Wall clock time and date at job start Tue Mar 31 2020 20:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 120.00212 * 2 1 4 4 N 1.46904 * 109.47050 * 125.00071 * 3 2 1 5 5 C 1.46897 * 110.99735 * 287.82348 * 4 3 2 6 6 C 1.50698 * 109.47130 * 158.91385 * 5 4 3 7 7 H 1.07997 * 119.99987 * 4.88095 * 6 5 4 8 8 C 1.37875 * 120.00177 * 184.86852 * 6 5 4 9 9 N 1.31523 * 120.00237 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 119.99969 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47531 * 89.99485 * 10 8 6 12 12 H 1.48504 * 109.46806 * 209.99449 * 10 8 6 13 13 H 1.48499 * 109.47167 * 329.98957 * 10 8 6 14 14 C 1.46903 * 110.99983 * 163.87434 * 4 3 2 15 15 C 1.50701 * 109.46826 * 293.95198 * 14 4 3 16 16 O 1.21231 * 119.99962 * 359.97438 * 15 14 4 17 17 N 1.34779 * 119.99982 * 180.02562 * 15 14 4 18 18 C 1.34767 * 119.99926 * 179.97438 * 17 15 14 19 19 O 1.21540 * 120.00619 * 0.02562 * 18 17 15 20 20 N 1.34779 * 120.00157 * 179.97438 * 18 17 15 21 21 C 1.46506 * 120.00315 * 179.97438 * 20 18 17 22 22 H 1.08993 * 109.46864 * 325.00401 * 21 20 18 23 23 C 1.53000 * 109.46669 * 85.00305 * 21 20 18 24 24 C 1.53002 * 109.46936 * 179.97438 * 23 21 20 25 25 C 1.53002 * 109.47115 * 299.99982 * 24 23 21 26 26 C 1.53010 * 109.46899 * 59.99949 * 25 24 23 27 27 C 1.52993 * 109.46972 * 205.00193 * 21 20 18 28 28 H 1.09002 * 109.47694 * 300.00387 * 27 21 20 29 29 C 1.53000 * 109.47332 * 60.00518 * 27 21 20 30 30 H 1.07997 * 120.00305 * 180.02562 * 1 2 3 31 31 H 1.08005 * 119.99472 * 0.02562 * 1 2 3 32 32 H 1.08007 * 119.99955 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.46927 * 5.00029 * 3 2 1 34 34 H 1.09004 * 109.47185 * 244.99527 * 3 2 1 35 35 H 1.09001 * 109.47454 * 278.91692 * 5 4 3 36 36 H 1.09005 * 109.47164 * 38.91661 * 5 4 3 37 37 H 0.96992 * 119.99825 * 180.02562 * 9 8 6 38 38 H 1.08991 * 109.46964 * 173.94955 * 14 4 3 39 39 H 1.08998 * 109.47023 * 53.94726 * 14 4 3 40 40 H 0.96995 * 119.99834 * 359.97438 * 17 15 14 41 41 H 0.97000 * 119.99456 * 0.02562 * 20 18 17 42 42 H 1.09002 * 109.46838 * 60.00323 * 23 21 20 43 43 H 1.08999 * 109.47180 * 299.99906 * 23 21 20 44 44 H 1.09003 * 109.46726 * 60.00062 * 24 23 21 45 45 H 1.08995 * 109.47050 * 180.02562 * 24 23 21 46 46 H 1.08997 * 109.47074 * 179.97438 * 25 24 23 47 47 H 1.08991 * 109.47247 * 300.00342 * 25 24 23 48 48 H 1.08999 * 109.46874 * 179.97438 * 26 25 24 49 49 H 1.09001 * 109.46815 * 60.00243 * 26 25 24 50 50 H 1.09003 * 109.47363 * 59.99337 * 29 27 21 51 51 H 1.09004 * 109.47637 * 179.97438 * 29 27 21 52 52 H 1.09002 * 109.46853 * 299.99287 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9964 1.3319 1.1345 5 6 2.2760 1.4934 2.4046 6 6 3.1430 1.0107 3.5387 7 1 4.1583 0.6966 3.3464 8 6 2.6402 0.9702 4.8219 9 7 3.3967 0.5484 5.8116 10 14 0.8841 1.5131 5.1544 11 1 -0.0271 0.3475 5.0265 12 1 0.7891 2.0670 6.5290 13 1 0.4941 2.5564 4.1723 14 6 4.0039 2.3872 0.9629 15 6 4.8824 2.0559 -0.2159 16 8 4.6887 1.0409 -0.8499 17 7 5.8841 2.8875 -0.5646 18 6 6.6701 2.5909 -1.6184 19 8 6.4754 1.5738 -2.2546 20 7 7.6715 3.4227 -1.9674 21 6 8.5263 3.1001 -3.1127 22 1 8.6668 2.0207 -3.1684 23 6 7.8631 3.5953 -4.3995 24 6 8.7561 3.2590 -5.5955 25 6 10.1144 3.9426 -5.4260 26 6 10.7775 3.4473 -4.1391 27 6 9.8848 3.7832 -2.9435 28 1 9.7443 4.8627 -2.8876 29 6 10.5479 3.2880 -1.6567 30 1 -0.5400 -0.9352 0.0004 31 1 -0.5399 0.9354 -0.0004 32 1 1.8500 -0.9354 0.0004 33 1 1.3586 2.1316 0.0896 34 1 2.6214 1.4026 -0.9314 35 1 2.0347 2.5458 2.5542 36 1 1.3557 0.9100 2.3770 37 1 3.0428 0.5196 6.7142 38 1 4.6144 2.4564 1.8631 39 1 3.5053 3.3405 0.7878 40 1 6.0393 3.6993 -0.0570 41 1 7.8266 4.2346 -1.4599 42 1 7.7226 4.6748 -4.3436 43 1 6.8952 3.1087 -4.5199 44 1 8.8970 2.1795 -5.6514 45 1 8.2838 3.6122 -6.5121 46 1 10.7507 3.7026 -6.2778 47 1 9.9734 5.0219 -5.3699 48 1 11.7453 3.9340 -4.0186 49 1 10.9184 2.3679 -4.1952 50 1 10.6885 2.2085 -1.7125 51 1 11.5160 3.7743 -1.5363 52 1 9.9120 3.5281 -0.8046 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428863761.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:56 Heat of formation + Delta-G solvation = -73.890628 kcal Electronic energy + Delta-G solvation = -29781.691023 eV Core-core repulsion = 25780.554767 eV Total energy + Delta-G solvation = -4001.136256 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.29267 -40.53226 -39.24041 -37.99441 -35.77304 -35.07000 -34.90370 -34.04792 -33.40088 -30.77612 -30.25488 -28.76030 -27.19543 -25.75431 -24.41835 -22.99736 -22.21694 -21.93183 -21.56091 -21.01235 -20.66679 -19.59912 -18.92217 -18.34348 -17.33357 -16.96460 -16.55534 -16.46851 -16.20588 -15.79155 -15.58229 -15.30387 -15.26789 -15.04122 -15.01089 -14.79978 -14.52157 -14.26381 -14.16353 -13.82747 -13.57742 -13.35242 -13.05677 -12.84982 -12.81739 -12.51539 -12.45469 -12.37315 -12.19200 -12.08078 -11.93904 -11.83764 -11.80868 -11.46812 -11.44180 -11.34407 -11.22699 -11.11000 -10.74826 -10.67566 -10.18106 -10.06959 -9.04463 -8.24250 -6.27395 1.05050 1.27063 1.38903 1.40528 1.42211 1.50260 2.24119 2.37837 2.83669 3.09476 3.30530 3.60611 3.72765 3.77070 3.94019 4.07593 4.16376 4.21851 4.23278 4.34121 4.41628 4.47556 4.47898 4.52683 4.55689 4.60897 4.70140 4.77000 4.83361 4.88746 4.97805 5.00278 5.02277 5.06549 5.10897 5.16341 5.17941 5.25381 5.28681 5.35839 5.40369 5.45005 5.52528 5.56923 5.62386 5.74007 5.78893 6.05802 6.26190 6.60737 6.64250 6.78610 7.14253 7.35900 7.37459 8.92381 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017749 B = 0.002338 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.166434 B =11972.512821 C =13131.428775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.149 4.149 3 C 0.081 3.919 4 N -0.538 5.538 5 C 0.178 3.822 6 C -0.512 4.512 7 H 0.035 0.965 8 C 0.010 3.990 9 N -0.948 5.948 10 Si 0.944 3.056 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.243 1.243 14 C 0.050 3.950 15 C 0.520 3.480 16 O -0.500 6.500 17 N -0.675 5.675 18 C 0.692 3.308 19 O -0.588 6.588 20 N -0.711 5.711 21 C 0.165 3.835 22 H 0.055 0.945 23 C -0.126 4.126 24 C -0.117 4.117 25 C -0.116 4.116 26 C -0.112 4.112 27 C -0.087 4.087 28 H 0.099 0.901 29 C -0.150 4.150 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.007 0.993 36 H 0.030 0.970 37 H 0.266 0.734 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.432 0.568 41 H 0.417 0.583 42 H 0.082 0.918 43 H 0.035 0.965 44 H 0.049 0.951 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.085 0.915 49 H 0.053 0.947 50 H 0.038 0.962 51 H 0.073 0.927 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.483 16.467 -20.061 28.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.168 4.168 3 C -0.046 4.046 4 N -0.262 5.262 5 C 0.051 3.949 6 C -0.551 4.551 7 H 0.054 0.946 8 C -0.187 4.187 9 N -0.589 5.589 10 Si 0.768 3.232 11 H -0.199 1.199 12 H -0.208 1.208 13 H -0.166 1.166 14 C -0.081 4.081 15 C 0.307 3.693 16 O -0.370 6.370 17 N -0.343 5.343 18 C 0.392 3.608 19 O -0.464 6.464 20 N -0.369 5.369 21 C 0.060 3.940 22 H 0.073 0.927 23 C -0.165 4.165 24 C -0.156 4.156 25 C -0.153 4.153 26 C -0.150 4.150 27 C -0.106 4.106 28 H 0.117 0.883 29 C -0.207 4.207 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.109 0.891 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.025 0.975 36 H 0.048 0.952 37 H 0.075 0.925 38 H 0.132 0.868 39 H 0.115 0.885 40 H 0.271 0.729 41 H 0.254 0.746 42 H 0.101 0.899 43 H 0.054 0.946 44 H 0.068 0.932 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.095 0.905 48 H 0.104 0.896 49 H 0.072 0.928 50 H 0.057 0.943 51 H 0.092 0.908 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.433 14.447 -20.815 27.797 hybrid contribution -0.822 0.803 1.148 1.625 sum 10.611 15.251 -19.667 27.054 Atomic orbital electron populations 1.23948 0.95005 1.02809 1.00932 1.22831 0.96174 0.98318 0.99472 1.21303 0.94000 0.95029 0.94224 1.61388 1.15551 1.46770 1.02530 1.19957 0.93679 0.95140 0.86094 1.21227 0.99662 1.42665 0.91519 0.94649 1.25802 1.02154 0.95018 0.95760 1.70054 1.38913 1.49079 1.00837 0.85765 0.79718 0.79668 0.78095 1.19877 1.20789 1.16593 1.21952 0.94981 0.95091 0.96061 1.21318 0.80223 0.82448 0.85299 1.90773 1.68268 1.25281 1.52641 1.43946 1.31491 1.27672 1.31214 1.16389 0.80374 0.83518 0.80522 1.91033 1.72370 1.27864 1.55107 1.45168 1.31705 1.25756 1.34228 1.20997 0.89524 0.99503 0.83933 0.92663 1.21895 0.98221 1.01857 0.94502 1.21505 0.96283 1.00418 0.97347 1.21553 0.95231 1.00803 0.97738 1.21579 0.98802 1.01263 0.93320 1.21363 0.91938 1.01216 0.96035 0.88276 1.21856 1.01315 1.00697 0.96821 0.87173 0.87416 0.89054 0.93581 0.90499 0.97537 0.95196 0.92513 0.86763 0.88461 0.72901 0.74561 0.89929 0.94559 0.93202 0.91043 0.90954 0.90529 0.89647 0.92811 0.94286 0.90781 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.75 14.32 67.78 0.97 -4.78 16 2 C -0.15 -5.51 8.76 25.65 0.22 -5.28 16 3 C 0.08 3.00 4.96 85.56 0.42 3.42 16 4 N -0.54 -22.59 4.10 -909.93 -3.73 -26.32 16 5 C 0.18 8.20 3.66 85.56 0.31 8.51 16 6 C -0.51 -28.91 9.21 25.60 0.24 -28.67 16 7 H 0.04 2.26 7.98 -2.91 -0.02 2.23 16 8 C 0.01 0.57 5.47 84.65 0.46 1.03 16 9 N -0.95 -58.47 13.96 21.45 0.30 -58.17 16 10 Si 0.94 42.81 27.37 68.60 1.88 44.69 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 12 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 13 H -0.24 -9.92 6.68 99.48 0.67 -9.26 16 14 C 0.05 1.68 5.26 85.56 0.45 2.13 16 15 C 0.52 17.93 7.33 87.66 0.64 18.58 16 16 O -0.50 -22.67 12.88 19.88 0.26 -22.41 16 17 N -0.67 -16.55 5.24 -440.54 -2.31 -18.86 16 18 C 0.69 19.48 8.47 179.06 1.52 21.00 16 19 O -0.59 -23.92 14.41 18.92 0.27 -23.64 16 20 N -0.71 -12.36 4.39 -457.87 -2.01 -14.37 16 21 C 0.17 2.89 1.90 44.99 0.09 2.97 16 22 H 0.06 1.38 7.58 -2.39 -0.02 1.37 16 23 C -0.13 -2.11 5.49 30.59 0.17 -1.94 16 24 C -0.12 -1.61 5.92 30.60 0.18 -1.43 16 25 C -0.12 -1.06 5.92 30.60 0.18 -0.88 16 26 C -0.11 -1.08 5.20 30.58 0.16 -0.92 16 27 C -0.09 -0.92 2.29 -10.81 -0.02 -0.94 16 28 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 29 C -0.15 -1.77 9.04 71.98 0.65 -1.12 16 30 H 0.11 2.95 8.06 -2.91 -0.02 2.93 16 31 H 0.11 2.86 7.84 -2.91 -0.02 2.84 16 32 H 0.09 3.71 8.06 -2.91 -0.02 3.68 16 33 H 0.05 1.49 7.70 -2.39 -0.02 1.47 16 34 H 0.08 2.94 5.81 -2.39 -0.01 2.92 16 35 H 0.01 0.30 7.37 -2.39 -0.02 0.28 16 36 H 0.03 1.40 6.28 -2.38 -0.01 1.39 16 37 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 38 H 0.11 4.00 7.44 -2.39 -0.02 3.98 16 39 H 0.10 2.47 8.12 -2.39 -0.02 2.45 16 40 H 0.43 5.86 8.71 -92.71 -0.81 5.05 16 41 H 0.42 3.81 8.40 -92.71 -0.78 3.03 16 42 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 52 H 0.06 0.68 7.44 -2.39 -0.02 0.66 16 Total: -1.00 -84.14 411.11 0.58 -83.56 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: -0.72 Total: 23.85 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 6.64 Total: 11.68 kcal Atomic # 7 Polarization: -109.98 SS G_CDS: -7.75 Total: -117.73 kcal Atomic # 8 Polarization: -46.59 SS G_CDS: 0.53 Total: -46.06 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.88 Total: 44.69 kcal Total: -84.14 0.58 -83.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428863761.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.673 kcal (2) G-P(sol) polarization free energy of solvation -84.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds