Wall clock time and date at job start Tue Mar 31 2020 21:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.49932 * 2 1 4 4 C 1.53038 * 109.49833 * 120.06606 * 2 1 3 5 5 C 1.53040 * 109.53899 * 181.31527 * 4 2 1 6 6 C 1.53193 * 109.31378 * 298.63761 * 5 4 2 7 7 N 1.46925 * 108.77618 * 54.63198 * 6 5 4 8 8 C 1.34780 * 120.62890 * 126.36916 * 7 6 5 9 9 O 1.21278 * 119.99606 * 185.41613 * 8 7 6 10 10 C 1.50699 * 119.99940 * 5.41748 * 8 7 6 11 11 C 1.53114 * 109.51915 * 145.31051 * 10 8 7 12 12 C 1.53043 * 109.27787 * 177.55979 * 11 10 8 13 13 N 1.46851 * 109.52055 * 300.82241 * 12 11 10 14 14 C 1.46899 * 111.00064 * 185.83959 * 13 12 11 15 15 C 1.50699 * 109.47228 * 169.99868 * 14 13 12 16 16 O 1.21284 * 120.00204 * 359.97438 * 15 14 13 17 17 N 1.34775 * 119.99897 * 179.97438 * 15 14 13 18 18 C 1.37104 * 120.00205 * 179.97438 * 17 15 14 19 19 H 1.08000 * 119.99648 * 0.02562 * 18 17 15 20 20 C 1.38949 * 120.00074 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99842 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00197 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47598 * 89.99554 * 22 20 18 24 24 H 1.48505 * 109.46814 * 209.99617 * 22 20 18 25 25 H 1.48503 * 109.47057 * 329.99533 * 22 20 18 26 26 C 1.46844 * 111.20028 * 61.74005 * 13 12 11 27 27 C 1.53042 * 109.52380 * 298.25803 * 26 13 12 28 28 C 1.46921 * 118.73996 * 306.64386 * 7 6 5 29 29 H 1.08999 * 109.47090 * 299.93110 * 1 2 3 30 30 H 1.08998 * 109.47182 * 59.93408 * 1 2 3 31 31 H 1.09000 * 109.47343 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.45826 * 61.29654 * 4 2 1 33 33 H 1.08993 * 109.45000 * 301.33511 * 4 2 1 34 34 H 1.08997 * 109.49693 * 178.68594 * 5 4 2 35 35 H 1.08995 * 109.49585 * 58.58932 * 5 4 2 36 36 H 1.09003 * 109.58677 * 294.84933 * 6 5 4 37 37 H 1.08995 * 109.58994 * 174.42290 * 6 5 4 38 38 H 1.08999 * 109.57301 * 25.15010 * 10 8 7 39 39 H 1.08997 * 109.50765 * 57.61825 * 11 10 8 40 40 H 1.09003 * 109.50635 * 297.49308 * 11 10 8 41 41 H 1.08998 * 109.46479 * 180.80758 * 12 11 10 42 42 H 1.08995 * 109.46245 * 60.83271 * 12 11 10 43 43 H 1.09004 * 109.47362 * 49.99316 * 14 13 12 44 44 H 1.09005 * 109.47296 * 289.99892 * 14 13 12 45 45 H 0.97003 * 120.00275 * 359.97438 * 17 15 14 46 46 H 0.96997 * 120.00182 * 179.97438 * 21 20 18 47 47 H 1.08993 * 109.46156 * 58.27489 * 26 13 12 48 48 H 1.09002 * 109.46024 * 178.24359 * 26 13 12 49 49 H 1.09001 * 109.50032 * 299.23838 * 27 26 13 50 50 H 1.08996 * 109.53264 * 179.14087 * 27 26 13 51 51 H 1.09005 * 109.59056 * 173.14414 * 28 7 6 52 52 H 1.09003 * 109.58963 * 293.57077 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7227 1.2485 5 6 3.5709 -0.6947 1.2661 6 6 4.1053 -1.4267 0.0311 7 7 3.5046 -0.8294 -1.1694 8 6 4.2812 -0.3861 -2.1779 9 8 3.7810 0.1932 -3.1187 10 6 5.7708 -0.6103 -2.1363 11 6 6.2918 -0.8503 -3.5559 12 6 7.8126 -1.0166 -3.5146 13 7 8.4233 0.1926 -2.9476 14 6 9.8890 0.1256 -3.0198 15 6 10.4715 1.4685 -2.6617 16 8 9.7379 2.3908 -2.3749 17 7 11.8077 1.6446 -2.6600 18 6 12.3377 2.8665 -2.3346 19 1 11.6844 3.6878 -2.0793 20 6 13.7153 3.0479 -2.3323 21 7 14.2232 4.2190 -2.0200 22 14 14.8452 1.6273 -2.7732 23 1 15.0968 1.6306 -4.2367 24 1 16.1332 1.7763 -2.0492 25 1 14.2039 0.3457 -2.3841 26 6 7.9741 0.4173 -1.5678 27 6 6.4582 0.6265 -1.5510 28 6 2.0416 -0.7190 -1.2470 29 1 -0.3633 0.5128 0.8906 30 1 -0.3633 0.5148 -0.8894 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6967 -1.7570 1.2357 33 1 1.6581 -0.2238 2.1388 34 1 3.9334 -1.1892 2.1673 35 1 3.9159 0.3391 1.2540 36 1 3.8375 -2.4818 0.0873 37 1 5.1895 -1.3246 -0.0135 38 1 5.9923 -1.4782 -1.5153 39 1 6.0359 0.0012 -4.1864 40 1 5.8379 -1.7542 -3.9622 41 1 8.1885 -1.1734 -4.5256 42 1 8.0672 -1.8766 -2.8952 43 1 10.1910 -0.1432 -4.0321 44 1 10.2533 -0.6267 -2.3202 45 1 12.3945 0.9069 -2.8889 46 1 15.1849 4.3456 -2.0180 47 1 8.2279 -0.4493 -0.9575 48 1 8.4673 1.3020 -1.1649 49 1 6.2049 1.5013 -2.1499 50 1 6.1225 0.7781 -0.5252 51 1 1.7646 -0.1501 -2.1346 52 1 1.6021 -1.7153 -1.2971 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408020921.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:00 Heat of formation + Delta-G solvation = -99.356140 kcal Electronic energy + Delta-G solvation = -30133.257341 eV Core-core repulsion = 26131.016817 eV Total energy + Delta-G solvation = -4002.240524 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.68036 -40.56313 -39.26021 -38.38675 -35.99831 -35.13604 -34.20871 -33.69472 -32.76560 -31.81106 -29.52342 -27.87022 -26.92860 -26.04358 -24.27225 -24.14463 -23.24939 -21.60179 -21.23983 -20.82336 -20.17723 -19.72578 -18.27547 -17.72799 -17.23468 -16.85958 -16.51826 -16.35258 -16.08958 -15.78038 -15.48792 -15.39678 -15.26965 -14.97743 -14.87482 -14.51982 -14.45222 -14.26114 -14.05681 -13.86710 -13.76323 -13.52091 -13.22844 -13.01130 -12.89470 -12.70979 -12.70406 -12.41811 -12.36173 -12.14378 -12.02671 -11.96191 -11.87033 -11.73595 -11.56876 -11.46339 -11.36835 -11.30590 -10.67463 -10.29150 -10.20126 -9.65219 -9.11655 -8.39149 -5.99704 1.31199 1.37607 1.46010 1.53156 1.97214 1.99640 2.24973 2.65637 3.16652 3.24443 3.41324 3.71915 3.77830 3.79760 3.88407 3.91679 4.06314 4.12620 4.15926 4.28053 4.31722 4.36476 4.42146 4.45339 4.51011 4.54292 4.57389 4.64539 4.68347 4.72769 4.78833 4.83923 4.85003 4.86950 4.91408 4.99926 5.09575 5.14053 5.15312 5.19752 5.26084 5.29500 5.36612 5.46547 5.55729 5.58138 5.93808 6.09346 6.29833 6.35795 6.62938 6.91652 7.13485 7.43230 8.01618 8.78683 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023711 B = 0.002154 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.592197 B =12995.197387 C =13408.109494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 H 0.049 0.951 4 C -0.110 4.110 5 C -0.137 4.137 6 C 0.098 3.902 7 N -0.611 5.611 8 C 0.518 3.482 9 O -0.586 6.586 10 C -0.097 4.097 11 C -0.096 4.096 12 C 0.062 3.938 13 N -0.548 5.548 14 C 0.057 3.943 15 C 0.450 3.550 16 O -0.606 6.606 17 N -0.593 5.593 18 C -0.325 4.325 19 H 0.053 0.947 20 C -0.019 4.019 21 N -0.937 5.937 22 Si 0.967 3.033 23 H -0.259 1.259 24 H -0.276 1.276 25 H -0.229 1.229 26 C 0.060 3.940 27 C -0.090 4.090 28 C 0.113 3.887 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.050 0.950 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.123 0.877 39 H 0.049 0.951 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.062 0.938 43 H 0.120 0.880 44 H 0.084 0.916 45 H 0.390 0.610 46 H 0.278 0.722 47 H 0.055 0.945 48 H 0.060 0.940 49 H 0.039 0.961 50 H 0.081 0.919 51 H 0.063 0.937 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.792 -23.539 6.090 32.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 H 0.068 0.932 4 C -0.148 4.148 5 C -0.175 4.175 6 C -0.024 4.024 7 N -0.343 5.343 8 C 0.307 3.693 9 O -0.466 6.466 10 C -0.119 4.119 11 C -0.134 4.134 12 C -0.065 4.065 13 N -0.273 5.273 14 C -0.074 4.074 15 C 0.238 3.762 16 O -0.490 6.490 17 N -0.235 5.235 18 C -0.454 4.454 19 H 0.071 0.929 20 C -0.217 4.217 21 N -0.578 5.578 22 Si 0.787 3.213 23 H -0.183 1.183 24 H -0.201 1.201 25 H -0.152 1.152 26 C -0.067 4.067 27 C -0.129 4.129 28 C -0.009 4.009 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.140 0.860 39 H 0.068 0.932 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.080 0.920 43 H 0.138 0.862 44 H 0.102 0.898 45 H 0.225 0.775 46 H 0.088 0.912 47 H 0.073 0.927 48 H 0.079 0.921 49 H 0.058 0.942 50 H 0.099 0.901 51 H 0.082 0.918 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -22.551 -22.103 5.548 32.061 hybrid contribution 1.124 0.061 0.149 1.136 sum -21.427 -22.042 5.697 31.264 Atomic orbital electron populations 1.21736 0.93175 1.02857 1.02129 1.21400 0.96970 0.98990 0.95157 0.93211 1.21578 0.94965 1.01429 0.96804 1.21951 0.96409 1.00861 0.98259 1.22101 0.99246 0.98149 0.82901 1.48281 1.06943 1.60478 1.18603 1.21036 0.89863 0.76940 0.81438 1.90662 1.76279 1.43187 1.36505 1.21425 0.89584 1.00708 1.00135 1.21417 0.94970 1.02410 0.94592 1.22165 0.93552 0.89780 1.01004 1.61365 1.05619 1.39084 1.21278 1.21800 0.88535 0.92704 1.04372 1.20991 0.81811 0.91665 0.81751 1.90526 1.59852 1.45513 1.53147 1.42041 1.06407 1.11437 1.63620 1.18977 0.91869 0.89237 1.45349 0.92894 1.26147 0.98210 1.00654 0.96669 1.69814 1.13716 1.25326 1.48918 0.85340 0.77932 0.78622 0.79449 1.18326 1.20121 1.15166 1.22069 0.94909 1.01138 0.88609 1.21352 0.94382 0.96373 1.00746 1.21623 0.79255 1.01361 0.98705 0.91610 0.93153 0.91120 0.90150 0.90956 0.88261 0.93098 0.88825 0.88583 0.85953 0.93215 0.89417 0.89140 0.92012 0.86198 0.89842 0.77491 0.91236 0.92729 0.92136 0.94238 0.90093 0.91836 0.89698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.20 71.98 0.66 -0.83 16 2 C -0.11 -1.46 2.86 -10.86 -0.03 -1.49 16 3 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.11 -1.04 5.17 30.62 0.16 -0.89 16 5 C -0.14 -1.37 6.08 30.67 0.19 -1.19 16 6 C 0.10 1.05 6.16 86.36 0.53 1.58 16 7 N -0.61 -11.11 2.98 -819.73 -2.44 -13.56 16 8 C 0.52 12.99 6.70 87.66 0.59 13.57 16 9 O -0.59 -20.26 15.64 -3.02 -0.05 -20.30 16 10 C -0.10 -2.08 1.79 -11.46 -0.02 -2.10 16 11 C -0.10 -2.17 5.08 30.65 0.16 -2.02 16 12 C 0.06 1.30 5.46 86.33 0.47 1.77 16 13 N -0.55 -16.65 4.40 -900.91 -3.96 -20.61 16 14 C 0.06 1.72 5.45 85.56 0.47 2.19 16 15 C 0.45 20.40 7.46 87.66 0.65 21.05 16 16 O -0.61 -33.97 13.90 -3.04 -0.04 -34.01 16 17 N -0.59 -27.96 5.09 -306.99 -1.56 -29.53 16 18 C -0.33 -19.17 10.16 84.04 0.85 -18.32 16 19 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 20 C -0.02 -1.04 5.50 84.93 0.47 -0.58 16 21 N -0.94 -57.02 13.96 21.66 0.30 -56.71 16 22 Si 0.97 38.76 27.74 68.60 1.90 40.67 16 23 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 24 H -0.28 -11.00 7.11 99.48 0.71 -10.30 16 25 H -0.23 -7.58 6.52 99.48 0.65 -6.93 16 26 C 0.06 1.81 5.11 86.33 0.44 2.25 16 27 C -0.09 -2.44 5.29 30.65 0.16 -2.28 16 28 C 0.11 1.91 5.70 86.22 0.49 2.40 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.10 0.93 5.43 -2.39 -0.01 0.92 16 38 H 0.12 1.73 6.19 -2.39 -0.01 1.71 16 39 H 0.05 1.51 7.78 -2.39 -0.02 1.49 16 40 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.09 1.70 8.02 -2.39 -0.02 1.68 16 42 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.12 2.98 7.99 -2.38 -0.02 2.96 16 44 H 0.08 2.00 8.12 -2.38 -0.02 1.98 16 45 H 0.39 15.06 5.76 -92.71 -0.53 14.52 16 46 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 47 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.06 2.41 5.78 -2.39 -0.01 2.39 16 49 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 50 H 0.08 1.88 8.01 -2.39 -0.02 1.86 16 51 H 0.06 1.45 7.00 -2.38 -0.02 1.43 16 52 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -84.80 397.32 0.70 -84.10 By element: Atomic # 1 Polarization: 34.50 SS G_CDS: 0.31 Total: 34.81 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 6.24 Total: 15.14 kcal Atomic # 7 Polarization: -112.74 SS G_CDS: -7.66 Total: -120.40 kcal Atomic # 8 Polarization: -54.22 SS G_CDS: -0.09 Total: -54.31 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 1.90 Total: 40.67 kcal Total: -84.80 0.70 -84.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408020921.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.255 kcal (2) G-P(sol) polarization free energy of solvation -84.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds