Wall clock time and date at job start Tue Mar 31 2020 20:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 120.00212 * 2 1 4 4 N 1.46904 * 109.47050 * 125.00071 * 3 2 1 5 5 C 1.46897 * 110.99735 * 287.82348 * 4 3 2 6 6 C 1.50698 * 109.47130 * 158.91385 * 5 4 3 7 7 H 1.07997 * 119.99987 * 4.88095 * 6 5 4 8 8 C 1.37875 * 120.00177 * 184.86852 * 6 5 4 9 9 N 1.31523 * 120.00237 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 119.99969 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47531 * 89.99485 * 10 8 6 12 12 H 1.48504 * 109.46806 * 209.99449 * 10 8 6 13 13 H 1.48499 * 109.47167 * 329.98957 * 10 8 6 14 14 C 1.46903 * 110.99983 * 163.87434 * 4 3 2 15 15 C 1.50701 * 109.46826 * 293.95198 * 14 4 3 16 16 O 1.21231 * 119.99962 * 359.97438 * 15 14 4 17 17 N 1.34779 * 119.99982 * 180.02562 * 15 14 4 18 18 C 1.34767 * 119.99926 * 179.97438 * 17 15 14 19 19 O 1.21540 * 120.00619 * 0.02562 * 18 17 15 20 20 N 1.34779 * 120.00157 * 179.97438 * 18 17 15 21 21 C 1.46506 * 120.00315 * 179.97438 * 20 18 17 22 22 H 1.08993 * 109.46864 * 325.00401 * 21 20 18 23 23 C 1.53000 * 109.46669 * 85.00305 * 21 20 18 24 24 C 1.53002 * 109.46936 * 179.97438 * 23 21 20 25 25 C 1.53002 * 109.47115 * 299.99982 * 24 23 21 26 26 C 1.53010 * 109.46899 * 59.99949 * 25 24 23 27 27 C 1.52993 * 109.46972 * 205.00193 * 21 20 18 28 28 H 1.09002 * 109.47694 * 300.00387 * 27 21 20 29 29 C 1.53000 * 109.47332 * 60.00518 * 27 21 20 30 30 H 1.07997 * 120.00305 * 180.02562 * 1 2 3 31 31 H 1.08005 * 119.99472 * 0.02562 * 1 2 3 32 32 H 1.08007 * 119.99955 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.46927 * 5.00029 * 3 2 1 34 34 H 1.09004 * 109.47185 * 244.99527 * 3 2 1 35 35 H 1.09001 * 109.47454 * 278.91692 * 5 4 3 36 36 H 1.09005 * 109.47164 * 38.91661 * 5 4 3 37 37 H 0.96992 * 119.99825 * 180.02562 * 9 8 6 38 38 H 1.08991 * 109.46964 * 173.94955 * 14 4 3 39 39 H 1.08998 * 109.47023 * 53.94726 * 14 4 3 40 40 H 0.96995 * 119.99834 * 359.97438 * 17 15 14 41 41 H 0.97000 * 119.99456 * 0.02562 * 20 18 17 42 42 H 1.09002 * 109.46838 * 60.00323 * 23 21 20 43 43 H 1.08999 * 109.47180 * 299.99906 * 23 21 20 44 44 H 1.09003 * 109.46726 * 60.00062 * 24 23 21 45 45 H 1.08995 * 109.47050 * 180.02562 * 24 23 21 46 46 H 1.08997 * 109.47074 * 179.97438 * 25 24 23 47 47 H 1.08991 * 109.47247 * 300.00342 * 25 24 23 48 48 H 1.08999 * 109.46874 * 179.97438 * 26 25 24 49 49 H 1.09001 * 109.46815 * 60.00243 * 26 25 24 50 50 H 1.09003 * 109.47363 * 59.99337 * 29 27 21 51 51 H 1.09004 * 109.47637 * 179.97438 * 29 27 21 52 52 H 1.09002 * 109.46853 * 299.99287 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9964 1.3319 1.1345 5 6 2.2760 1.4934 2.4046 6 6 3.1430 1.0107 3.5387 7 1 4.1583 0.6966 3.3464 8 6 2.6402 0.9702 4.8219 9 7 3.3967 0.5484 5.8116 10 14 0.8841 1.5131 5.1544 11 1 -0.0271 0.3475 5.0265 12 1 0.7891 2.0670 6.5290 13 1 0.4941 2.5564 4.1723 14 6 4.0039 2.3872 0.9629 15 6 4.8824 2.0559 -0.2159 16 8 4.6887 1.0409 -0.8499 17 7 5.8841 2.8875 -0.5646 18 6 6.6701 2.5909 -1.6184 19 8 6.4754 1.5738 -2.2546 20 7 7.6715 3.4227 -1.9674 21 6 8.5263 3.1001 -3.1127 22 1 8.6668 2.0207 -3.1684 23 6 7.8631 3.5953 -4.3995 24 6 8.7561 3.2590 -5.5955 25 6 10.1144 3.9426 -5.4260 26 6 10.7775 3.4473 -4.1391 27 6 9.8848 3.7832 -2.9435 28 1 9.7443 4.8627 -2.8876 29 6 10.5479 3.2880 -1.6567 30 1 -0.5400 -0.9352 0.0004 31 1 -0.5399 0.9354 -0.0004 32 1 1.8500 -0.9354 0.0004 33 1 1.3586 2.1316 0.0896 34 1 2.6214 1.4026 -0.9314 35 1 2.0347 2.5458 2.5542 36 1 1.3557 0.9100 2.3770 37 1 3.0428 0.5196 6.7142 38 1 4.6144 2.4564 1.8631 39 1 3.5053 3.3405 0.7878 40 1 6.0393 3.6993 -0.0570 41 1 7.8266 4.2346 -1.4599 42 1 7.7226 4.6748 -4.3436 43 1 6.8952 3.1087 -4.5199 44 1 8.8970 2.1795 -5.6514 45 1 8.2838 3.6122 -6.5121 46 1 10.7507 3.7026 -6.2778 47 1 9.9734 5.0219 -5.3699 48 1 11.7453 3.9340 -4.0186 49 1 10.9184 2.3679 -4.1952 50 1 10.6885 2.2085 -1.7125 51 1 11.5160 3.7743 -1.5363 52 1 9.9120 3.5281 -0.8046 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428863761.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:59 Heat of formation + Delta-G solvation = -48.657012 kcal Electronic energy + Delta-G solvation = -29780.596811 eV Core-core repulsion = 25780.554767 eV Total energy + Delta-G solvation = -4000.042044 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.11257 -39.57825 -38.09376 -36.51924 -34.54495 -34.09385 -33.16392 -32.79318 -32.25962 -29.89836 -28.58872 -27.32280 -26.54722 -24.21774 -23.29726 -21.92826 -21.47627 -20.67701 -20.32751 -20.12998 -19.25237 -18.57995 -17.10624 -16.84404 -16.14015 -15.92650 -15.24610 -15.11885 -14.85343 -14.76294 -14.55331 -14.41583 -14.16522 -13.90888 -13.62627 -13.48059 -13.30687 -13.19468 -12.91156 -12.72196 -12.36914 -12.26796 -11.94509 -11.79511 -11.59352 -11.50877 -11.25636 -11.24316 -10.94574 -10.83065 -10.73451 -10.62520 -10.57956 -10.51907 -10.48457 -9.97141 -9.87578 -9.38593 -9.27722 -9.18981 -8.78765 -8.57709 -7.48063 -6.07232 -4.04791 2.35367 2.37430 2.77473 3.27398 3.34736 3.36155 3.43279 3.84382 4.22594 4.34356 4.39956 4.49990 4.71897 4.74337 4.83114 4.91832 5.03899 5.07478 5.10747 5.13115 5.25314 5.34461 5.38243 5.43298 5.53785 5.63124 5.65141 5.66671 5.67695 5.72647 5.79641 5.82693 5.91020 5.93753 5.96783 5.98845 6.07379 6.11653 6.23557 6.34576 6.40798 6.57579 6.77287 6.79838 7.11673 7.19993 7.50448 7.59503 7.82672 7.89060 8.32830 8.45274 8.61941 9.02110 9.54227 11.05808 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017749 B = 0.002338 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.166434 B =11972.512821 C =13131.428775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.111 4.111 3 C 0.073 3.927 4 N -0.507 5.507 5 C 0.164 3.836 6 C -0.509 4.509 7 H 0.081 0.919 8 C 0.070 3.930 9 N -0.899 5.899 10 Si 0.873 3.127 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.269 1.269 14 C 0.048 3.952 15 C 0.514 3.486 16 O -0.448 6.448 17 N -0.695 5.695 18 C 0.695 3.305 19 O -0.532 6.532 20 N -0.737 5.737 21 C 0.167 3.833 22 H 0.090 0.910 23 C -0.131 4.131 24 C -0.117 4.117 25 C -0.121 4.121 26 C -0.111 4.111 27 C -0.097 4.097 28 H 0.075 0.925 29 C -0.149 4.149 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.025 0.975 34 H 0.084 0.916 35 H -0.009 1.009 36 H 0.033 0.967 37 H 0.264 0.736 38 H 0.122 0.878 39 H 0.057 0.943 40 H 0.407 0.593 41 H 0.396 0.604 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.067 0.933 49 H 0.066 0.934 50 H 0.057 0.943 51 H 0.056 0.944 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.275 12.977 -19.372 26.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.130 4.130 3 C -0.055 4.055 4 N -0.231 5.231 5 C 0.038 3.962 6 C -0.547 4.547 7 H 0.099 0.901 8 C -0.132 4.132 9 N -0.538 5.538 10 Si 0.700 3.300 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.193 1.193 14 C -0.084 4.084 15 C 0.299 3.701 16 O -0.313 6.313 17 N -0.362 5.362 18 C 0.395 3.605 19 O -0.403 6.403 20 N -0.394 5.394 21 C 0.062 3.938 22 H 0.108 0.892 23 C -0.170 4.170 24 C -0.155 4.155 25 C -0.159 4.159 26 C -0.149 4.149 27 C -0.116 4.116 28 H 0.093 0.907 29 C -0.206 4.206 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.132 0.868 33 H 0.043 0.957 34 H 0.102 0.898 35 H 0.009 0.991 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.140 0.860 39 H 0.075 0.925 40 H 0.241 0.759 41 H 0.230 0.770 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.076 0.924 51 H 0.075 0.925 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.170 10.854 -20.123 25.901 hybrid contribution -1.176 1.926 0.990 2.464 sum 10.994 12.780 -19.133 25.501 Atomic orbital electron populations 1.23682 0.95936 1.01116 1.04687 1.22859 0.95131 0.99020 0.95948 1.21377 0.94185 0.94303 0.95619 1.61609 1.14477 1.44341 1.02706 1.20255 0.94708 0.94890 0.86338 1.21019 1.00869 1.43159 0.89702 0.90129 1.24883 0.97272 0.94912 0.96136 1.69893 1.36443 1.47200 1.00216 0.86897 0.85933 0.79528 0.77606 1.20049 1.21225 1.19334 1.21935 0.95589 0.94352 0.96482 1.21300 0.79884 0.82940 0.85926 1.90781 1.66694 1.22970 1.50901 1.44343 1.32936 1.27458 1.31495 1.16182 0.79782 0.83717 0.80837 1.91058 1.70798 1.25176 1.53292 1.45350 1.33582 1.26052 1.34408 1.20906 0.87997 1.00963 0.83906 0.89208 1.21956 0.99665 1.01195 0.94179 1.21499 0.95262 1.01070 0.97717 1.21578 0.96480 1.00299 0.97536 1.21555 0.98111 1.01764 0.93520 1.21394 0.93971 1.00358 0.95894 0.90682 1.21843 1.00352 1.01719 0.96709 0.88776 0.89349 0.86830 0.95662 0.89786 0.99140 0.94853 0.92643 0.86005 0.92533 0.75857 0.77047 0.91899 0.91179 0.91611 0.91755 0.91846 0.91951 0.91458 0.91517 0.92373 0.92460 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.54 14.32 29.02 0.42 -3.12 16 2 C -0.11 -2.07 8.76 -36.02 -0.32 -2.38 16 3 C 0.07 1.37 4.96 -4.97 -0.02 1.34 16 4 N -0.51 -10.69 4.10 -238.96 -0.98 -11.67 16 5 C 0.16 3.87 3.66 -4.98 -0.02 3.85 16 6 C -0.51 -14.13 9.21 -34.44 -0.32 -14.44 16 7 H 0.08 2.45 7.98 -52.49 -0.42 2.03 16 8 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 9 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 10 Si 0.87 21.15 27.37 -169.99 -4.65 16.50 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 13 H -0.27 -6.21 6.68 56.52 0.38 -5.83 16 14 C 0.05 0.82 5.26 -4.97 -0.03 0.80 16 15 C 0.51 8.75 7.33 -10.98 -0.08 8.67 16 16 O -0.45 -9.71 12.88 -18.21 -0.23 -9.94 16 17 N -0.70 -8.69 5.24 -15.78 -0.08 -8.77 16 18 C 0.69 9.62 8.47 -86.93 -0.74 8.89 16 19 O -0.53 -10.20 14.41 -18.47 -0.27 -10.47 16 20 N -0.74 -6.68 4.39 -58.69 -0.26 -6.94 16 21 C 0.17 1.47 1.90 -67.93 -0.13 1.34 16 22 H 0.09 1.04 7.58 -51.93 -0.39 0.64 16 23 C -0.13 -1.12 5.49 -26.73 -0.15 -1.26 16 24 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 25 C -0.12 -0.69 5.92 -26.73 -0.16 -0.84 16 26 C -0.11 -0.64 5.20 -26.75 -0.14 -0.78 16 27 C -0.10 -0.61 2.29 -90.65 -0.21 -0.82 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 C -0.15 -0.99 9.04 37.16 0.34 -0.65 16 30 H 0.09 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.09 1.35 7.84 -52.48 -0.41 0.93 16 32 H 0.11 2.20 8.06 -52.48 -0.42 1.78 16 33 H 0.03 0.44 7.70 -51.93 -0.40 0.04 16 34 H 0.08 1.59 5.81 -51.93 -0.30 1.29 16 35 H -0.01 -0.21 7.37 -51.93 -0.38 -0.59 16 36 H 0.03 0.81 6.28 -51.93 -0.33 0.49 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.12 2.13 7.44 -51.93 -0.39 1.74 16 39 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 40 H 0.41 3.15 8.71 -40.82 -0.36 2.80 16 41 H 0.40 2.29 8.40 -40.82 -0.34 1.94 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 50 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 52 H 0.06 0.39 7.44 -51.93 -0.39 0.01 16 LS Contribution 411.11 15.07 6.20 6.20 Total: -1.00 -36.31 411.11 -10.49 -46.80 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -9.18 Total: 3.14 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -1.80 Total: 1.48 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -0.55 Total: -53.70 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.50 Total: -20.41 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.65 Total: 16.50 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -36.31 -10.49 -46.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428863761.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.857 kcal (2) G-P(sol) polarization free energy of solvation -36.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds