Wall clock time and date at job start Tue Mar 31 2020 21:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.49729 * 2 1 4 4 C 1.53038 * 109.49845 * 239.93618 * 2 1 3 5 5 C 1.53038 * 109.54074 * 178.68447 * 4 2 1 6 6 C 1.53200 * 109.33694 * 61.34746 * 5 4 2 7 7 N 1.46933 * 108.77036 * 305.41551 * 6 5 4 8 8 C 1.34773 * 120.60104 * 233.53187 * 7 6 5 9 9 O 1.21350 * 119.99457 * 171.92696 * 8 7 6 10 10 C 1.49448 * 120.00267 * 351.92875 * 8 7 6 11 11 O 1.21342 * 120.00232 * 353.48317 * 10 8 7 12 12 N 1.34781 * 119.99819 * 173.48892 * 10 8 7 13 13 C 1.46502 * 119.99530 * 180.02562 * 12 10 8 14 14 C 1.53005 * 109.46421 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.50132 * 304.99243 * 14 13 12 16 16 C 1.53050 * 109.49460 * 184.93212 * 14 13 12 17 17 C 1.53030 * 109.54042 * 178.71235 * 16 14 13 18 18 C 1.53198 * 109.33630 * 61.31666 * 17 16 14 19 19 N 1.46917 * 108.77534 * 305.38092 * 18 17 16 20 20 C 1.36944 * 120.62752 * 233.62821 * 19 18 17 21 21 H 1.07999 * 119.99844 * 144.33923 * 20 19 18 22 22 C 1.38804 * 120.00209 * 324.33742 * 20 19 18 23 23 N 1.31622 * 120.00114 * 346.34081 * 22 20 19 24 24 Si 1.86796 * 120.00211 * 166.34287 * 22 20 19 25 25 H 1.48508 * 109.47203 * 59.99913 * 24 22 20 26 26 H 1.48496 * 109.47435 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47216 * 300.00182 * 24 22 20 28 28 C 1.46918 * 118.74204 * 53.60892 * 19 18 17 29 29 C 1.46925 * 118.76470 * 53.56289 * 7 6 5 30 30 H 1.08996 * 109.47337 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47315 * 300.06476 * 1 2 3 32 32 H 1.09004 * 109.46898 * 60.06616 * 1 2 3 33 33 H 1.09001 * 109.45730 * 58.66023 * 4 2 1 34 34 H 1.09005 * 109.45983 * 298.70922 * 4 2 1 35 35 H 1.08995 * 109.50128 * 181.31565 * 5 4 2 36 36 H 1.09000 * 109.49362 * 301.38495 * 5 4 2 37 37 H 1.08994 * 109.58225 * 65.17051 * 6 5 4 38 38 H 1.09000 * 109.57955 * 185.59545 * 6 5 4 39 39 H 0.96993 * 120.00385 * 359.97438 * 12 10 8 40 40 H 1.09004 * 109.47058 * 299.99151 * 13 12 10 41 41 H 1.08993 * 109.47568 * 59.99843 * 13 12 10 42 42 H 1.09001 * 109.45745 * 298.70465 * 16 14 13 43 43 H 1.09006 * 109.45930 * 58.65966 * 16 14 13 44 44 H 1.08995 * 109.47621 * 301.36749 * 17 16 14 45 45 H 1.09003 * 109.49820 * 181.28394 * 17 16 14 46 46 H 1.09000 * 109.58511 * 185.59112 * 18 17 16 47 47 H 1.09003 * 109.70401 * 65.24077 * 18 17 16 48 48 H 0.97003 * 119.99846 * 179.97438 * 23 22 20 49 49 H 1.09000 * 109.58944 * 186.60094 * 28 19 18 50 50 H 1.09008 * 109.58676 * 66.17489 * 28 19 18 51 51 H 1.08999 * 109.58516 * 186.62686 * 29 7 6 52 52 H 1.08995 * 109.59415 * 66.19301 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7227 -1.2485 5 6 3.5709 -0.6947 -1.2662 6 6 4.1059 -1.4263 -0.0311 7 7 3.5046 -0.8295 1.1694 8 6 4.2811 -0.3875 2.1784 9 8 3.7874 0.2339 3.0964 10 6 5.7500 -0.6626 2.1666 11 8 6.2256 -1.3826 1.3135 12 7 6.5464 -0.1111 3.1037 13 6 7.9864 -0.3804 3.0918 14 6 8.6533 0.3611 4.2521 15 1 8.4094 1.4219 4.1943 16 6 10.1709 0.1808 4.1686 17 6 10.8412 0.9485 5.3101 18 6 10.3598 0.3858 6.6513 19 7 8.8913 0.4227 6.6798 20 6 8.2287 1.0339 7.7107 21 1 7.3089 1.5671 7.5206 22 6 8.7391 0.9681 8.9998 23 7 9.6953 0.1101 9.2860 24 14 8.0691 2.0973 10.3284 25 1 6.6160 1.8465 10.5047 26 1 8.7755 1.8309 11.6071 27 1 8.2825 3.5118 9.9299 28 6 8.1473 -0.2082 5.5812 29 6 2.0413 -0.7243 1.2494 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 1.6581 -0.2238 -2.1389 34 1 1.6967 -1.7569 -1.2358 35 1 3.9335 -1.1891 -2.1674 36 1 3.9159 0.3392 -1.2545 37 1 3.8386 -2.4814 -0.0872 38 1 5.1902 -1.3236 0.0131 39 1 6.1663 0.4647 3.7854 40 1 8.1566 -1.4517 3.1990 41 1 8.4124 -0.0374 2.1490 42 1 10.4157 -0.8782 4.2508 43 1 10.5300 0.5632 3.2131 44 1 10.5771 2.0038 5.2426 45 1 11.9231 0.8383 5.2367 46 1 10.7565 0.9923 7.4655 47 1 10.7017 -0.6433 6.7621 48 1 10.0522 0.0644 10.1869 49 1 7.0841 0.0063 5.6894 50 1 8.3087 -1.2860 5.6021 51 1 1.7637 -0.1586 2.1388 52 1 1.6052 -1.7220 1.2975 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338798005.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:40 Heat of formation + Delta-G solvation = -75.745675 kcal Electronic energy + Delta-G solvation = -30045.703004 eV Core-core repulsion = 26044.486307 eV Total energy + Delta-G solvation = -4001.216697 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.08205 -40.22192 -39.27245 -38.79152 -36.49042 -34.95117 -34.47738 -32.83935 -32.30554 -32.01345 -28.52842 -27.48892 -27.20747 -26.55820 -24.21127 -23.74864 -23.26294 -22.38134 -21.59979 -20.87571 -20.39192 -18.80200 -18.46470 -18.14981 -17.24827 -16.86860 -16.83493 -16.34776 -16.06715 -15.91809 -15.57626 -15.34090 -15.13597 -14.97796 -14.94891 -14.53491 -14.46692 -14.11481 -14.01363 -13.81147 -13.64904 -13.52508 -13.07961 -13.00361 -12.85834 -12.77437 -12.54011 -12.47286 -12.36366 -12.03381 -12.02660 -11.86298 -11.81191 -11.67918 -11.55738 -11.33868 -11.27228 -11.08830 -10.56759 -10.38854 -10.14661 -9.81383 -8.58133 -7.88951 -5.43493 0.26979 1.24774 1.45303 1.46726 1.53748 2.04153 2.43301 2.48839 3.23191 3.26090 3.57961 3.73935 3.83006 3.91784 3.96899 3.99681 4.05955 4.08461 4.30771 4.39905 4.41073 4.54874 4.55976 4.60054 4.64117 4.74486 4.76463 4.80765 4.85911 4.87935 4.89233 4.90757 5.02380 5.05995 5.11990 5.14389 5.18059 5.26262 5.28558 5.33523 5.35641 5.40605 5.45061 5.49811 5.53998 5.65801 5.76674 5.92219 6.17543 6.41549 6.62182 6.86426 7.15722 7.83844 8.39322 9.16002 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016200 B = 0.002421 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.968296 B =11563.096255 C =12969.546345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 H 0.061 0.939 4 C -0.113 4.113 5 C -0.131 4.131 6 C 0.064 3.936 7 N -0.577 5.577 8 C 0.501 3.499 9 O -0.551 6.551 10 C 0.509 3.491 11 O -0.526 6.526 12 N -0.688 5.688 13 C 0.134 3.866 14 C -0.103 4.103 15 H 0.075 0.925 16 C -0.094 4.094 17 C -0.131 4.131 18 C 0.177 3.823 19 N -0.608 5.608 20 C -0.270 4.270 21 H 0.060 0.940 22 C -0.043 4.043 23 N -0.932 5.932 24 Si 0.965 3.035 25 H -0.276 1.276 26 H -0.293 1.293 27 H -0.276 1.276 28 C 0.151 3.849 29 C 0.106 3.894 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.129 0.871 39 H 0.414 0.586 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.059 0.941 43 H 0.087 0.913 44 H 0.052 0.948 45 H 0.072 0.928 46 H 0.038 0.962 47 H -0.004 1.004 48 H 0.251 0.749 49 H 0.046 0.954 50 H 0.008 0.992 51 H 0.077 0.923 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.538 -1.877 -24.863 27.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 H 0.079 0.921 4 C -0.150 4.150 5 C -0.169 4.169 6 C -0.057 4.057 7 N -0.310 5.310 8 C 0.284 3.716 9 O -0.429 6.429 10 C 0.290 3.710 11 O -0.405 6.405 12 N -0.340 5.340 13 C 0.011 3.989 14 C -0.124 4.124 15 H 0.093 0.907 16 C -0.132 4.132 17 C -0.170 4.170 18 C 0.052 3.948 19 N -0.332 5.332 20 C -0.401 4.401 21 H 0.078 0.922 22 C -0.239 4.239 23 N -0.576 5.576 24 Si 0.793 3.207 25 H -0.202 1.202 26 H -0.219 1.219 27 H -0.202 1.202 28 C 0.025 3.975 29 C -0.015 4.015 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.114 0.886 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.146 0.854 39 H 0.251 0.749 40 H 0.090 0.910 41 H 0.110 0.890 42 H 0.078 0.922 43 H 0.105 0.895 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.057 0.943 47 H 0.015 0.985 48 H 0.060 0.940 49 H 0.065 0.935 50 H 0.026 0.974 51 H 0.095 0.905 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.373 -2.103 -24.808 27.802 hybrid contribution -0.348 0.625 1.834 1.969 sum -12.722 -1.478 -22.973 26.302 Atomic orbital electron populations 1.21743 0.92829 1.02845 1.02500 1.21466 0.97129 0.99229 0.94292 0.92055 1.21625 0.94760 1.01390 0.97264 1.21937 0.96463 1.00801 0.97722 1.22987 1.02843 0.97400 0.82427 1.48114 1.07336 1.57921 1.17600 1.20222 0.87950 0.80214 0.83209 1.90767 1.75340 1.40111 1.36679 1.20080 0.87500 0.81134 0.82298 1.90469 1.75939 1.37836 1.36261 1.45988 1.09056 1.48608 1.30306 1.21562 0.77444 1.00684 0.99209 1.21756 0.96789 1.00154 0.93676 0.90711 1.21325 0.92773 1.00457 0.98674 1.22002 0.99703 0.99532 0.95725 1.20553 0.83268 0.96163 0.94833 1.44190 1.01589 1.64539 1.22845 1.19369 1.07856 1.26037 0.86809 0.92229 1.25990 0.99624 0.99047 0.99265 1.70158 1.31069 1.36578 1.19822 0.85390 0.77994 0.79086 0.78240 1.20187 1.21855 1.20154 1.21042 0.94893 0.93920 0.87651 1.21999 0.77562 1.02078 0.99904 0.91464 0.92739 0.91201 0.90261 0.90673 0.88592 0.92569 0.90330 0.85431 0.74936 0.90985 0.89005 0.92204 0.89499 0.92897 0.90894 0.94329 0.98546 0.94035 0.93524 0.97376 0.90450 0.89452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.20 71.98 0.66 -0.73 16 2 C -0.10 -1.35 2.87 -10.71 -0.03 -1.39 16 3 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 4 C -0.11 -1.17 5.17 30.62 0.16 -1.01 16 5 C -0.13 -1.65 6.08 30.67 0.19 -1.46 16 6 C 0.06 1.11 6.00 86.36 0.52 1.63 16 7 N -0.58 -12.46 2.97 -820.46 -2.44 -14.90 16 8 C 0.50 13.77 7.74 87.27 0.68 14.44 16 9 O -0.55 -18.11 15.92 -3.25 -0.05 -18.16 16 10 C 0.51 13.84 7.75 87.27 0.68 14.52 16 11 O -0.53 -14.58 13.16 -3.22 -0.04 -14.63 16 12 N -0.69 -18.62 5.32 -464.41 -2.47 -21.09 16 13 C 0.13 3.43 5.07 86.38 0.44 3.87 16 14 C -0.10 -3.17 2.37 -10.71 -0.03 -3.20 16 15 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 16 C -0.09 -2.73 5.17 30.62 0.16 -2.57 16 17 C -0.13 -4.61 6.08 30.67 0.19 -4.43 16 18 C 0.18 8.49 5.25 86.37 0.45 8.94 16 19 N -0.61 -30.68 2.95 -699.12 -2.06 -32.74 16 20 C -0.27 -15.11 9.51 84.03 0.80 -14.31 16 21 H 0.06 3.28 7.87 -2.91 -0.02 3.25 16 22 C -0.04 -2.43 4.95 84.86 0.42 -2.01 16 23 N -0.93 -55.97 11.58 21.65 0.25 -55.72 16 24 Si 0.97 45.55 29.57 68.60 2.03 47.58 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 26 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 27 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 28 C 0.15 6.18 5.60 86.36 0.48 6.66 16 29 C 0.11 1.88 5.73 86.36 0.49 2.38 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.13 2.69 4.27 -51.23 -0.22 2.47 16 39 H 0.41 11.78 7.19 -92.71 -0.67 11.11 16 40 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 41 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.06 1.74 8.14 -2.39 -0.02 1.73 16 43 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 44 H 0.05 1.89 8.14 -2.39 -0.02 1.88 16 45 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.04 2.09 6.55 -2.39 -0.02 2.07 16 47 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 48 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 49 H 0.05 1.93 7.14 -2.39 -0.02 1.91 16 50 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 51 H 0.08 1.67 7.00 -2.39 -0.02 1.65 16 52 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -68.34 400.35 1.49 -66.86 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.02 Total: 21.47 kcal Atomic # 6 Polarization: 15.09 SS G_CDS: 6.25 Total: 21.35 kcal Atomic # 7 Polarization: -117.73 SS G_CDS: -6.72 Total: -124.45 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.09 Total: -32.79 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -68.34 1.49 -66.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338798005.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.891 kcal (2) G-P(sol) polarization free energy of solvation -68.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds