Wall clock time and date at job start Tue Mar 31 2020 20:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.86727 * 2 1 4 4 C 1.54470 * 109.87301 * 120.99975 * 2 1 3 5 5 C 1.54338 * 103.01290 * 97.88337 * 4 2 1 6 6 C 1.54550 * 102.33788 * 34.57072 * 5 4 2 7 7 N 1.47078 * 109.87667 * 238.84500 * 2 1 3 8 8 C 1.34776 * 125.62596 * 59.62852 * 7 2 1 9 9 O 1.21354 * 119.99717 * 359.97438 * 8 7 2 10 10 C 1.49445 * 119.99937 * 179.97438 * 8 7 2 11 11 O 1.21351 * 120.00500 * 0.02562 * 10 8 7 12 12 N 1.34780 * 119.99924 * 179.97438 * 10 8 7 13 13 C 1.46496 * 119.99917 * 180.02562 * 12 10 8 14 14 C 1.53009 * 109.46976 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47097 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.46950 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99715 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99808 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99857 * 0.02562 * 18 16 15 20 20 Si 1.86788 * 119.99816 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47427 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47439 * 120.00058 * 20 18 16 23 23 H 1.48506 * 109.47408 * 239.99953 * 20 18 16 24 24 C 1.52156 * 110.59438 * 276.50854 * 5 4 2 25 25 C 1.53216 * 109.35529 * 292.23963 * 24 5 4 26 26 N 1.46856 * 109.40960 * 302.25074 * 25 24 5 27 27 C 1.46857 * 111.34927 * 62.37882 * 26 25 24 28 28 C 1.52140 * 110.59760 * 152.83162 * 5 4 2 29 29 H 1.08993 * 109.47327 * 291.86875 * 1 2 3 30 30 H 1.09002 * 109.46853 * 51.87211 * 1 2 3 31 31 H 1.08996 * 109.47180 * 171.86574 * 1 2 3 32 32 H 1.08995 * 110.73552 * 216.31036 * 4 2 1 33 33 H 1.08992 * 110.73819 * 339.45184 * 4 2 1 34 34 H 1.08998 * 110.35148 * 205.19019 * 6 5 4 35 35 H 1.08998 * 110.45805 * 82.90986 * 6 5 4 36 36 H 0.96999 * 119.99480 * 0.02562 * 12 10 8 37 37 H 1.09004 * 109.47388 * 299.99986 * 13 12 10 38 38 H 1.08992 * 109.47362 * 60.00634 * 13 12 10 39 39 H 1.09004 * 109.46598 * 299.99915 * 14 13 12 40 40 H 1.09000 * 109.47238 * 59.99591 * 14 13 12 41 41 H 1.09000 * 109.46820 * 299.99678 * 15 14 13 42 42 H 1.09001 * 109.46983 * 59.99552 * 15 14 13 43 43 H 0.97006 * 119.99864 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.48604 * 52.20469 * 24 5 4 45 45 H 1.09001 * 109.49061 * 172.27725 * 24 5 4 46 46 H 1.08999 * 109.48278 * 182.26577 * 25 24 5 47 47 H 1.09001 * 109.48354 * 62.23067 * 25 24 5 48 48 H 1.00904 * 110.99875 * 298.17370 * 26 25 24 49 49 H 1.09001 * 109.48434 * 177.62783 * 27 26 25 50 50 H 1.09001 * 109.48231 * 57.59017 * 27 26 25 51 51 H 1.09001 * 109.49597 * 187.72276 * 28 5 4 52 52 H 1.09000 * 109.48704 * 307.79709 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0551 -0.7482 1.2452 5 6 2.3673 -2.1572 0.6981 6 6 2.8564 -1.8536 -0.7362 7 7 2.0301 -0.7156 -1.1837 8 6 1.7761 -0.3861 -2.4656 9 8 1.0799 0.5751 -2.7185 10 6 2.3519 -1.2045 -3.5756 11 8 3.0478 -2.1660 -3.3227 12 7 2.0975 -0.8754 -4.8576 13 6 2.6615 -1.6780 -5.9456 14 6 2.2233 -1.0939 -7.2903 15 6 2.8118 -1.9325 -8.4267 16 6 2.3796 -1.3575 -9.7510 17 1 1.7481 -0.4819 -9.7792 18 6 2.7906 -1.9494 -10.9265 19 7 3.5592 -3.0160 -10.8920 20 14 2.2556 -1.2364 -12.5680 21 1 1.4009 -0.0445 -12.3350 22 1 3.4543 -0.8401 -13.3499 23 1 1.4866 -2.2573 -13.3242 24 6 1.1084 -3.0114 0.6701 25 6 0.6604 -3.3029 2.1060 26 7 1.7475 -3.9746 2.8295 27 6 2.9357 -3.1170 2.9257 28 6 3.4641 -2.8192 1.5187 29 1 -0.3633 0.3828 0.9536 30 1 -0.3633 0.6345 -0.8084 31 1 -0.3633 -1.0173 -0.1454 32 1 2.9588 -0.2739 1.6278 33 1 1.2887 -0.7956 2.0187 34 1 2.6956 -2.7167 -1.3821 35 1 3.9108 -1.5773 -0.7286 36 1 1.5410 -0.1071 -5.0597 37 1 3.7495 -1.6641 -5.8812 38 1 2.3056 -2.7047 -5.8619 39 1 1.1353 -1.1075 -7.3549 40 1 2.5794 -0.0671 -7.3738 41 1 3.8998 -1.9193 -8.3621 42 1 2.4552 -2.9591 -8.3429 43 1 3.8480 -3.4327 -11.7190 44 1 0.3177 -2.4766 0.1438 45 1 1.3172 -3.9500 0.1567 46 1 -0.2180 -3.9480 2.0889 47 1 0.4143 -2.3667 2.6072 48 1 1.9741 -4.8597 2.4012 49 1 3.7067 -3.6273 3.5030 50 1 2.6704 -2.1823 3.4197 51 1 3.7658 -3.7502 1.0388 52 1 4.3218 -2.1499 1.5864 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424526288.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:25 Heat of formation + Delta-G solvation = -104.239873 kcal Electronic energy + Delta-G solvation = -29943.508270 eV Core-core repulsion = 25941.055972 eV Total energy + Delta-G solvation = -4002.452298 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -42.31852 -40.98261 -39.50200 -37.73769 -37.06419 -35.27483 -33.33522 -33.05482 -32.94151 -31.76010 -29.05165 -28.18735 -27.14811 -26.14665 -24.49315 -23.93890 -23.16404 -22.41600 -22.28035 -20.70473 -19.81858 -18.89462 -18.46865 -18.08694 -17.41371 -17.11521 -16.60838 -16.52067 -16.26314 -15.98467 -15.72025 -15.46898 -15.25136 -15.02157 -14.86509 -14.57678 -14.32689 -14.30041 -13.94419 -13.79711 -13.66338 -13.57841 -13.38189 -13.08224 -12.87887 -12.80257 -12.69473 -12.57364 -12.39824 -12.20271 -12.12265 -12.03313 -11.76283 -11.73780 -11.57036 -11.28742 -11.23302 -11.11625 -10.60535 -10.57560 -10.36080 -9.90671 -9.23887 -8.21649 -6.32520 0.25751 1.15037 1.40203 1.40735 1.53819 2.03756 2.35319 2.42267 3.12261 3.17425 3.26467 3.46644 3.55180 3.67502 3.97322 4.04201 4.07558 4.13171 4.13965 4.21446 4.32232 4.36593 4.45154 4.48543 4.56866 4.62979 4.69196 4.72286 4.79128 4.84082 4.87650 4.87757 4.93545 4.98733 5.04668 5.09101 5.11270 5.13458 5.16503 5.23368 5.31311 5.40763 5.42027 5.49253 5.67656 5.82013 5.94833 6.14836 6.16444 6.21589 6.51235 6.58747 6.84258 6.85463 7.36864 8.90469 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023779 B = 0.001927 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.222100 B =14523.193830 C =15147.766019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.126 3.874 3 H 0.078 0.922 4 C -0.109 4.109 5 C -0.061 4.061 6 C 0.105 3.895 7 N -0.581 5.581 8 C 0.521 3.479 9 O -0.540 6.540 10 C 0.501 3.499 11 O -0.540 6.540 12 N -0.687 5.687 13 C 0.130 3.870 14 C -0.106 4.106 15 C 0.025 3.975 16 C -0.542 4.542 17 H 0.064 0.936 18 C -0.003 4.003 19 N -0.933 5.933 20 Si 0.966 3.034 21 H -0.261 1.261 22 H -0.279 1.279 23 H -0.279 1.279 24 C -0.146 4.146 25 C 0.064 3.936 26 N -0.694 5.694 27 C 0.062 3.938 28 C -0.137 4.137 29 H 0.093 0.907 30 H 0.045 0.955 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.418 0.582 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.066 0.934 41 H -0.004 1.004 42 H -0.004 1.004 43 H 0.264 0.736 44 H 0.067 0.933 45 H 0.056 0.944 46 H 0.077 0.923 47 H 0.082 0.918 48 H 0.343 0.657 49 H 0.084 0.916 50 H 0.080 0.920 51 H 0.062 0.938 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.910 2.896 33.166 33.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.025 3.975 3 H 0.096 0.904 4 C -0.146 4.146 5 C -0.062 4.062 6 C -0.017 4.017 7 N -0.314 5.314 8 C 0.304 3.696 9 O -0.419 6.419 10 C 0.281 3.719 11 O -0.418 6.418 12 N -0.339 5.339 13 C 0.007 3.993 14 C -0.144 4.144 15 C -0.012 4.012 16 C -0.580 4.580 17 H 0.082 0.918 18 C -0.200 4.200 19 N -0.573 5.573 20 Si 0.791 3.209 21 H -0.185 1.185 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.185 4.185 25 C -0.066 4.066 26 N -0.322 5.322 27 C -0.068 4.068 28 C -0.176 4.176 29 H 0.112 0.888 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.124 0.876 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.255 0.745 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.015 0.985 42 H 0.015 0.985 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.095 0.905 47 H 0.100 0.900 48 H 0.161 0.839 49 H 0.102 0.898 50 H 0.099 0.901 51 H 0.081 0.919 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.959 2.806 33.663 34.011 hybrid contribution 0.188 0.287 -2.676 2.698 sum -3.772 3.092 30.987 31.369 Atomic orbital electron populations 1.22264 0.93964 1.02405 1.03355 1.21954 0.95407 0.96426 0.83756 0.90353 1.22810 1.03195 0.93286 0.95312 1.21150 0.96384 0.95845 0.92848 1.22796 0.94495 0.88592 0.95814 1.48472 1.48716 1.30258 1.03918 1.19678 0.81798 0.84776 0.83391 1.90739 1.38797 1.28750 1.83568 1.20283 0.81824 0.85157 0.84587 1.90705 1.38443 1.28768 1.83852 1.45888 1.51071 1.32386 1.04597 1.21462 0.98282 0.94591 0.85000 1.21644 1.00982 0.99946 0.91799 1.18931 0.95027 0.94580 0.92689 1.21700 1.31037 1.13077 0.92148 0.91811 1.25993 0.95116 0.95334 1.03588 1.70104 1.36546 1.22017 1.28633 0.85380 0.78173 0.78607 0.78765 1.18487 1.20493 1.20478 1.22204 0.97026 0.99422 0.99803 1.22044 0.94329 0.99995 0.90217 1.60629 1.08893 1.07000 1.55689 1.22073 0.92031 0.98165 0.94485 1.22049 0.97272 1.01168 0.97125 0.88850 0.93561 0.92074 0.88806 0.87625 0.90183 0.90825 0.74489 0.91771 0.91782 0.91526 0.91514 0.98515 0.98520 0.92759 0.91477 0.92570 0.90482 0.89989 0.83897 0.89810 0.90119 0.91938 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 8.81 71.98 0.63 -1.83 16 2 C 0.13 1.97 3.38 45.38 0.15 2.12 16 3 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 4 C -0.11 -1.01 4.58 31.55 0.14 -0.87 16 5 C -0.06 -0.72 0.55 -51.76 -0.03 -0.75 16 6 C 0.10 1.98 4.97 86.70 0.43 2.41 16 7 N -0.58 -12.49 3.08 -789.50 -2.43 -14.92 16 8 C 0.52 14.42 7.70 87.27 0.67 15.09 16 9 O -0.54 -16.64 15.52 -3.26 -0.05 -16.69 16 10 C 0.50 15.38 7.86 87.27 0.69 16.07 16 11 O -0.54 -18.27 13.80 -3.25 -0.04 -18.32 16 12 N -0.69 -20.93 5.55 -464.41 -2.58 -23.50 16 13 C 0.13 4.51 5.67 86.38 0.49 5.00 16 14 C -0.11 -4.13 5.27 30.60 0.16 -3.97 16 15 C 0.03 1.31 4.97 29.85 0.15 1.46 16 16 C -0.54 -30.36 9.11 25.60 0.23 -30.13 16 17 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 18 C 0.00 -0.15 5.46 84.66 0.46 0.32 16 19 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 20 Si 0.97 44.08 29.54 68.60 2.03 46.11 16 21 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 24 C -0.15 -1.78 4.83 30.39 0.15 -1.64 16 25 C 0.06 0.60 6.39 86.38 0.55 1.15 16 26 N -0.69 -6.64 6.85 -513.31 -3.52 -10.15 16 27 C 0.06 0.47 6.40 86.38 0.55 1.02 16 28 C -0.14 -1.23 4.85 30.38 0.15 -1.08 16 29 H 0.09 0.91 8.03 -2.39 -0.02 0.89 16 30 H 0.05 0.95 7.03 -2.39 -0.02 0.94 16 31 H 0.06 0.96 5.48 -2.39 -0.01 0.95 16 32 H 0.09 0.67 7.93 -2.39 -0.02 0.65 16 33 H 0.11 0.67 5.93 -2.39 -0.01 0.65 16 34 H 0.08 1.90 6.11 -2.39 -0.01 1.88 16 35 H 0.07 1.39 8.02 -2.39 -0.02 1.37 16 36 H 0.42 11.59 7.94 -92.71 -0.74 10.85 16 37 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 38 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 40 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 42 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 43 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 44 H 0.07 0.98 5.08 -2.39 -0.01 0.97 16 45 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.08 0.66 6.54 -2.39 -0.02 0.65 16 48 H 0.34 3.13 8.85 -89.69 -0.79 2.34 16 49 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 50 H 0.08 0.53 7.58 -2.39 -0.02 0.51 16 51 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 52 H 0.08 0.64 8.04 -2.39 -0.02 0.62 16 Total: -1.00 -68.30 397.91 -1.32 -69.62 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -0.60 Total: 19.81 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 5.59 Total: 4.37 kcal Atomic # 7 Polarization: -96.67 SS G_CDS: -8.24 Total: -104.91 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -0.10 Total: -35.00 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -68.30 -1.32 -69.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424526288.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.618 kcal (2) G-P(sol) polarization free energy of solvation -68.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds