4.2225 3.8953 30 6 -0.5864 -4.3849 4.4348 31 1 -0.3633 -1.0207 0.1199 32 1 -0.3633 0.6141 0.8240 33 1 -0.3634 0.4065 -0.9438 34 1 1.0700 1.5420 -1.8019 35 1 3.9395 0.1571 1.1228 36 1 3.8178 -1.3475 2.0663 37 1 3.7730 -1.4060 0.2881 38 1 2.2743 0.8091 2.6463 39 1 0.5825 0.4026 2.2708 40 1 2.9265 -2.4259 5.9802 41 1 -0.1475 -0.1069 5.7461 42 1 -0.4094 -0.4454 7.4736 43 1 1.2418 -0.4385 6.8082 44 1 -0.0509 -2.7614 8.3623 45 1 1.6054 -2.7332 7.7109 46 1 -0.5678 -4.7379 6.9531 47 1 0.8078 -5.0615 8.0347 48 1 1.2776 -5.8726 5.7420 49 1 2.3797 -4.5464 6.1835 50 1 -0.9311 -3.8125 3.5736 51 1 -0.6390 -5.4498 4.2084 52 1 -1.2193 -4.1648 5.2944 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246110819.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:08 Heat of formation + Delta-G solvation = -65.629150 kcal Electronic energy + Delta-G solvation = -32574.933735 eV Core-core repulsion = 28574.155724 eV Total energy + Delta-G solvation = -4000.778012 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.00361 -40.35547 -39.56895 -38.74990 -36.92789 -35.51009 -34.40401 -34.04706 -31.91779 -31.13348 -28.94841 -27.74301 -27.44176 -26.57283 -25.45177 -24.44527 -23.47216 -22.48592 -22.03073 -21.14156 -20.06452 -19.10333 -18.79929 -18.11335 -17.48173 -16.97106 -16.80284 -16.69185 -16.27520 -15.88948 -15.70112 -15.61917 -15.37560 -15.33161 -14.92404 -14.46018 -14.31210 -14.19306 -13.80140 -13.64237 -13.43557 -13.39426 -13.20655 -13.16284 -12.80940 -12.78212 -12.58918 -12.51670 -12.44015 -12.33327 -12.12449 -12.07776 -11.94264 -11.89940 -11.65752 -11.46276 -11.16451 -11.13307 -10.79287 -10.55261 -10.54692 -10.37576 -9.35398 -8.62200 -6.33707 0.56445 1.10326 1.53080 1.61256 1.78373 1.88622 2.11014 2.54703 2.82208 3.09115 3.18378 3.30587 3.46454 3.69586 3.89974 3.98254 4.01489 4.05290 4.18298 4.22710 4.35228 4.38442 4.41382 4.44442 4.51533 4.55437 4.58744 4.64772 4.67125 4.68185 4.80058 4.82685 4.91399 4.96583 4.97883 5.06678 5.09357 5.12208 5.20546 5.23061 5.28834 5.35475 5.37957 5.38388 5.61169 5.73615 5.77622 5.87437 6.04706 6.24323 6.34338 6.42125 6.62008 7.05656 7.43224 8.74720 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018732 B = 0.003407 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.379269 B = 8216.210374 C = 8476.350463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.209 3.791 3 H -0.030 1.030 4 C -0.595 4.595 5 H 0.050 0.950 6 C -0.024 4.024 7 N -0.931 5.931 8 Si 1.118 2.882 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.279 1.279 12 N -0.547 5.547 13 C 0.054 3.946 14 C 0.280 3.720 15 N -0.571 5.571 16 C 0.701 3.299 17 O -0.577 6.577 18 N -0.693 5.693 19 C 0.144 3.856 20 C 0.529 3.471 21 O -0.483 6.483 22 C -0.081 4.081 23 H 0.097 0.903 24 C -0.153 4.153 25 C -0.106 4.106 26 C -0.122 4.122 27 C -0.106 4.106 28 C -0.082 4.082 29 H 0.059 0.941 30 C -0.155 4.155 31 H 0.040 0.960 32 H 0.037 0.963 33 H 0.044 0.956 34 H 0.259 0.741 35 H 0.009 0.991 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.101 0.899 40 H 0.449 0.551 41 H 0.027 0.973 42 H 0.087 0.913 43 H 0.058 0.942 44 H 0.090 0.910 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.071 0.929 50 H 0.041 0.959 51 H 0.075 0.925 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.437 -11.908 25.424 28.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.102 3.898 3 H -0.012 1.012 4 C -0.634 4.634 5 H 0.068 0.932 6 C -0.223 4.223 7 N -0.568 5.568 8 Si 0.941 3.059 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.204 1.204 12 N -0.273 5.273 13 C -0.094 4.094 14 C 0.069 3.931 15 N -0.317 5.317 16 C 0.402 3.598 17 O -0.453 6.453 18 N -0.358 5.358 19 C 0.053 3.947 20 C 0.317 3.683 21 O -0.353 6.353 22 C -0.101 4.101 23 H 0.115 0.885 24 C -0.211 4.211 25 C -0.143 4.143 26 C -0.159 4.159 27 C -0.144 4.144 28 C -0.102 4.102 29 H 0.077 0.923 30 C -0.213 4.213 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.028 0.972 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.119 0.881 40 H 0.297 0.703 41 H 0.046 0.954 42 H 0.106 0.894 43 H 0.077 0.923 44 H 0.109 0.891 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.105 0.895 48 H 0.102 0.898 49 H 0.090 0.910 50 H 0.060 0.940 51 H 0.094 0.906 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.745 -11.988 23.357 26.397 hybrid contribution 0.759 1.322 1.173 1.924 sum -1.985 -10.667 24.531 26.823 Atomic orbital electron populations 1.21706 0.97021 0.99781 0.99272 1.19192 0.92414 0.90764 0.87411 1.01216 1.22146 1.38755 1.10255 0.92195 0.93151 1.27109 0.93779 0.97025 1.04351 1.70851 1.42405 1.10558 1.33029 0.82909 0.76820 0.74224 0.71996 1.20063 1.20671 1.20423 1.61710 1.12001 1.51775 1.01799 1.22111 0.86763 0.99168 1.01347 1.21944 1.02381 0.87085 0.81717 1.46661 1.14307 1.41263 1.29497 1.16066 0.82945 0.80675 0.80097 1.90968 1.24098 1.55505 1.74763 1.45393 1.14298 1.42612 1.33544 1.21216 0.83001 0.96272 0.94210 1.21289 0.83445 0.78968 0.84630 1.90740 1.22281 1.64187 1.58124 1.21350 0.99416 0.96536 0.92755 0.88497 1.21913 1.02694 0.94573 1.01882 1.21605 1.02466 0.94413 0.95821 1.21642 1.00876 0.95607 0.97755 1.21581 0.99899 0.99973 0.92920 1.21216 0.99207 0.89591 1.00201 0.92263 1.22020 0.94437 1.02292 1.02504 0.94050 0.94432 0.93719 0.93046 0.97242 0.92076 0.91819 0.91905 0.88101 0.70285 0.95427 0.89370 0.92314 0.89136 0.90935 0.90812 0.89519 0.89838 0.91048 0.94018 0.90619 0.90041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.95 8.61 71.98 0.62 -5.33 16 2 C 0.21 10.96 1.69 44.17 0.07 11.03 16 3 H -0.03 -1.67 7.48 -2.39 -0.02 -1.69 16 4 C -0.60 -33.88 7.74 25.60 0.20 -33.68 16 5 H 0.05 2.91 6.49 -2.91 -0.02 2.89 16 6 C -0.02 -1.35 5.17 84.65 0.44 -0.92 16 7 N -0.93 -56.27 12.85 21.45 0.28 -56.00 16 8 Si 1.12 51.10 29.91 68.60 2.05 53.16 16 9 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 N -0.55 -25.21 4.72 -913.85 -4.31 -29.53 16 13 C 0.05 2.43 8.93 127.69 1.14 3.57 16 14 C 0.28 11.18 5.39 170.81 0.92 12.10 16 15 N -0.57 -19.39 2.81 -783.68 -2.21 -21.59 16 16 C 0.70 21.68 7.76 179.37 1.39 23.07 16 17 O -0.58 -21.42 15.97 -3.82 -0.06 -21.48 16 18 N -0.69 -14.27 4.37 -442.69 -1.93 -16.20 16 19 C 0.14 2.94 0.32 2.58 0.00 2.94 16 20 C 0.53 16.35 5.40 87.77 0.47 16.82 16 21 O -0.48 -17.55 15.68 -2.89 -0.05 -17.60 16 22 C -0.08 -1.20 1.85 -10.93 -0.02 -1.22 16 23 H 0.10 1.49 6.63 -2.39 -0.02 1.47 16 24 C -0.15 -2.54 8.64 71.99 0.62 -1.91 16 25 C -0.11 -0.85 5.09 30.63 0.16 -0.69 16 26 C -0.12 -0.85 5.64 30.60 0.17 -0.67 16 27 C -0.11 -1.09 5.33 30.63 0.16 -0.93 16 28 C -0.08 -1.49 2.44 -10.93 -0.03 -1.51 16 29 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 30 C -0.16 -2.87 8.24 71.98 0.59 -2.28 16 31 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.04 1.66 6.36 -2.39 -0.02 1.64 16 33 H 0.04 2.38 6.33 -2.39 -0.02 2.36 16 34 H 0.26 15.83 6.21 -92.71 -0.58 15.26 16 35 H 0.01 0.41 8.13 -2.39 -0.02 0.39 16 36 H 0.06 2.56 5.81 -2.39 -0.01 2.55 16 37 H 0.06 3.00 6.23 -2.39 -0.01 2.98 16 38 H 0.06 2.51 7.65 -2.38 -0.02 2.49 16 39 H 0.10 4.04 5.55 -2.39 -0.01 4.03 16 40 H 0.45 6.46 7.71 -92.71 -0.71 5.75 16 41 H 0.03 0.60 7.21 -2.39 -0.02 0.58 16 42 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.06 0.99 7.54 -2.39 -0.02 0.98 16 44 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.07 0.50 7.33 -2.39 -0.02 0.49 16 46 H 0.07 0.52 6.42 -2.39 -0.02 0.51 16 47 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 48 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.07 0.65 7.33 -2.39 -0.02 0.63 16 50 H 0.04 1.09 5.96 -2.39 -0.01 1.07 16 51 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 52 H 0.08 1.19 4.94 -2.39 -0.01 1.18 16 Total: -1.00 -71.78 380.18 1.10 -70.68 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.42 Total: 18.18 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: 6.92 Total: 20.38 kcal Atomic # 7 Polarization: -115.14 SS G_CDS: -8.18 Total: -123.32 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -0.11 Total: -39.08 kcal Atomic # 14 Polarization: 51.10 SS G_CDS: 2.05 Total: 53.16 kcal Total: -71.78 1.10 -70.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246110819.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.049 kcal (2) G-P(sol) polarization free energy of solvation -71.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds