Wall clock time and date at job start Tue Mar 31 2020 20:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46833 * 2 1 4 4 C 1.50699 * 109.46949 * 120.00154 * 2 1 3 5 5 H 1.07998 * 120.00109 * 120.00307 * 4 2 1 6 6 C 1.37878 * 120.00043 * 299.99417 * 4 2 1 7 7 N 1.31517 * 120.00064 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99796 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.46993 * 60.00580 * 8 6 4 10 10 H 1.48504 * 109.46735 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47270 * 300.00115 * 8 6 4 12 12 N 1.46902 * 109.46807 * 239.99907 * 2 1 3 13 13 C 1.46900 * 111.00016 * 306.04641 * 12 2 1 14 14 C 1.46905 * 110.99726 * 70.00481 * 12 2 1 15 15 N 1.46505 * 109.46712 * 154.99860 * 14 12 2 16 16 C 1.33861 * 124.19372 * 90.02343 * 15 14 12 17 17 O 1.21539 * 123.79274 * 359.93725 * 16 15 14 18 18 N 1.34675 * 112.41980 * 179.97438 * 16 15 14 19 19 C 1.46869 * 106.42679 * 359.97438 * 18 16 15 20 20 C 1.34916 * 124.19615 * 269.97890 * 15 14 12 21 21 O 1.21239 * 127.24982 * 0.02562 * 20 15 14 22 22 C 1.52464 * 110.47931 * 118.55056 * 19 18 16 23 23 H 1.09000 * 109.45800 * 61.30802 * 22 19 18 24 24 C 1.52998 * 109.45612 * 301.35050 * 22 19 18 25 25 C 1.53086 * 109.58562 * 181.31943 * 22 19 18 26 26 C 1.53006 * 109.41867 * 300.86095 * 25 22 19 27 27 C 1.53012 * 109.50519 * 60.47323 * 26 25 22 28 28 C 1.52460 * 110.48315 * 241.46011 * 19 18 16 29 29 H 1.08995 * 109.45531 * 298.70874 * 28 19 18 30 30 C 1.53002 * 109.45422 * 58.64399 * 28 19 18 31 31 H 1.09002 * 109.47031 * 59.99935 * 1 2 3 32 32 H 1.08996 * 109.47158 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46862 * 300.00425 * 1 2 3 34 34 H 0.96997 * 120.00367 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.46674 * 183.95274 * 13 12 2 36 36 H 1.08993 * 109.46959 * 303.95453 * 13 12 2 37 37 H 1.08996 * 109.46778 * 63.95748 * 13 12 2 38 38 H 1.08994 * 109.47575 * 34.99511 * 14 12 2 39 39 H 1.08999 * 109.46641 * 274.99395 * 14 12 2 40 40 H 0.96999 * 126.79184 * 179.73474 * 18 16 15 41 41 H 1.08998 * 109.46858 * 60.00325 * 24 22 19 42 42 H 1.09001 * 109.47695 * 180.02562 * 24 22 19 43 43 H 1.09001 * 109.47354 * 300.00338 * 24 22 19 44 44 H 1.08998 * 109.47929 * 60.84644 * 25 22 19 45 45 H 1.08993 * 109.48021 * 180.88283 * 25 22 19 46 46 H 1.08999 * 109.45946 * 180.47756 * 26 25 22 47 47 H 1.08996 * 109.46928 * 300.46151 * 26 25 22 48 48 H 1.09009 * 109.48119 * 59.50405 * 27 26 25 49 49 H 1.09005 * 109.48324 * 179.52238 * 27 26 25 50 50 H 1.09001 * 109.46918 * 59.99990 * 30 28 19 51 51 H 1.09000 * 109.47550 * 179.97438 * 30 28 19 52 52 H 1.08996 * 109.47024 * 300.00028 * 30 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8297 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.8075 -1.1190 4.0077 10 1 1.8270 -0.4199 5.2204 11 1 1.8280 -2.5198 4.0081 12 7 2.0196 -0.6925 -1.1995 13 6 1.4342 -2.0355 -1.3078 14 6 1.7529 0.0973 -2.4091 15 7 2.7156 -0.2664 -3.4518 16 6 2.5204 -1.2400 -4.3495 17 8 1.5197 -1.9284 -4.3932 18 7 3.5577 -1.3716 -5.1983 19 6 4.5472 -0.3601 -4.8048 20 6 3.9086 0.3390 -3.6269 21 8 4.3707 1.2519 -2.9766 22 6 5.8526 -1.0263 -4.3844 23 1 6.2618 -1.5862 -5.2254 24 6 5.5855 -1.9806 -3.2187 25 6 6.8571 0.0432 -3.9477 26 6 7.1081 1.0092 -5.1074 27 6 5.7942 1.6875 -5.5009 28 6 4.7856 0.6246 -5.9440 29 1 5.1778 0.0905 -6.8094 30 6 3.4648 1.3002 -6.3183 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 0.7083 1.1610 3.4844 35 1 1.8663 -2.5521 -2.1648 36 1 1.6465 -2.5987 -0.3991 37 1 0.3555 -1.9520 -1.4399 38 1 1.8499 1.1583 -2.1790 39 1 0.7417 -0.1073 -2.7608 40 1 3.6372 -2.0105 -5.9237 41 1 4.8720 -2.7435 -3.5300 42 1 6.5187 -2.4567 -2.9176 43 1 5.1756 -1.4212 -2.3778 44 1 6.4553 0.5934 -3.0968 45 1 7.7948 -0.4337 -3.6625 46 1 7.8297 1.7660 -4.7999 47 1 7.5019 0.4575 -5.9610 48 1 5.3958 2.2323 -4.6449 49 1 5.9750 2.3818 -6.3215 50 1 3.0716 1.8337 -5.4529 51 1 3.6349 2.0047 -7.1325 52 1 2.7470 0.5439 -6.6358 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246110823.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:19 Heat of formation + Delta-G solvation = -43.188525 kcal Electronic energy + Delta-G solvation = -32825.705148 eV Core-core repulsion = 28825.900234 eV Total energy + Delta-G solvation = -3999.804913 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -42.83385 -39.12450 -37.89189 -36.90669 -35.70280 -33.90728 -33.85584 -32.36664 -30.68418 -28.72189 -27.20872 -26.70466 -26.39425 -25.22741 -24.11297 -23.22547 -21.66568 -21.24951 -21.00971 -19.46457 -19.11346 -17.81953 -17.01343 -16.40740 -16.08450 -15.50090 -15.37522 -15.10815 -14.81467 -14.60666 -14.35919 -14.26550 -13.78225 -13.60609 -13.52487 -13.45184 -13.04366 -12.94355 -12.57758 -12.56092 -12.46778 -11.91753 -11.69830 -11.56744 -11.49088 -11.26158 -11.14892 -11.00810 -10.98016 -10.85153 -10.75671 -10.68721 -10.63906 -10.59953 -10.29742 -10.09171 -9.99320 -9.60534 -9.47989 -9.29807 -8.92605 -8.38340 -7.33958 -6.00934 -4.04505 1.88478 2.44897 3.20090 3.30063 3.33978 3.37915 3.41289 3.94597 4.22437 4.36666 4.42343 4.69982 4.78214 4.88732 5.02926 5.04200 5.08848 5.20089 5.27720 5.29849 5.31489 5.46043 5.47578 5.57944 5.68053 5.72374 5.74987 5.78389 5.84608 5.92018 5.94295 5.97529 6.03519 6.08736 6.13568 6.26627 6.28988 6.37902 6.43689 6.64412 6.80011 6.82306 6.91333 7.05072 7.28106 7.38936 7.65975 7.70340 7.80784 8.05345 8.27921 8.37057 8.51869 8.99675 9.60041 11.06219 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015316 B = 0.003852 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.722548 B = 7266.509767 C = 7837.377681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.218 3.782 3 H 0.042 0.958 4 C -0.498 4.498 5 H 0.062 0.938 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.544 5.544 13 C 0.038 3.962 14 C 0.282 3.718 15 N -0.564 5.564 16 C 0.706 3.294 17 O -0.546 6.546 18 N -0.725 5.725 19 C 0.129 3.871 20 C 0.543 3.457 21 O -0.454 6.454 22 C -0.079 4.079 23 H 0.084 0.916 24 C -0.156 4.156 25 C -0.125 4.125 26 C -0.115 4.115 27 C -0.124 4.124 28 C -0.080 4.080 29 H 0.086 0.914 30 C -0.155 4.155 31 H 0.006 0.994 32 H 0.034 0.966 33 H 0.091 0.909 34 H 0.261 0.739 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.023 0.977 38 H 0.098 0.902 39 H 0.066 0.934 40 H 0.433 0.567 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.059 0.941 48 H 0.084 0.916 49 H 0.068 0.932 50 H 0.055 0.945 51 H 0.065 0.935 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.980 -0.747 -19.799 22.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.112 3.888 3 H 0.060 0.940 4 C -0.536 4.536 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.269 5.269 13 C -0.110 4.110 14 C 0.071 3.929 15 N -0.311 5.311 16 C 0.407 3.593 17 O -0.420 6.420 18 N -0.388 5.388 19 C 0.038 3.962 20 C 0.329 3.671 21 O -0.323 6.323 22 C -0.098 4.098 23 H 0.102 0.898 24 C -0.214 4.214 25 C -0.163 4.163 26 C -0.153 4.153 27 C -0.162 4.162 28 C -0.100 4.100 29 H 0.105 0.895 30 C -0.212 4.212 31 H 0.025 0.975 32 H 0.053 0.947 33 H 0.109 0.891 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.041 0.959 38 H 0.116 0.884 39 H 0.084 0.916 40 H 0.277 0.723 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.088 0.912 46 H 0.085 0.915 47 H 0.078 0.922 48 H 0.102 0.898 49 H 0.087 0.913 50 H 0.074 0.926 51 H 0.084 0.916 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.016 -0.491 -19.140 21.608 hybrid contribution -0.599 -0.789 0.462 1.093 sum 9.417 -1.280 -18.678 20.957 Atomic orbital electron populations 1.22457 1.00367 0.99762 1.00650 1.19322 0.89907 0.94458 0.85128 0.94009 1.20992 1.30714 1.12515 0.89416 0.92029 1.24902 0.95192 0.95116 0.98942 1.69864 1.36904 1.22977 1.23580 0.86562 0.79224 0.79576 0.82045 1.20249 1.21375 1.20378 1.61987 1.59655 1.03151 1.02066 1.22269 0.96608 0.90899 1.01254 1.22044 0.88632 0.98230 0.84039 1.46758 1.20383 1.33439 1.30497 1.15959 0.83589 0.80352 0.79448 1.90987 1.29247 1.47719 1.74018 1.45539 1.18328 1.38945 1.35988 1.21197 0.91000 0.89396 0.94648 1.20339 0.80664 0.82172 0.83880 1.90743 1.65812 1.26393 1.49318 1.21192 0.92373 0.96781 0.99492 0.89770 1.21924 1.02157 0.99326 0.97962 1.21765 0.98487 0.96373 0.99652 1.21495 0.97127 0.98588 0.98056 1.21759 0.94755 0.97245 1.02417 1.21200 0.97075 0.95650 0.96074 0.89536 1.21916 0.96451 1.00822 1.02021 0.97543 0.94661 0.89052 0.92899 0.93571 0.90871 0.95885 0.88379 0.91607 0.72315 0.92361 0.91799 0.91457 0.89564 0.91235 0.91492 0.92222 0.89751 0.91329 0.92610 0.91598 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.15 8.26 37.16 0.31 -3.85 16 2 C 0.22 5.45 2.27 -68.86 -0.16 5.29 16 3 H 0.04 1.15 7.80 -51.93 -0.40 0.75 16 4 C -0.50 -13.60 7.91 -34.44 -0.27 -13.88 16 5 H 0.06 1.70 7.12 -52.49 -0.37 1.33 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -25.30 11.32 55.43 0.63 -24.67 16 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.54 -11.90 4.80 -240.19 -1.15 -13.05 16 13 C 0.04 0.80 8.38 60.06 0.50 1.30 16 14 C 0.28 5.38 4.76 -63.30 -0.30 5.08 16 15 N -0.56 -9.36 2.82 -124.10 -0.35 -9.71 16 16 C 0.71 10.95 7.74 -87.83 -0.68 10.27 16 17 O -0.55 -10.08 16.07 5.33 0.09 -10.00 16 18 N -0.72 -8.04 4.37 -53.88 -0.24 -8.27 16 19 C 0.13 1.43 0.51 -133.11 -0.07 1.36 16 20 C 0.54 8.32 3.72 -10.71 -0.04 8.28 16 21 O -0.45 -8.03 13.85 5.59 0.08 -7.95 16 22 C -0.08 -0.80 2.28 -90.85 -0.21 -1.00 16 23 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 24 C -0.16 -1.92 8.65 37.16 0.32 -1.60 16 25 C -0.12 -1.27 4.96 -26.68 -0.13 -1.40 16 26 C -0.12 -0.96 5.91 -26.72 -0.16 -1.12 16 27 C -0.12 -1.13 4.96 -26.68 -0.13 -1.26 16 28 C -0.08 -0.72 2.28 -90.85 -0.21 -0.92 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 30 C -0.15 -1.46 8.65 37.16 0.32 -1.14 16 31 H 0.01 0.12 7.31 -51.93 -0.38 -0.26 16 32 H 0.03 0.83 6.41 -51.93 -0.33 0.49 16 33 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.05 0.93 6.11 -51.93 -0.32 0.61 16 36 H 0.07 1.61 6.76 -51.93 -0.35 1.26 16 37 H 0.02 0.48 6.38 -51.93 -0.33 0.15 16 38 H 0.10 1.89 7.51 -51.93 -0.39 1.50 16 39 H 0.07 1.25 7.29 -51.93 -0.38 0.88 16 40 H 0.43 3.58 8.96 -40.82 -0.37 3.21 16 41 H 0.06 0.73 7.61 -51.93 -0.40 0.34 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 1.07 7.14 -51.93 -0.37 0.70 16 44 H 0.09 1.14 6.11 -51.93 -0.32 0.82 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.08 0.99 6.11 -51.92 -0.32 0.67 16 49 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.05 0.64 7.14 -51.93 -0.37 0.27 16 51 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 52 H 0.06 0.59 7.61 -51.93 -0.40 0.19 16 LS Contribution 383.52 15.07 5.78 5.78 Total: -1.00 -30.56 383.52 -9.81 -40.37 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -8.62 Total: 4.11 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -1.00 Total: 6.97 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -1.11 Total: -55.71 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: 0.16 Total: -17.95 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.56 -9.81 -40.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246110823.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.821 kcal (2) G-P(sol) polarization free energy of solvation -30.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds