Wall clock time and date at job start Tue Mar 31 2020 20:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 N 1.46904 * 109.46661 * 119.99547 * 2 1 3 13 13 C 1.46901 * 110.99842 * 58.95483 * 12 2 1 14 14 C 1.46900 * 111.00252 * 294.99895 * 12 2 1 15 15 N 1.46493 * 109.47309 * 205.00295 * 14 12 2 16 16 C 1.33865 * 124.19594 * 269.70073 * 15 14 12 17 17 O 1.21540 * 123.78645 * 359.97438 * 16 15 14 18 18 N 1.34676 * 112.42552 * 179.83969 * 16 15 14 19 19 C 1.46833 * 106.42745 * 0.40327 * 18 16 15 20 20 C 1.34913 * 124.19943 * 89.99645 * 15 14 12 21 21 O 1.21230 * 127.25368 * 359.94721 * 20 15 14 22 22 C 1.52473 * 110.54396 * 118.27134 * 19 18 16 23 23 H 1.08998 * 109.45786 * 184.32747 * 22 19 18 24 24 C 1.53003 * 109.44906 * 304.25912 * 22 19 18 25 25 C 1.53078 * 109.58019 * 64.29216 * 22 19 18 26 26 C 1.53010 * 109.42059 * 59.15191 * 25 22 19 27 27 C 1.53001 * 109.50459 * 299.52442 * 26 25 22 28 28 C 1.52475 * 110.54600 * 241.26008 * 19 18 16 29 29 H 1.08996 * 109.45051 * 55.71161 * 28 19 18 30 30 C 1.52994 * 109.45120 * 175.67058 * 28 19 18 31 31 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 32 32 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 33 33 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 34 34 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 35 35 H 1.09002 * 109.47314 * 59.99810 * 13 12 2 36 36 H 1.09008 * 109.46990 * 179.97438 * 13 12 2 37 37 H 1.08994 * 109.47200 * 299.99430 * 13 12 2 38 38 H 1.09002 * 109.46744 * 325.00393 * 14 12 2 39 39 H 1.08997 * 109.47082 * 84.99994 * 14 12 2 40 40 H 0.96996 * 126.78725 * 180.13598 * 18 16 15 41 41 H 1.09001 * 109.47001 * 60.00069 * 24 22 19 42 42 H 1.09007 * 109.46883 * 179.97438 * 24 22 19 43 43 H 1.08993 * 109.47420 * 299.99604 * 24 22 19 44 44 H 1.09005 * 109.48277 * 299.16698 * 25 22 19 45 45 H 1.09001 * 109.49071 * 179.14597 * 25 22 19 46 46 H 1.08996 * 109.46445 * 179.50928 * 26 25 22 47 47 H 1.09002 * 109.45585 * 59.53325 * 26 25 22 48 48 H 1.08997 * 109.48126 * 300.47920 * 27 26 25 49 49 H 1.09000 * 109.47640 * 180.45371 * 27 26 25 50 50 H 1.08997 * 109.47692 * 59.99999 * 30 28 19 51 51 H 1.09005 * 109.47064 * 179.97438 * 30 28 19 52 52 H 1.09005 * 109.47100 * 299.99355 * 30 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.8387 -2.5128 -4.0135 10 1 1.8422 -0.4097 -5.2203 11 1 3.8181 -1.1118 -4.0019 12 7 2.0196 -0.6924 1.1996 13 6 1.5282 -2.0760 1.2461 14 6 1.6486 0.0393 2.4181 15 7 2.5923 -0.2870 3.4901 16 6 2.4291 -1.2956 4.3549 17 8 1.4760 -2.0497 4.3417 18 7 3.4409 -1.3827 5.2395 19 6 4.3704 -0.2932 4.9158 20 6 3.7309 0.3952 3.7317 21 8 4.1525 1.3572 3.1263 22 6 4.4923 0.6726 6.0894 23 1 5.1246 1.5132 5.8037 24 6 3.1032 1.1874 6.4720 25 6 5.1155 -0.0505 7.2861 26 6 6.4962 -0.5826 6.8964 27 6 6.3545 -1.5681 5.7346 28 6 5.7363 -0.8514 4.5315 29 1 5.6215 -1.5570 3.7087 30 6 6.6511 0.2950 4.0961 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0276 -0.0005 34 1 0.7173 1.1669 -3.4844 35 1 1.8761 -2.6151 0.3649 36 1 1.9059 -2.5657 2.1438 37 1 0.4384 -2.0741 1.2641 38 1 1.6784 1.1110 2.2216 39 1 0.6415 -0.2467 2.7212 40 1 3.5348 -2.0339 5.9523 41 1 2.4701 0.3471 6.7569 42 1 3.1900 1.8775 7.3113 43 1 2.6600 1.7040 5.6207 44 1 4.4757 -0.8819 7.5820 45 1 5.2160 0.6452 8.1193 46 1 6.9442 -1.0901 7.7506 47 1 7.1330 0.2481 6.5924 48 1 5.7108 -2.3947 6.0356 49 1 7.3373 -1.9531 5.4627 50 1 6.7653 1.0012 4.9184 51 1 7.6278 -0.1038 3.8217 52 1 6.2121 0.8042 3.2381 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246110826.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:22 Heat of formation + Delta-G solvation = -61.934630 kcal Electronic energy + Delta-G solvation = -32449.881679 eV Core-core repulsion = 28449.263874 eV Total energy + Delta-G solvation = -4000.617805 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.95118 -40.31102 -39.51025 -38.72024 -36.87318 -35.26195 -34.36448 -34.03134 -31.88367 -30.65089 -28.68122 -27.70886 -27.41396 -27.25076 -25.69432 -24.39666 -23.45028 -22.40261 -21.70512 -20.92189 -19.99913 -18.99512 -18.29428 -18.07090 -17.46596 -17.00527 -16.70159 -16.55395 -16.25876 -16.10818 -15.65731 -15.45375 -15.36136 -15.27714 -14.83506 -14.43428 -14.26693 -14.16924 -13.77283 -13.49667 -13.40715 -13.16896 -13.10883 -12.97507 -12.79527 -12.72042 -12.66124 -12.55099 -12.49179 -12.44824 -12.09406 -12.03782 -11.92982 -11.86937 -11.61849 -11.43286 -11.16633 -11.11594 -10.86852 -10.69815 -10.52774 -10.33684 -9.14994 -8.14016 -6.25353 0.61265 1.17341 1.41659 1.43338 1.50957 1.94828 2.15539 2.41280 2.87582 3.15182 3.28744 3.35308 3.49688 3.79913 3.93022 4.01172 4.07216 4.16124 4.21152 4.33336 4.40144 4.44205 4.47847 4.55655 4.59874 4.61218 4.70057 4.70905 4.72693 4.82226 4.85568 4.93501 4.99309 5.02842 5.07216 5.12046 5.14641 5.23183 5.25468 5.31086 5.37761 5.40520 5.42068 5.63138 5.63837 5.69439 5.81233 5.99760 6.11196 6.33005 6.42657 6.53032 6.84034 7.11365 7.43222 8.92288 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017903 B = 0.003435 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.566943 B = 8150.561853 C = 8628.188971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.224 3.776 3 H 0.010 0.990 4 C -0.519 4.519 5 H 0.055 0.945 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.961 3.039 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.275 1.275 12 N -0.554 5.554 13 C 0.050 3.950 14 C 0.288 3.712 15 N -0.572 5.572 16 C 0.702 3.298 17 O -0.575 6.575 18 N -0.694 5.694 19 C 0.144 3.856 20 C 0.527 3.473 21 O -0.487 6.487 22 C -0.081 4.081 23 H 0.095 0.905 24 C -0.153 4.153 25 C -0.105 4.105 26 C -0.122 4.122 27 C -0.106 4.106 28 C -0.083 4.083 29 H 0.059 0.941 30 C -0.156 4.156 31 H 0.026 0.974 32 H 0.067 0.933 33 H 0.035 0.965 34 H 0.263 0.737 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.022 0.978 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.449 0.551 41 H 0.059 0.941 42 H 0.087 0.913 43 H 0.026 0.974 44 H 0.073 0.927 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.072 0.928 48 H 0.072 0.928 49 H 0.082 0.918 50 H 0.080 0.920 51 H 0.075 0.925 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.200 -2.486 24.211 26.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.117 3.883 3 H 0.028 0.972 4 C -0.557 4.557 5 H 0.073 0.927 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.786 3.214 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.200 1.200 12 N -0.280 5.280 13 C -0.098 4.098 14 C 0.077 3.923 15 N -0.318 5.318 16 C 0.403 3.597 17 O -0.452 6.452 18 N -0.359 5.359 19 C 0.053 3.947 20 C 0.316 3.684 21 O -0.358 6.358 22 C -0.101 4.101 23 H 0.113 0.887 24 C -0.210 4.210 25 C -0.143 4.143 26 C -0.159 4.159 27 C -0.143 4.143 28 C -0.102 4.102 29 H 0.078 0.922 30 C -0.213 4.213 31 H 0.045 0.955 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.041 0.959 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.297 0.703 41 H 0.078 0.922 42 H 0.106 0.894 43 H 0.046 0.954 44 H 0.091 0.909 45 H 0.108 0.892 46 H 0.105 0.895 47 H 0.091 0.909 48 H 0.090 0.910 49 H 0.101 0.899 50 H 0.099 0.901 51 H 0.093 0.907 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 11.289 -2.220 23.626 26.278 hybrid contribution -1.095 -0.375 -1.343 1.773 sum 10.195 -2.596 22.283 24.642 Atomic orbital electron populations 1.22242 0.99522 0.99577 1.00465 1.19053 0.90436 0.92828 0.85981 0.97239 1.21253 1.31174 1.12552 0.90729 0.92670 1.25662 0.95272 0.95740 1.01737 1.69988 1.37577 1.23889 1.24270 0.85573 0.78617 0.78701 0.78495 1.19584 1.20724 1.20001 1.61891 1.60748 1.03247 1.02084 1.22146 0.97329 0.89395 1.00939 1.21802 0.89392 0.98297 0.82859 1.46733 1.24440 1.30567 1.30098 1.16045 0.83578 0.80235 0.79819 1.90964 1.33536 1.45655 1.75007 1.45376 1.21278 1.34341 1.34910 1.21192 0.91554 0.88268 0.93639 1.21310 0.79856 0.82492 0.84776 1.90741 1.65586 1.25647 1.53793 1.21339 0.98449 0.96871 0.93424 0.88653 1.21910 0.95871 1.01643 1.01617 1.21603 0.96460 1.00520 0.95678 1.21644 0.96888 0.99304 0.98060 1.21575 1.01551 0.97980 0.93227 1.21208 0.90848 0.98310 0.99871 0.92209 1.22023 0.99387 0.97812 1.02084 0.95457 0.91389 0.94632 0.92775 0.92148 0.92533 0.95924 0.89262 0.91266 0.70307 0.92214 0.89407 0.95446 0.90856 0.89170 0.89503 0.90897 0.90959 0.89893 0.90088 0.90654 0.94082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.85 8.34 71.98 0.60 -7.25 16 2 C 0.22 11.76 2.27 44.17 0.10 11.86 16 3 H 0.01 0.57 7.93 -2.39 -0.02 0.55 16 4 C -0.52 -29.29 7.93 25.60 0.20 -29.09 16 5 H 0.06 3.13 6.75 -2.91 -0.02 3.11 16 6 C 0.01 0.84 5.31 84.65 0.45 1.28 16 7 N -0.92 -53.28 11.33 21.45 0.24 -53.04 16 8 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 11 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 12 N -0.55 -25.49 4.84 -913.82 -4.42 -29.91 16 13 C 0.05 2.16 8.64 127.69 1.10 3.27 16 14 C 0.29 11.55 4.56 170.81 0.78 12.33 16 15 N -0.57 -19.70 2.82 -783.66 -2.21 -21.91 16 16 C 0.70 21.75 7.79 179.37 1.40 23.15 16 17 O -0.58 -21.14 16.01 -3.84 -0.06 -21.20 16 18 N -0.69 -14.43 4.38 -442.69 -1.94 -16.37 16 19 C 0.14 3.04 0.32 2.59 0.00 3.04 16 20 C 0.53 16.84 5.42 87.78 0.48 17.31 16 21 O -0.49 -18.53 15.64 -2.88 -0.04 -18.58 16 22 C -0.08 -1.25 1.85 -10.94 -0.02 -1.27 16 23 H 0.10 1.54 6.64 -2.39 -0.02 1.53 16 24 C -0.15 -2.60 8.63 71.98 0.62 -1.98 16 25 C -0.11 -0.88 5.10 30.62 0.16 -0.73 16 26 C -0.12 -0.90 5.65 30.60 0.17 -0.73 16 27 C -0.11 -1.13 5.33 30.62 0.16 -0.97 16 28 C -0.08 -1.54 2.43 -10.94 -0.03 -1.57 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 C -0.16 -3.03 8.24 71.98 0.59 -2.43 16 31 H 0.03 1.19 7.13 -2.39 -0.02 1.17 16 32 H 0.07 3.70 6.08 -2.38 -0.01 3.69 16 33 H 0.03 1.71 6.39 -2.39 -0.02 1.69 16 34 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 35 H 0.06 2.74 6.53 -2.39 -0.02 2.72 16 36 H 0.06 2.32 5.87 -2.38 -0.01 2.31 16 37 H 0.02 0.97 6.27 -2.39 -0.01 0.96 16 38 H 0.09 3.69 7.59 -2.39 -0.02 3.67 16 39 H 0.07 2.72 7.28 -2.39 -0.02 2.71 16 40 H 0.45 6.51 7.75 -92.71 -0.72 5.79 16 41 H 0.06 1.02 7.54 -2.39 -0.02 1.01 16 42 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 43 H 0.03 0.61 7.22 -2.39 -0.02 0.59 16 44 H 0.07 0.52 7.35 -2.38 -0.02 0.51 16 45 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 47 H 0.07 0.56 6.42 -2.39 -0.02 0.55 16 48 H 0.07 0.67 7.36 -2.39 -0.02 0.65 16 49 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.08 1.25 4.95 -2.39 -0.01 1.24 16 51 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 52 H 0.04 1.12 5.92 -2.38 -0.01 1.11 16 Total: -1.00 -69.52 379.81 0.58 -68.95 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.22 Total: 19.30 kcal Atomic # 6 Polarization: 19.46 SS G_CDS: 6.77 Total: 26.23 kcal Atomic # 7 Polarization: -112.90 SS G_CDS: -8.33 Total: -121.24 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -0.11 Total: -39.78 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -69.52 0.58 -68.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246110826.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.011 kcal (2) G-P(sol) polarization free energy of solvation -69.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds