Wall clock time and date at job start Tue Mar 31 2020 21:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.49729 * 2 1 4 4 C 1.53038 * 109.49845 * 239.93618 * 2 1 3 5 5 C 1.53038 * 109.54074 * 178.68447 * 4 2 1 6 6 C 1.53200 * 109.33694 * 61.34746 * 5 4 2 7 7 N 1.46933 * 108.77036 * 305.41551 * 6 5 4 8 8 C 1.34773 * 120.60104 * 233.53187 * 7 6 5 9 9 O 1.21350 * 119.99457 * 171.92696 * 8 7 6 10 10 C 1.49448 * 120.00267 * 351.92875 * 8 7 6 11 11 O 1.21342 * 120.00232 * 353.48317 * 10 8 7 12 12 N 1.34781 * 119.99819 * 173.48892 * 10 8 7 13 13 C 1.46502 * 119.99530 * 180.02562 * 12 10 8 14 14 C 1.53005 * 109.46421 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.50132 * 304.99243 * 14 13 12 16 16 C 1.53050 * 109.49460 * 184.93212 * 14 13 12 17 17 C 1.53030 * 109.54042 * 178.71235 * 16 14 13 18 18 C 1.53198 * 109.33630 * 61.31666 * 17 16 14 19 19 N 1.46917 * 108.77534 * 305.38092 * 18 17 16 20 20 C 1.36944 * 120.62752 * 233.62821 * 19 18 17 21 21 H 1.07999 * 119.99844 * 144.33923 * 20 19 18 22 22 C 1.38804 * 120.00209 * 324.33742 * 20 19 18 23 23 N 1.31622 * 120.00114 * 346.34081 * 22 20 19 24 24 Si 1.86796 * 120.00211 * 166.34287 * 22 20 19 25 25 H 1.48508 * 109.47203 * 59.99913 * 24 22 20 26 26 H 1.48496 * 109.47435 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47216 * 300.00182 * 24 22 20 28 28 C 1.46918 * 118.74204 * 53.60892 * 19 18 17 29 29 C 1.46925 * 118.76470 * 53.56289 * 7 6 5 30 30 H 1.08996 * 109.47337 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47315 * 300.06476 * 1 2 3 32 32 H 1.09004 * 109.46898 * 60.06616 * 1 2 3 33 33 H 1.09001 * 109.45730 * 58.66023 * 4 2 1 34 34 H 1.09005 * 109.45983 * 298.70922 * 4 2 1 35 35 H 1.08995 * 109.50128 * 181.31565 * 5 4 2 36 36 H 1.09000 * 109.49362 * 301.38495 * 5 4 2 37 37 H 1.08994 * 109.58225 * 65.17051 * 6 5 4 38 38 H 1.09000 * 109.57955 * 185.59545 * 6 5 4 39 39 H 0.96993 * 120.00385 * 359.97438 * 12 10 8 40 40 H 1.09004 * 109.47058 * 299.99151 * 13 12 10 41 41 H 1.08993 * 109.47568 * 59.99843 * 13 12 10 42 42 H 1.09001 * 109.45745 * 298.70465 * 16 14 13 43 43 H 1.09006 * 109.45930 * 58.65966 * 16 14 13 44 44 H 1.08995 * 109.47621 * 301.36749 * 17 16 14 45 45 H 1.09003 * 109.49820 * 181.28394 * 17 16 14 46 46 H 1.09000 * 109.58511 * 185.59112 * 18 17 16 47 47 H 1.09003 * 109.70401 * 65.24077 * 18 17 16 48 48 H 0.97003 * 119.99846 * 179.97438 * 23 22 20 49 49 H 1.09000 * 109.58944 * 186.60094 * 28 19 18 50 50 H 1.09008 * 109.58676 * 66.17489 * 28 19 18 51 51 H 1.08999 * 109.58516 * 186.62686 * 29 7 6 52 52 H 1.08995 * 109.59415 * 66.19301 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7227 -1.2485 5 6 3.5709 -0.6947 -1.2662 6 6 4.1059 -1.4263 -0.0311 7 7 3.5046 -0.8295 1.1694 8 6 4.2811 -0.3875 2.1784 9 8 3.7874 0.2339 3.0964 10 6 5.7500 -0.6626 2.1666 11 8 6.2256 -1.3826 1.3135 12 7 6.5464 -0.1111 3.1037 13 6 7.9864 -0.3804 3.0918 14 6 8.6533 0.3611 4.2521 15 1 8.4094 1.4219 4.1943 16 6 10.1709 0.1808 4.1686 17 6 10.8412 0.9485 5.3101 18 6 10.3598 0.3858 6.6513 19 7 8.8913 0.4227 6.6798 20 6 8.2287 1.0339 7.7107 21 1 7.3089 1.5671 7.5206 22 6 8.7391 0.9681 8.9998 23 7 9.6953 0.1101 9.2860 24 14 8.0691 2.0973 10.3284 25 1 6.6160 1.8465 10.5047 26 1 8.7755 1.8309 11.6071 27 1 8.2825 3.5118 9.9299 28 6 8.1473 -0.2082 5.5812 29 6 2.0413 -0.7243 1.2494 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 1.6581 -0.2238 -2.1389 34 1 1.6967 -1.7569 -1.2358 35 1 3.9335 -1.1891 -2.1674 36 1 3.9159 0.3392 -1.2545 37 1 3.8386 -2.4814 -0.0872 38 1 5.1902 -1.3236 0.0131 39 1 6.1663 0.4647 3.7854 40 1 8.1566 -1.4517 3.1990 41 1 8.4124 -0.0374 2.1490 42 1 10.4157 -0.8782 4.2508 43 1 10.5300 0.5632 3.2131 44 1 10.5771 2.0038 5.2426 45 1 11.9231 0.8383 5.2367 46 1 10.7565 0.9923 7.4655 47 1 10.7017 -0.6433 6.7621 48 1 10.0522 0.0644 10.1869 49 1 7.0841 0.0063 5.6894 50 1 8.3087 -1.2860 5.6021 51 1 1.7637 -0.1586 2.1388 52 1 1.6052 -1.7220 1.2975 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338798005.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:42 Heat of formation + Delta-G solvation = -57.046795 kcal Electronic energy + Delta-G solvation = -30044.892160 eV Core-core repulsion = 26044.486307 eV Total energy + Delta-G solvation = -4000.405853 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.77 seconds Orbital eigenvalues (eV) -41.06590 -39.17904 -37.89689 -37.77542 -35.18137 -33.89781 -32.97717 -32.16254 -30.53627 -30.41152 -27.65002 -26.60134 -25.55961 -25.22910 -23.08916 -22.60122 -22.07240 -20.97762 -20.64139 -19.88108 -19.04494 -17.67236 -17.10643 -16.63193 -16.19032 -15.81862 -15.54815 -15.03931 -14.83517 -14.77343 -14.60541 -14.16918 -13.98615 -13.82819 -13.58749 -13.45257 -13.30593 -12.95914 -12.80510 -12.51782 -12.38524 -12.26887 -12.21825 -12.08450 -11.64282 -11.41746 -11.29876 -11.19381 -10.99916 -10.88882 -10.74195 -10.72535 -10.54760 -10.25681 -10.20688 -9.96221 -9.66318 -9.44267 -9.30021 -9.08811 -8.93768 -8.47288 -6.56644 -5.79726 -3.30740 1.35138 2.23512 3.11582 3.38694 3.41170 3.43744 3.45305 4.23584 4.39294 4.43928 4.48061 4.52496 4.72011 4.97500 5.01710 5.08133 5.17715 5.24365 5.25789 5.35587 5.38087 5.39303 5.43714 5.46913 5.59269 5.60990 5.66530 5.74697 5.76009 5.77108 5.80411 5.88273 5.94480 6.02832 6.12247 6.18858 6.29324 6.33107 6.42684 6.58670 6.66870 6.75715 6.82414 6.89588 6.95408 7.22863 7.34946 7.61348 7.67010 7.81011 7.94809 8.49412 9.21930 9.82292 10.43760 11.28364 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016200 B = 0.002421 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.968296 B =11563.096255 C =12969.546345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 H 0.075 0.925 4 C -0.117 4.117 5 C -0.136 4.136 6 C 0.067 3.933 7 N -0.584 5.584 8 C 0.507 3.493 9 O -0.517 6.517 10 C 0.507 3.493 11 O -0.521 6.521 12 N -0.686 5.686 13 C 0.124 3.876 14 C -0.120 4.120 15 H 0.075 0.925 16 C -0.098 4.098 17 C -0.142 4.142 18 C 0.173 3.827 19 N -0.589 5.589 20 C -0.261 4.261 21 H 0.061 0.939 22 C 0.011 3.989 23 N -0.899 5.899 24 Si 0.902 3.098 25 H -0.281 1.281 26 H -0.290 1.290 27 H -0.283 1.283 28 C 0.152 3.848 29 C 0.111 3.889 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.144 0.856 39 H 0.416 0.584 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.048 0.952 44 H 0.054 0.946 45 H 0.050 0.950 46 H 0.074 0.926 47 H 0.020 0.980 48 H 0.255 0.745 49 H 0.052 0.948 50 H 0.019 0.981 51 H 0.095 0.905 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.666 -1.992 -22.025 25.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 H 0.093 0.907 4 C -0.154 4.154 5 C -0.174 4.174 6 C -0.054 4.054 7 N -0.318 5.318 8 C 0.290 3.710 9 O -0.393 6.393 10 C 0.288 3.712 11 O -0.400 6.400 12 N -0.337 5.337 13 C 0.000 4.000 14 C -0.140 4.140 15 H 0.093 0.907 16 C -0.136 4.136 17 C -0.181 4.181 18 C 0.047 3.953 19 N -0.311 5.311 20 C -0.391 4.391 21 H 0.079 0.921 22 C -0.189 4.189 23 N -0.542 5.542 24 Si 0.732 3.268 25 H -0.207 1.207 26 H -0.216 1.216 27 H -0.209 1.209 28 C 0.025 3.975 29 C -0.011 4.011 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.160 0.840 39 H 0.254 0.746 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.093 0.907 47 H 0.038 0.962 48 H 0.065 0.935 49 H 0.070 0.930 50 H 0.037 0.963 51 H 0.113 0.887 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.484 -2.204 -21.903 24.829 hybrid contribution -0.580 0.727 1.003 1.367 sum -12.064 -1.477 -20.900 24.177 Atomic orbital electron populations 1.21767 0.94213 1.02120 1.02199 1.21502 0.96056 1.00215 0.94805 0.90656 1.21628 0.95608 1.00775 0.97417 1.21956 0.95739 1.01480 0.98225 1.22920 1.03674 0.96531 0.82314 1.47924 1.06598 1.59355 1.17938 1.20192 0.87867 0.80054 0.82915 1.90785 1.74923 1.38252 1.35292 1.20043 0.87383 0.81307 0.82488 1.90451 1.75719 1.37669 1.36140 1.45965 1.08910 1.48558 1.30306 1.21670 0.77631 1.01155 0.99497 1.21996 0.96158 1.00323 0.95550 0.90658 1.21328 0.93652 1.00546 0.98112 1.22170 0.98183 0.99775 0.97981 1.20696 0.83727 0.97940 0.92890 1.43919 1.00855 1.64051 1.22284 1.19055 1.07902 1.26291 0.85816 0.92096 1.25248 0.98973 0.97509 0.97184 1.70009 1.29589 1.34847 1.19739 0.86390 0.78630 0.80749 0.81070 1.20713 1.21621 1.20891 1.20940 0.95332 0.94599 0.86608 1.21811 0.78657 1.01156 0.99449 0.92421 0.92238 0.92251 0.91698 0.91700 0.90492 0.91668 0.91460 0.83954 0.74637 0.90820 0.91242 0.92366 0.93357 0.92696 0.93132 0.90713 0.96197 0.93541 0.92955 0.96296 0.88687 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.20 37.16 0.34 -0.52 16 2 C -0.11 -0.79 2.87 -90.50 -0.26 -1.05 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.12 -0.77 5.17 -26.69 -0.14 -0.90 16 5 C -0.14 -1.01 6.08 -26.61 -0.16 -1.17 16 6 C 0.07 0.64 6.00 -3.70 -0.02 0.61 16 7 N -0.58 -6.53 2.97 -173.27 -0.52 -7.05 16 8 C 0.51 6.97 7.74 -11.59 -0.09 6.88 16 9 O -0.52 -8.31 15.92 5.50 0.09 -8.22 16 10 C 0.51 7.06 7.75 -11.58 -0.09 6.97 16 11 O -0.52 -7.56 13.16 5.50 0.07 -7.49 16 12 N -0.69 -9.53 5.32 -60.73 -0.32 -9.86 16 13 C 0.12 1.70 5.07 -4.04 -0.02 1.68 16 14 C -0.12 -1.92 2.37 -90.49 -0.21 -2.14 16 15 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 16 C -0.10 -1.55 5.17 -26.69 -0.14 -1.69 16 17 C -0.14 -2.60 6.08 -26.61 -0.16 -2.76 16 18 C 0.17 4.05 5.25 -3.71 -0.02 4.03 16 19 N -0.59 -14.52 2.95 -172.33 -0.51 -15.03 16 20 C -0.26 -7.13 9.51 -15.06 -0.14 -7.27 16 21 H 0.06 1.64 7.87 -52.49 -0.41 1.23 16 22 C 0.01 0.30 4.95 -17.43 -0.09 0.21 16 23 N -0.90 -26.11 11.58 55.49 0.64 -25.47 16 24 Si 0.90 21.72 29.57 -169.99 -5.03 16.69 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 C 0.15 3.09 5.60 -3.72 -0.02 3.07 16 29 C 0.11 1.04 5.73 -3.71 -0.02 1.02 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.14 1.60 4.27 -55.01 -0.24 1.36 16 39 H 0.42 5.92 7.19 -40.82 -0.29 5.63 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.07 1.95 6.55 -51.93 -0.34 1.61 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 49 H 0.05 1.06 7.14 -51.93 -0.37 0.69 16 50 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 51 H 0.09 1.01 7.00 -51.93 -0.36 0.65 16 52 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 400.35 15.07 6.03 6.03 Total: -1.00 -30.66 400.35 -9.97 -40.63 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -9.18 Total: 2.79 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -1.25 Total: 6.98 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.70 Total: -57.41 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.16 Total: -15.71 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.66 -9.97 -40.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338798005.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.421 kcal (2) G-P(sol) polarization free energy of solvation -30.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.77 seconds