Wall clock time and date at job start Tue Mar 31 2020 20:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.86727 * 2 1 4 4 C 1.54470 * 109.87301 * 120.99975 * 2 1 3 5 5 C 1.54338 * 103.01290 * 97.88337 * 4 2 1 6 6 C 1.54550 * 102.33788 * 34.57072 * 5 4 2 7 7 N 1.47078 * 109.87667 * 238.84500 * 2 1 3 8 8 C 1.34776 * 125.62596 * 59.62852 * 7 2 1 9 9 O 1.21354 * 119.99717 * 359.97438 * 8 7 2 10 10 C 1.49445 * 119.99937 * 179.97438 * 8 7 2 11 11 O 1.21351 * 120.00500 * 0.02562 * 10 8 7 12 12 N 1.34780 * 119.99924 * 179.97438 * 10 8 7 13 13 C 1.46496 * 119.99917 * 180.02562 * 12 10 8 14 14 C 1.53009 * 109.46976 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47097 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.46950 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99715 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99808 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99857 * 0.02562 * 18 16 15 20 20 Si 1.86788 * 119.99816 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47427 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47439 * 120.00058 * 20 18 16 23 23 H 1.48506 * 109.47408 * 239.99953 * 20 18 16 24 24 C 1.52156 * 110.59438 * 276.50854 * 5 4 2 25 25 C 1.53216 * 109.35529 * 292.23963 * 24 5 4 26 26 N 1.46856 * 109.40960 * 302.25074 * 25 24 5 27 27 C 1.46857 * 111.34927 * 62.37882 * 26 25 24 28 28 C 1.52140 * 110.59760 * 152.83162 * 5 4 2 29 29 H 1.08993 * 109.47327 * 291.86875 * 1 2 3 30 30 H 1.09002 * 109.46853 * 51.87211 * 1 2 3 31 31 H 1.08996 * 109.47180 * 171.86574 * 1 2 3 32 32 H 1.08995 * 110.73552 * 216.31036 * 4 2 1 33 33 H 1.08992 * 110.73819 * 339.45184 * 4 2 1 34 34 H 1.08998 * 110.35148 * 205.19019 * 6 5 4 35 35 H 1.08998 * 110.45805 * 82.90986 * 6 5 4 36 36 H 0.96999 * 119.99480 * 0.02562 * 12 10 8 37 37 H 1.09004 * 109.47388 * 299.99986 * 13 12 10 38 38 H 1.08992 * 109.47362 * 60.00634 * 13 12 10 39 39 H 1.09004 * 109.46598 * 299.99915 * 14 13 12 40 40 H 1.09000 * 109.47238 * 59.99591 * 14 13 12 41 41 H 1.09000 * 109.46820 * 299.99678 * 15 14 13 42 42 H 1.09001 * 109.46983 * 59.99552 * 15 14 13 43 43 H 0.97006 * 119.99864 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.48604 * 52.20469 * 24 5 4 45 45 H 1.09001 * 109.49061 * 172.27725 * 24 5 4 46 46 H 1.08999 * 109.48278 * 182.26577 * 25 24 5 47 47 H 1.09001 * 109.48354 * 62.23067 * 25 24 5 48 48 H 1.00904 * 110.99875 * 298.17370 * 26 25 24 49 49 H 1.09001 * 109.48434 * 177.62783 * 27 26 25 50 50 H 1.09001 * 109.48231 * 57.59017 * 27 26 25 51 51 H 1.09001 * 109.49597 * 187.72276 * 28 5 4 52 52 H 1.09000 * 109.48704 * 307.79709 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0551 -0.7482 1.2452 5 6 2.3673 -2.1572 0.6981 6 6 2.8564 -1.8536 -0.7362 7 7 2.0301 -0.7156 -1.1837 8 6 1.7761 -0.3861 -2.4656 9 8 1.0799 0.5751 -2.7185 10 6 2.3519 -1.2045 -3.5756 11 8 3.0478 -2.1660 -3.3227 12 7 2.0975 -0.8754 -4.8576 13 6 2.6615 -1.6780 -5.9456 14 6 2.2233 -1.0939 -7.2903 15 6 2.8118 -1.9325 -8.4267 16 6 2.3796 -1.3575 -9.7510 17 1 1.7481 -0.4819 -9.7792 18 6 2.7906 -1.9494 -10.9265 19 7 3.5592 -3.0160 -10.8920 20 14 2.2556 -1.2364 -12.5680 21 1 1.4009 -0.0445 -12.3350 22 1 3.4543 -0.8401 -13.3499 23 1 1.4866 -2.2573 -13.3242 24 6 1.1084 -3.0114 0.6701 25 6 0.6604 -3.3029 2.1060 26 7 1.7475 -3.9746 2.8295 27 6 2.9357 -3.1170 2.9257 28 6 3.4641 -2.8192 1.5187 29 1 -0.3633 0.3828 0.9536 30 1 -0.3633 0.6345 -0.8084 31 1 -0.3633 -1.0173 -0.1454 32 1 2.9588 -0.2739 1.6278 33 1 1.2887 -0.7956 2.0187 34 1 2.6956 -2.7167 -1.3821 35 1 3.9108 -1.5773 -0.7286 36 1 1.5410 -0.1071 -5.0597 37 1 3.7495 -1.6641 -5.8812 38 1 2.3056 -2.7047 -5.8619 39 1 1.1353 -1.1075 -7.3549 40 1 2.5794 -0.0671 -7.3738 41 1 3.8998 -1.9193 -8.3621 42 1 2.4552 -2.9591 -8.3429 43 1 3.8480 -3.4327 -11.7190 44 1 0.3177 -2.4766 0.1438 45 1 1.3172 -3.9500 0.1567 46 1 -0.2180 -3.9480 2.0889 47 1 0.4143 -2.3667 2.6072 48 1 1.9741 -4.8597 2.4012 49 1 3.7067 -3.6273 3.5030 50 1 2.6704 -2.1823 3.4197 51 1 3.7658 -3.7502 1.0388 52 1 4.3218 -2.1499 1.5864 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424526288.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:28 Heat of formation + Delta-G solvation = -82.205419 kcal Electronic energy + Delta-G solvation = -29942.552784 eV Core-core repulsion = 25941.055972 eV Total energy + Delta-G solvation = -4001.496813 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.47613 -40.01356 -38.43109 -36.94774 -35.60600 -33.39959 -32.63857 -32.19100 -31.28089 -31.25394 -27.66052 -27.25390 -26.31550 -24.81020 -23.48675 -22.96933 -22.62629 -21.29073 -20.75032 -19.66744 -19.13446 -17.78311 -17.13840 -16.47027 -16.35324 -16.15318 -15.64354 -15.34037 -15.10458 -14.98045 -14.62389 -14.47036 -14.37782 -14.17943 -13.84233 -13.70515 -13.48384 -13.35468 -13.03599 -12.69879 -12.46307 -12.33773 -12.21641 -11.92287 -11.84260 -11.81046 -11.64572 -11.60677 -11.33128 -11.12110 -10.94523 -10.78275 -10.75623 -10.59151 -10.56924 -9.92664 -9.72441 -9.35434 -9.13757 -9.08590 -8.92856 -8.77082 -8.40088 -6.04623 -4.07525 1.42271 2.20797 3.20703 3.28817 3.36407 3.39963 3.43796 3.80293 3.94023 4.08791 4.21982 4.41764 4.46029 4.55613 4.64615 4.67514 4.73342 4.92033 4.92653 4.94364 5.12665 5.22721 5.26120 5.31478 5.32980 5.36322 5.42274 5.50564 5.55989 5.56973 5.58749 5.60974 5.66687 5.68155 5.80146 5.88874 5.95019 6.05464 6.08426 6.27605 6.51806 6.58116 6.69272 6.92935 6.93064 6.99126 7.29642 7.59859 7.70356 7.71150 7.93830 8.04852 8.35094 8.99181 9.56937 11.06689 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023779 B = 0.001927 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.222100 B =14523.193830 C =15147.766019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.134 3.866 3 H 0.079 0.921 4 C -0.120 4.120 5 C -0.070 4.070 6 C 0.109 3.891 7 N -0.588 5.588 8 C 0.522 3.478 9 O -0.520 6.520 10 C 0.502 3.498 11 O -0.523 6.523 12 N -0.691 5.691 13 C 0.115 3.885 14 C -0.123 4.123 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.057 0.943 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.894 3.106 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.150 4.150 25 C 0.058 3.942 26 N -0.687 5.687 27 C 0.059 3.941 28 C -0.142 4.142 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.411 0.589 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.261 0.739 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.342 0.658 49 H 0.076 0.924 50 H 0.073 0.927 51 H 0.069 0.931 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.268 1.792 31.315 31.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.031 3.969 3 H 0.097 0.903 4 C -0.158 4.158 5 C -0.071 4.071 6 C -0.014 4.014 7 N -0.322 5.322 8 C 0.305 3.695 9 O -0.396 6.396 10 C 0.282 3.718 11 O -0.400 6.400 12 N -0.343 5.343 13 C -0.007 4.007 14 C -0.161 4.161 15 C -0.013 4.013 16 C -0.560 4.560 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.188 4.188 25 C -0.072 4.072 26 N -0.316 5.316 27 C -0.071 4.071 28 C -0.181 4.181 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.120 0.880 35 H 0.091 0.909 36 H 0.247 0.753 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.070 0.930 44 H 0.096 0.904 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.092 0.908 48 H 0.159 0.841 49 H 0.094 0.906 50 H 0.092 0.908 51 H 0.087 0.913 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.313 1.696 31.767 31.984 hybrid contribution -0.044 0.686 -2.156 2.263 sum -3.357 2.382 29.611 29.895 Atomic orbital electron populations 1.22304 0.94324 1.02977 1.02900 1.21678 0.95053 0.96279 0.83868 0.90318 1.22802 1.02070 0.94567 0.96353 1.21202 0.96058 0.95113 0.94743 1.22720 0.94535 0.89866 0.94250 1.48350 1.49591 1.30128 1.04161 1.20021 0.81628 0.85060 0.82805 1.90748 1.37684 1.27996 1.83194 1.19948 0.82228 0.85292 0.84333 1.90707 1.37753 1.28033 1.83537 1.46070 1.50977 1.32372 1.04882 1.21834 0.98704 0.94837 0.85339 1.21931 1.00862 1.00593 0.92686 1.19036 0.96327 0.94896 0.91073 1.21239 1.31077 1.12827 0.90879 0.92508 1.25033 0.95119 0.94994 0.99381 1.69975 1.35299 1.20578 1.27443 0.86513 0.78421 0.79089 0.83833 1.19723 1.20994 1.20988 1.22248 0.97367 1.00137 0.99091 1.22080 0.94293 0.99606 0.91209 1.60602 1.08512 1.06694 1.55759 1.22052 0.92166 0.97898 0.94999 1.22078 0.97552 1.01453 0.97057 0.91508 0.91021 0.91835 0.90297 0.89458 0.87998 0.90859 0.75347 0.91136 0.91147 0.92439 0.92429 0.96204 0.96210 0.92970 0.90444 0.91417 0.90606 0.90768 0.84072 0.90556 0.90811 0.91259 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 8.81 37.16 0.33 -1.06 16 2 C 0.13 1.15 3.38 -66.84 -0.23 0.92 16 3 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.12 -0.72 4.58 -25.26 -0.12 -0.84 16 5 C -0.07 -0.47 0.55 -153.86 -0.09 -0.55 16 6 C 0.11 1.04 4.97 -2.63 -0.01 1.03 16 7 N -0.59 -6.46 3.08 -163.48 -0.50 -6.96 16 8 C 0.52 7.20 7.70 -11.59 -0.09 7.11 16 9 O -0.52 -8.00 15.52 5.49 0.09 -7.92 16 10 C 0.50 7.63 7.86 -11.59 -0.09 7.54 16 11 O -0.52 -8.68 13.80 5.50 0.08 -8.61 16 12 N -0.69 -10.51 5.55 -60.73 -0.34 -10.84 16 13 C 0.11 1.97 5.67 -4.04 -0.02 1.95 16 14 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 15 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 16 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 20 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 C -0.15 -1.00 4.83 -27.05 -0.13 -1.13 16 25 C 0.06 0.33 6.39 -3.74 -0.02 0.31 16 26 N -0.69 -4.00 6.85 -113.60 -0.78 -4.78 16 27 C 0.06 0.30 6.40 -3.74 -0.02 0.27 16 28 C -0.14 -0.78 4.85 -27.06 -0.13 -0.91 16 29 H 0.07 0.41 8.03 -51.93 -0.42 0.00 16 30 H 0.07 0.76 7.03 -51.93 -0.37 0.39 16 31 H 0.06 0.54 5.48 -51.93 -0.28 0.25 16 32 H 0.08 0.42 7.93 -51.93 -0.41 0.01 16 33 H 0.09 0.44 5.93 -51.93 -0.31 0.13 16 34 H 0.10 1.18 6.11 -51.93 -0.32 0.86 16 35 H 0.07 0.71 8.02 -51.93 -0.42 0.30 16 36 H 0.41 5.76 7.94 -40.82 -0.32 5.44 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.08 0.60 5.08 -51.93 -0.26 0.33 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.41 6.54 -51.93 -0.34 0.07 16 48 H 0.34 1.81 8.85 -39.29 -0.35 1.47 16 49 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.07 0.37 7.58 -51.93 -0.39 -0.02 16 51 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 52 H 0.07 0.38 8.04 -51.93 -0.42 -0.04 16 LS Contribution 397.91 15.07 6.00 6.00 Total: -1.00 -31.46 397.91 -9.86 -41.32 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -8.80 Total: 1.99 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -1.32 Total: -0.77 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: -0.88 Total: -48.49 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: 0.16 Total: -16.53 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.46 -9.86 -41.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424526288.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.889 kcal (2) G-P(sol) polarization free energy of solvation -31.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds