Wall clock time and date at job start Tue Mar 31 2020 21:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.52659 * 2 1 4 4 C 1.53043 * 109.49906 * 239.91951 * 2 1 3 5 5 C 1.53038 * 109.53997 * 178.68191 * 4 2 1 6 6 C 1.53195 * 109.30974 * 61.37155 * 5 4 2 7 7 N 1.46927 * 108.77346 * 305.36390 * 6 5 4 8 8 C 1.34777 * 120.62761 * 233.63128 * 7 6 5 9 9 O 1.21357 * 119.99900 * 171.40049 * 8 7 6 10 10 C 1.49442 * 120.00592 * 351.40236 * 8 7 6 11 11 O 1.21348 * 119.99466 * 353.40708 * 10 8 7 12 12 N 1.34776 * 120.00520 * 173.40381 * 10 8 7 13 13 C 1.46503 * 120.00154 * 179.97438 * 12 10 8 14 14 C 1.52992 * 109.47075 * 180.02562 * 13 12 10 15 15 H 1.09002 * 109.50055 * 54.93484 * 14 13 12 16 16 C 1.53039 * 109.50001 * 175.00555 * 14 13 12 17 17 C 1.53042 * 109.54346 * 181.31850 * 16 14 13 18 18 C 1.53198 * 109.30790 * 298.63322 * 17 16 14 19 19 N 1.46921 * 108.77675 * 54.63261 * 18 17 16 20 20 C 1.36933 * 120.63167 * 126.41653 * 19 18 17 21 21 H 1.07998 * 120.00331 * 213.21196 * 20 19 18 22 22 C 1.38813 * 120.00060 * 33.20293 * 20 19 18 23 23 N 1.31617 * 119.99954 * 14.09207 * 22 20 19 24 24 Si 1.86803 * 120.00287 * 194.08223 * 22 20 19 25 25 H 1.48500 * 109.46833 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.46918 * 120.00272 * 24 22 20 27 27 H 1.48502 * 109.47211 * 240.00659 * 24 22 20 28 28 C 1.46928 * 118.74118 * 306.38863 * 19 18 17 29 29 C 1.46929 * 118.74109 * 53.60872 * 7 6 5 30 30 H 1.08997 * 109.46968 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47236 * 300.07766 * 1 2 3 32 32 H 1.09005 * 109.46704 * 60.08007 * 1 2 3 33 33 H 1.09001 * 109.45572 * 58.66463 * 4 2 1 34 34 H 1.08999 * 109.46544 * 298.71087 * 4 2 1 35 35 H 1.09006 * 109.49867 * 181.31731 * 5 4 2 36 36 H 1.08995 * 109.49969 * 301.41975 * 5 4 2 37 37 H 1.08997 * 109.59155 * 65.14695 * 6 5 4 38 38 H 1.08995 * 109.58869 * 185.57640 * 6 5 4 39 39 H 0.96996 * 119.99611 * 0.02562 * 12 10 8 40 40 H 1.09002 * 109.47249 * 300.00734 * 13 12 10 41 41 H 1.09005 * 109.46601 * 60.00462 * 13 12 10 42 42 H 1.09006 * 109.45247 * 301.33846 * 16 14 13 43 43 H 1.08997 * 109.46048 * 61.30668 * 16 14 13 44 44 H 1.08993 * 109.49658 * 58.57730 * 17 16 14 45 45 H 1.09000 * 109.49856 * 178.67958 * 17 16 14 46 46 H 1.08993 * 109.58221 * 174.42412 * 18 17 16 47 47 H 1.09004 * 109.58242 * 294.70449 * 18 17 16 48 48 H 0.96999 * 120.00576 * 180.02562 * 23 22 20 49 49 H 1.08994 * 109.58737 * 293.82650 * 28 19 18 50 50 H 1.08994 * 109.58640 * 173.39335 * 28 19 18 51 51 H 1.08995 * 109.58789 * 66.17756 * 29 7 6 52 52 H 1.09002 * 109.58583 * 186.46638 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0409 -0.7231 -1.2484 5 6 3.5709 -0.6950 -1.2660 6 6 4.1053 -1.4268 -0.0309 7 7 3.5046 -0.8293 1.1695 8 6 4.2812 -0.3859 2.1779 9 8 3.7890 0.2443 3.0908 10 6 5.7483 -0.6701 2.1718 11 8 6.2215 -1.3995 1.3253 12 7 6.5459 -0.1164 3.1065 13 6 7.9841 -0.3955 3.1009 14 6 8.6528 0.3498 4.2576 15 1 8.1616 0.0844 5.1938 16 6 10.1314 -0.0384 4.3286 17 6 10.7937 0.6814 5.5057 18 6 10.7011 2.1954 5.2906 19 7 9.2933 2.5574 5.0766 20 6 8.6986 3.5268 5.8393 21 1 7.6508 3.4498 6.0897 22 6 9.4423 4.6084 6.2908 23 7 10.6261 4.8557 5.7714 24 14 8.7630 5.7131 7.6353 25 1 7.4230 5.2237 8.0480 26 1 9.6790 5.6911 8.8038 27 1 8.6470 7.1022 7.1232 28 6 8.5360 1.8601 4.0284 29 6 2.0413 -0.7239 1.2495 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5150 0.8892 32 1 -0.3633 0.5126 -0.8908 33 1 1.6582 -0.2244 -2.1389 34 1 1.6967 -1.7572 -1.2355 35 1 3.9335 -1.1897 -2.1672 36 1 3.9159 0.3388 -1.2540 37 1 3.8375 -2.4819 -0.0868 38 1 5.1895 -1.3248 0.0137 39 1 6.1676 0.4663 3.7834 40 1 8.1467 -1.4670 3.2171 41 1 8.4150 -0.0629 2.1565 42 1 10.2176 -1.1162 4.4671 43 1 10.6273 0.2495 3.4017 44 1 10.2825 0.4135 6.4302 45 1 11.8411 0.3864 5.5698 46 1 11.0820 2.7134 6.1707 47 1 11.2898 2.4771 4.4175 48 1 11.1461 5.6113 6.0871 49 1 8.9460 2.1140 3.0510 50 1 7.4883 2.1568 4.0758 51 1 1.6051 -1.7217 1.2979 52 1 1.7637 -0.1602 2.1402 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338798007.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:04 Heat of formation + Delta-G solvation = -56.778824 kcal Electronic energy + Delta-G solvation = -30094.261199 eV Core-core repulsion = 26093.866967 eV Total energy + Delta-G solvation = -4000.394233 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.06266 -39.17688 -37.89606 -37.77751 -35.18472 -33.89572 -32.98627 -32.14896 -30.53315 -30.41808 -27.64562 -26.59224 -25.55780 -25.24314 -23.08776 -22.58664 -22.07891 -20.98025 -20.62983 -19.87694 -19.04779 -17.66814 -17.10894 -16.64821 -16.20612 -15.80093 -15.54373 -14.99558 -14.89739 -14.75391 -14.58329 -14.14775 -14.06258 -13.74026 -13.59514 -13.46380 -13.28214 -12.95791 -12.81745 -12.54083 -12.35102 -12.27479 -12.22071 -12.07897 -11.63655 -11.40006 -11.30864 -11.17651 -11.01121 -10.87947 -10.75127 -10.71337 -10.53534 -10.23163 -10.19659 -9.95728 -9.67835 -9.44077 -9.29247 -9.09892 -8.93485 -8.48721 -6.61119 -5.80206 -3.28668 1.34789 2.23346 3.11915 3.36481 3.40793 3.44580 3.47139 4.24198 4.40502 4.45384 4.47613 4.54119 4.73860 4.98558 5.01425 5.08772 5.19100 5.25142 5.25791 5.36453 5.38348 5.40651 5.43245 5.46886 5.58770 5.63039 5.67296 5.75784 5.76911 5.78606 5.82055 5.88550 5.94236 6.05146 6.12657 6.18500 6.28936 6.32933 6.42221 6.57998 6.66810 6.74587 6.82423 6.89493 6.94107 7.22673 7.36288 7.63435 7.66630 7.80352 7.94574 8.47031 9.21025 9.82220 10.41880 11.28092 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014517 B = 0.002503 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.289649 B =11182.703134 C =12514.693365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 H 0.076 0.924 4 C -0.116 4.116 5 C -0.137 4.137 6 C 0.069 3.931 7 N -0.585 5.585 8 C 0.508 3.492 9 O -0.518 6.518 10 C 0.506 3.494 11 O -0.521 6.521 12 N -0.686 5.686 13 C 0.124 3.876 14 C -0.120 4.120 15 H 0.075 0.925 16 C -0.098 4.098 17 C -0.142 4.142 18 C 0.172 3.828 19 N -0.590 5.590 20 C -0.257 4.257 21 H 0.064 0.936 22 C 0.007 3.993 23 N -0.900 5.900 24 Si 0.901 3.099 25 H -0.276 1.276 26 H -0.289 1.289 27 H -0.290 1.290 28 C 0.152 3.848 29 C 0.112 3.888 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.142 0.858 39 H 0.416 0.584 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.048 0.952 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.050 0.950 46 H 0.079 0.921 47 H 0.019 0.981 48 H 0.253 0.747 49 H 0.019 0.981 50 H 0.051 0.949 51 H 0.071 0.929 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.151 -14.547 -12.770 23.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 H 0.095 0.905 4 C -0.154 4.154 5 C -0.175 4.175 6 C -0.053 4.053 7 N -0.318 5.318 8 C 0.290 3.710 9 O -0.393 6.393 10 C 0.288 3.712 11 O -0.400 6.400 12 N -0.338 5.338 13 C 0.001 3.999 14 C -0.140 4.140 15 H 0.094 0.906 16 C -0.136 4.136 17 C -0.181 4.181 18 C 0.046 3.954 19 N -0.312 5.312 20 C -0.387 4.387 21 H 0.081 0.919 22 C -0.192 4.192 23 N -0.544 5.544 24 Si 0.731 3.269 25 H -0.201 1.201 26 H -0.215 1.215 27 H -0.216 1.216 28 C 0.025 3.975 29 C -0.010 4.010 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.159 0.841 39 H 0.254 0.746 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.097 0.903 47 H 0.037 0.963 48 H 0.063 0.937 49 H 0.037 0.963 50 H 0.070 0.930 51 H 0.089 0.911 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.942 -14.557 -12.800 23.877 hybrid contribution -0.527 0.873 0.894 1.356 sum -14.469 -13.683 -11.906 23.202 Atomic orbital electron populations 1.21764 0.94221 1.02049 1.02236 1.21504 0.96047 1.00330 0.94766 0.90545 1.21624 0.95616 1.00700 0.97451 1.21965 0.95728 1.01619 0.98181 1.22883 1.03578 0.96443 0.82351 1.47924 1.06599 1.59314 1.17979 1.20194 0.87831 0.80045 0.82916 1.90782 1.74937 1.37821 1.35797 1.20043 0.87362 0.81415 0.82429 1.90465 1.75817 1.37428 1.36285 1.45965 1.08966 1.47997 1.30828 1.21668 0.77720 1.00110 1.00445 1.21995 0.96358 0.98812 0.96879 0.90616 1.21330 0.94216 0.98528 0.99575 1.22177 0.98493 1.00162 0.97306 1.20721 0.85349 0.88863 1.00423 1.43967 1.08476 1.41757 1.36997 1.19172 0.95374 0.98848 1.25274 0.91865 1.25187 0.97449 0.96536 1.00018 1.70024 1.12807 1.29484 1.42082 0.86242 0.78535 0.80404 0.81716 1.20112 1.21538 1.21638 1.20932 0.96056 0.88554 0.91915 1.21803 0.78643 1.01070 0.99500 0.92473 0.92248 0.92220 0.91657 0.91752 0.90461 0.91528 0.91492 0.84076 0.74646 0.91243 0.90822 0.93359 0.92376 0.92697 0.93127 0.90296 0.96281 0.93656 0.96294 0.93012 0.91104 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.20 37.16 0.34 -0.54 16 2 C -0.11 -0.83 2.87 -90.50 -0.26 -1.09 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.12 -0.79 5.17 -26.69 -0.14 -0.93 16 5 C -0.14 -1.07 6.08 -26.61 -0.16 -1.23 16 6 C 0.07 0.66 5.99 -3.71 -0.02 0.64 16 7 N -0.58 -6.55 2.97 -173.28 -0.52 -7.06 16 8 C 0.51 6.96 7.73 -11.59 -0.09 6.87 16 9 O -0.52 -8.27 15.93 5.49 0.09 -8.19 16 10 C 0.51 7.05 7.74 -11.59 -0.09 6.96 16 11 O -0.52 -7.56 13.18 5.50 0.07 -7.49 16 12 N -0.69 -9.52 5.32 -60.73 -0.32 -9.84 16 13 C 0.12 1.70 5.07 -4.04 -0.02 1.68 16 14 C -0.12 -1.92 2.37 -90.50 -0.21 -2.14 16 15 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 16 C -0.10 -1.55 5.17 -26.69 -0.14 -1.69 16 17 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 18 C 0.17 4.02 5.25 -3.71 -0.02 4.00 16 19 N -0.59 -14.49 2.97 -172.32 -0.51 -15.00 16 20 C -0.26 -6.99 9.54 -15.06 -0.14 -7.14 16 21 H 0.06 1.70 7.87 -52.49 -0.41 1.29 16 22 C 0.01 0.21 4.95 -17.43 -0.09 0.12 16 23 N -0.90 -26.08 11.41 55.49 0.63 -25.44 16 24 Si 0.90 21.67 29.58 -169.99 -5.03 16.65 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 C 0.15 3.07 5.60 -3.70 -0.02 3.05 16 29 C 0.11 1.04 5.73 -3.71 -0.02 1.02 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.14 1.62 4.31 -54.83 -0.24 1.38 16 39 H 0.42 5.91 7.20 -40.82 -0.29 5.62 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.08 2.07 6.37 -51.93 -0.33 1.74 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 49 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.05 1.03 7.14 -51.93 -0.37 0.66 16 51 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 52 H 0.09 1.00 7.00 -51.93 -0.36 0.64 16 LS Contribution 400.11 15.07 6.03 6.03 Total: -1.00 -30.56 400.11 -9.98 -40.54 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -9.18 Total: 2.98 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -1.25 Total: 6.82 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: -0.72 Total: -57.35 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: 0.16 Total: -15.67 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.56 -9.98 -40.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338798007.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.240 kcal (2) G-P(sol) polarization free energy of solvation -30.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds