Wall clock time and date at job start Tue Mar 31 2020 21:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.49932 * 2 1 4 4 C 1.53038 * 109.49833 * 120.06606 * 2 1 3 5 5 C 1.53040 * 109.53899 * 181.31527 * 4 2 1 6 6 C 1.53193 * 109.31378 * 298.63761 * 5 4 2 7 7 N 1.46925 * 108.77618 * 54.63198 * 6 5 4 8 8 C 1.34780 * 120.62890 * 126.36916 * 7 6 5 9 9 O 1.21278 * 119.99606 * 185.41613 * 8 7 6 10 10 C 1.50699 * 119.99940 * 5.41748 * 8 7 6 11 11 C 1.53114 * 109.51915 * 145.31051 * 10 8 7 12 12 C 1.53043 * 109.27787 * 177.55979 * 11 10 8 13 13 N 1.46851 * 109.52055 * 300.82241 * 12 11 10 14 14 C 1.46899 * 111.00064 * 185.83959 * 13 12 11 15 15 C 1.50699 * 109.47228 * 169.99868 * 14 13 12 16 16 O 1.21284 * 120.00204 * 359.97438 * 15 14 13 17 17 N 1.34775 * 119.99897 * 179.97438 * 15 14 13 18 18 C 1.37104 * 120.00205 * 179.97438 * 17 15 14 19 19 H 1.08000 * 119.99648 * 0.02562 * 18 17 15 20 20 C 1.38949 * 120.00074 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99842 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00197 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47598 * 89.99554 * 22 20 18 24 24 H 1.48505 * 109.46814 * 209.99617 * 22 20 18 25 25 H 1.48503 * 109.47057 * 329.99533 * 22 20 18 26 26 C 1.46844 * 111.20028 * 61.74005 * 13 12 11 27 27 C 1.53042 * 109.52380 * 298.25803 * 26 13 12 28 28 C 1.46921 * 118.73996 * 306.64386 * 7 6 5 29 29 H 1.08999 * 109.47090 * 299.93110 * 1 2 3 30 30 H 1.08998 * 109.47182 * 59.93408 * 1 2 3 31 31 H 1.09000 * 109.47343 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.45826 * 61.29654 * 4 2 1 33 33 H 1.08993 * 109.45000 * 301.33511 * 4 2 1 34 34 H 1.08997 * 109.49693 * 178.68594 * 5 4 2 35 35 H 1.08995 * 109.49585 * 58.58932 * 5 4 2 36 36 H 1.09003 * 109.58677 * 294.84933 * 6 5 4 37 37 H 1.08995 * 109.58994 * 174.42290 * 6 5 4 38 38 H 1.08999 * 109.57301 * 25.15010 * 10 8 7 39 39 H 1.08997 * 109.50765 * 57.61825 * 11 10 8 40 40 H 1.09003 * 109.50635 * 297.49308 * 11 10 8 41 41 H 1.08998 * 109.46479 * 180.80758 * 12 11 10 42 42 H 1.08995 * 109.46245 * 60.83271 * 12 11 10 43 43 H 1.09004 * 109.47362 * 49.99316 * 14 13 12 44 44 H 1.09005 * 109.47296 * 289.99892 * 14 13 12 45 45 H 0.97003 * 120.00275 * 359.97438 * 17 15 14 46 46 H 0.96997 * 120.00182 * 179.97438 * 21 20 18 47 47 H 1.08993 * 109.46156 * 58.27489 * 26 13 12 48 48 H 1.09002 * 109.46024 * 178.24359 * 26 13 12 49 49 H 1.09001 * 109.50032 * 299.23838 * 27 26 13 50 50 H 1.08996 * 109.53264 * 179.14087 * 27 26 13 51 51 H 1.09005 * 109.59056 * 173.14414 * 28 7 6 52 52 H 1.09003 * 109.58963 * 293.57077 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7227 1.2485 5 6 3.5709 -0.6947 1.2661 6 6 4.1053 -1.4267 0.0311 7 7 3.5046 -0.8294 -1.1694 8 6 4.2812 -0.3861 -2.1779 9 8 3.7810 0.1932 -3.1187 10 6 5.7708 -0.6103 -2.1363 11 6 6.2918 -0.8503 -3.5559 12 6 7.8126 -1.0166 -3.5146 13 7 8.4233 0.1926 -2.9476 14 6 9.8890 0.1256 -3.0198 15 6 10.4715 1.4685 -2.6617 16 8 9.7379 2.3908 -2.3749 17 7 11.8077 1.6446 -2.6600 18 6 12.3377 2.8665 -2.3346 19 1 11.6844 3.6878 -2.0793 20 6 13.7153 3.0479 -2.3323 21 7 14.2232 4.2190 -2.0200 22 14 14.8452 1.6273 -2.7732 23 1 15.0968 1.6306 -4.2367 24 1 16.1332 1.7763 -2.0492 25 1 14.2039 0.3457 -2.3841 26 6 7.9741 0.4173 -1.5678 27 6 6.4582 0.6265 -1.5510 28 6 2.0416 -0.7190 -1.2470 29 1 -0.3633 0.5128 0.8906 30 1 -0.3633 0.5148 -0.8894 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6967 -1.7570 1.2357 33 1 1.6581 -0.2238 2.1388 34 1 3.9334 -1.1892 2.1673 35 1 3.9159 0.3391 1.2540 36 1 3.8375 -2.4818 0.0873 37 1 5.1895 -1.3246 -0.0135 38 1 5.9923 -1.4782 -1.5153 39 1 6.0359 0.0012 -4.1864 40 1 5.8379 -1.7542 -3.9622 41 1 8.1885 -1.1734 -4.5256 42 1 8.0672 -1.8766 -2.8952 43 1 10.1910 -0.1432 -4.0321 44 1 10.2533 -0.6267 -2.3202 45 1 12.3945 0.9069 -2.8889 46 1 15.1849 4.3456 -2.0180 47 1 8.2279 -0.4493 -0.9575 48 1 8.4673 1.3020 -1.1649 49 1 6.2049 1.5013 -2.1499 50 1 6.1225 0.7781 -0.5252 51 1 1.7646 -0.1501 -2.1346 52 1 1.6021 -1.7153 -1.2971 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408020921.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:01 Heat of formation + Delta-G solvation = -74.579589 kcal Electronic energy + Delta-G solvation = -30132.182949 eV Core-core repulsion = 26131.016817 eV Total energy + Delta-G solvation = -4001.166132 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.77420 -39.15415 -38.11630 -37.23313 -34.36367 -33.97746 -33.11588 -32.16353 -31.63992 -30.74859 -28.26308 -27.06706 -25.97584 -24.57034 -23.10206 -22.99520 -22.67394 -20.79849 -19.97710 -19.34156 -18.86760 -18.25450 -17.40771 -16.41668 -15.93659 -15.65848 -15.24326 -15.13140 -14.93612 -14.84420 -14.80473 -14.25495 -14.03794 -13.84402 -13.56288 -13.47953 -13.40740 -13.06574 -12.96857 -12.82539 -12.49092 -12.40163 -12.21961 -12.10416 -11.83124 -11.60815 -11.50735 -11.26584 -11.23877 -11.16457 -11.12123 -11.00395 -10.76949 -10.59076 -10.55261 -10.39653 -9.96156 -9.67129 -9.50054 -8.87906 -8.52615 -8.16057 -7.90870 -6.29409 -3.80608 2.50241 2.74555 3.03028 3.07914 3.15830 3.75856 3.94688 4.11608 4.18931 4.33681 4.42841 4.49802 4.59592 4.64886 4.79761 4.84258 4.86953 4.96558 5.09493 5.13583 5.21111 5.22578 5.28861 5.29314 5.35545 5.38795 5.41866 5.45132 5.48765 5.58186 5.59818 5.67125 5.69557 5.73779 5.74981 5.75751 5.80028 5.90695 5.96029 5.97709 5.99728 6.22887 6.28804 6.38773 6.45845 7.17521 7.22620 7.37826 7.60822 8.05355 8.16797 8.62344 8.97364 9.44535 9.85931 10.83771 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023711 B = 0.002154 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.592197 B =12995.197387 C =13408.109494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 H 0.075 0.925 4 C -0.114 4.114 5 C -0.137 4.137 6 C 0.104 3.896 7 N -0.617 5.617 8 C 0.524 3.476 9 O -0.536 6.536 10 C -0.108 4.108 11 C -0.097 4.097 12 C 0.057 3.943 13 N -0.515 5.515 14 C 0.044 3.956 15 C 0.453 3.547 16 O -0.558 6.558 17 N -0.592 5.592 18 C -0.303 4.303 19 H 0.120 0.880 20 C 0.040 3.960 21 N -0.882 5.882 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C 0.055 3.945 27 C -0.099 4.099 28 C 0.116 3.884 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.029 0.971 43 H 0.090 0.910 44 H 0.048 0.952 45 H 0.370 0.630 46 H 0.273 0.727 47 H 0.023 0.977 48 H 0.108 0.892 49 H 0.082 0.918 50 H 0.065 0.935 51 H 0.091 0.909 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.069 -17.898 5.418 28.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 H 0.093 0.907 4 C -0.152 4.152 5 C -0.176 4.176 6 C -0.019 4.019 7 N -0.350 5.350 8 C 0.313 3.687 9 O -0.412 6.412 10 C -0.129 4.129 11 C -0.136 4.136 12 C -0.071 4.071 13 N -0.240 5.240 14 C -0.088 4.088 15 C 0.238 3.762 16 O -0.439 6.439 17 N -0.232 5.232 18 C -0.432 4.432 19 H 0.137 0.863 20 C -0.163 4.163 21 N -0.522 5.522 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.196 1.196 26 C -0.072 4.072 27 C -0.137 4.137 28 C -0.007 4.007 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.047 0.953 43 H 0.108 0.892 44 H 0.066 0.934 45 H 0.202 0.798 46 H 0.083 0.917 47 H 0.041 0.959 48 H 0.126 0.874 49 H 0.101 0.899 50 H 0.084 0.916 51 H 0.110 0.890 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.793 -16.417 4.842 28.504 hybrid contribution 1.379 -1.826 0.304 2.308 sum -21.415 -18.243 5.146 28.598 Atomic orbital electron populations 1.21760 0.94365 1.01962 1.02169 1.21441 0.95979 1.00400 0.94978 0.90665 1.21583 0.95200 1.00718 0.97654 1.21938 0.96184 1.01798 0.97639 1.21811 0.98954 0.96931 0.84193 1.48153 1.06612 1.61735 1.18548 1.20792 0.89172 0.77313 0.81427 1.90681 1.75397 1.40812 1.34289 1.21479 0.90736 1.00742 0.99939 1.21446 0.94377 1.02956 0.94775 1.22103 0.94377 0.90615 0.99993 1.61467 1.05730 1.36102 1.20718 1.21870 0.88272 0.96652 1.01962 1.19666 0.82533 0.89670 0.84300 1.90528 1.58673 1.42896 1.51820 1.42224 1.05535 1.12511 1.62915 1.19424 0.91816 0.88575 1.43353 0.86273 1.25040 0.96710 0.96799 0.97708 1.69623 1.12878 1.22062 1.47665 0.86671 0.81344 0.81978 0.79367 1.19620 1.20251 1.19563 1.22241 0.94679 1.02016 0.88275 1.21498 0.94897 0.96819 1.00482 1.21540 0.79551 1.00505 0.99086 0.92291 0.92323 0.92547 0.91804 0.91584 0.90486 0.91141 0.91432 0.89168 0.89658 0.89483 0.91647 0.90381 0.95262 0.89163 0.93435 0.79755 0.91658 0.95900 0.87405 0.89900 0.91596 0.89025 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.20 37.16 0.34 -0.50 16 2 C -0.11 -0.79 2.86 -90.72 -0.26 -1.04 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.11 -0.68 5.17 -26.69 -0.14 -0.82 16 5 C -0.14 -0.86 6.08 -26.61 -0.16 -1.02 16 6 C 0.10 0.73 6.16 -3.71 -0.02 0.70 16 7 N -0.62 -6.00 2.98 -173.03 -0.52 -6.51 16 8 C 0.52 6.62 6.70 -10.98 -0.07 6.54 16 9 O -0.54 -8.78 15.64 5.56 0.09 -8.70 16 10 C -0.11 -1.24 1.79 -91.65 -0.16 -1.40 16 11 C -0.10 -1.19 5.08 -26.65 -0.14 -1.32 16 12 C 0.06 0.71 5.46 -3.83 -0.02 0.68 16 13 N -0.52 -8.26 4.40 -236.11 -1.04 -9.30 16 14 C 0.04 0.73 5.45 -4.98 -0.03 0.70 16 15 C 0.45 10.20 7.46 -10.99 -0.08 10.12 16 16 O -0.56 -14.74 13.90 5.55 0.08 -14.67 16 17 N -0.59 -14.03 5.09 -10.96 -0.06 -14.09 16 18 C -0.30 -8.54 10.16 -14.93 -0.15 -8.69 16 19 H 0.12 3.84 7.39 -52.49 -0.39 3.46 16 20 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 21 N -0.88 -25.79 13.96 55.50 0.77 -25.02 16 22 Si 0.88 19.33 27.74 -169.99 -4.71 14.62 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.27 -5.38 6.52 56.52 0.37 -5.02 16 26 C 0.06 0.85 5.11 -3.83 -0.02 0.83 16 27 C -0.10 -1.32 5.29 -26.65 -0.14 -1.46 16 28 C 0.12 1.01 5.70 -3.93 -0.02 0.99 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.61 5.43 -51.93 -0.28 0.33 16 38 H 0.09 0.79 6.19 -51.93 -0.32 0.47 16 39 H 0.09 1.29 7.78 -51.93 -0.40 0.88 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.89 8.02 -51.93 -0.42 0.48 16 42 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.09 1.32 7.99 -51.93 -0.41 0.91 16 44 H 0.05 0.70 8.12 -51.93 -0.42 0.27 16 45 H 0.37 7.69 5.76 -40.82 -0.24 7.45 16 46 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 47 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 48 H 0.11 2.06 5.78 -51.93 -0.30 1.76 16 49 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 50 H 0.07 0.76 8.01 -51.93 -0.42 0.35 16 51 H 0.09 0.98 7.00 -51.93 -0.36 0.62 16 52 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 397.32 15.07 5.99 5.99 Total: -1.00 -34.08 397.32 -9.62 -43.70 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -9.05 Total: 8.65 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -1.17 Total: 5.33 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.83 Total: -54.92 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: 0.16 Total: -23.36 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.71 Total: 14.62 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.08 -9.62 -43.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408020921.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.882 kcal (2) G-P(sol) polarization free energy of solvation -34.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds