Wall clock time and date at job start Tue Mar 31 2020 21:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 110.01285 * 2 1 4 4 C 1.54261 * 110.03368 * 238.61092 * 2 1 3 5 5 C 1.54890 * 104.19818 * 217.05429 * 4 2 1 6 6 C 1.54890 * 102.74416 * 37.94210 * 5 4 2 7 7 H 1.08999 * 110.49134 * 80.87277 * 6 5 4 8 8 N 1.46901 * 110.48170 * 203.38272 * 6 5 4 9 9 C 1.46905 * 110.99957 * 191.39170 * 8 6 5 10 10 C 1.53004 * 109.47064 * 72.02483 * 9 8 6 11 11 O 1.42896 * 109.47169 * 63.87991 * 10 9 8 12 12 C 1.46896 * 111.00726 * 67.43628 * 8 6 5 13 13 C 1.50694 * 109.47718 * 199.96319 * 12 8 6 14 14 O 1.21288 * 119.99724 * 359.97438 * 13 12 8 15 15 N 1.34770 * 120.00245 * 179.97438 * 13 12 8 16 16 C 1.46510 * 120.00222 * 179.97438 * 15 13 12 17 17 C 1.50695 * 109.46683 * 89.99976 * 16 15 13 18 18 H 1.08007 * 120.00326 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99969 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00138 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99864 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47264 * 89.99750 * 21 19 17 23 23 H 1.48506 * 109.47420 * 209.99988 * 21 19 17 24 24 H 1.48503 * 109.47095 * 329.99966 * 21 19 17 25 25 C 1.46506 * 120.00091 * 359.97438 * 15 13 12 26 26 C 1.53004 * 109.46735 * 89.99893 * 25 15 13 27 27 C 1.47204 * 109.46543 * 179.97438 * 26 25 15 28 28 N 6.55897 * 123.29474 * 41.43670 * 2 1 3 29 29 C 1.54081 * 109.97069 * 121.45009 * 2 1 3 30 30 H 1.08996 * 109.47170 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47045 * 299.93650 * 1 2 3 32 32 H 1.08998 * 109.47065 * 59.93620 * 1 2 3 33 33 H 1.09003 * 110.49029 * 98.37209 * 4 2 1 34 34 H 1.09007 * 110.59690 * 335.78728 * 4 2 1 35 35 H 1.08991 * 110.75514 * 279.62911 * 5 4 2 36 36 H 1.09004 * 110.91255 * 156.32549 * 5 4 2 37 37 H 1.08999 * 109.47175 * 192.02432 * 9 8 6 38 38 H 1.09001 * 109.47047 * 312.02895 * 9 8 6 39 39 H 1.09003 * 109.47219 * 183.88432 * 10 9 8 40 40 H 1.09001 * 109.46989 * 303.87894 * 10 9 8 41 41 H 0.96699 * 113.99930 * 179.97438 * 11 10 9 42 42 H 1.09006 * 109.46716 * 319.96290 * 12 8 6 43 43 H 1.09002 * 109.46912 * 79.96004 * 12 8 6 44 44 H 1.08993 * 109.47182 * 209.99819 * 16 15 13 45 45 H 1.08996 * 109.46985 * 330.00426 * 16 15 13 46 46 H 0.97000 * 119.99933 * 179.97438 * 20 19 17 47 47 H 1.08990 * 109.47069 * 209.99728 * 25 15 13 48 48 H 1.09002 * 109.46705 * 330.00207 * 25 15 13 49 49 H 1.08998 * 109.46884 * 299.99879 * 26 25 15 50 50 H 1.09002 * 109.47268 * 60.00658 * 26 25 15 51 51 H 1.08993 * 110.16246 * 0.14355 * 29 2 1 52 52 H 1.09003 * 110.00700 * 238.64634 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7548 -1.2372 5 6 3.3145 -1.4993 -0.7201 6 6 2.8891 -1.9398 0.7026 7 1 2.2814 -2.8435 0.6566 8 7 4.0706 -2.1587 1.5477 9 6 3.7037 -2.8298 2.8019 10 6 3.3492 -4.2901 2.5143 11 8 4.5032 -4.9716 2.0183 12 6 4.7704 -0.8946 1.8122 13 6 6.1871 -1.1838 2.2367 14 8 6.5755 -2.3304 2.3119 15 7 7.0225 -0.1686 2.5327 16 6 8.3997 -0.4498 2.9459 17 6 9.2896 -0.4943 1.7305 18 1 8.8712 -0.3292 0.7485 19 6 10.6378 -0.7459 1.8721 20 7 11.4145 -0.7842 0.8114 21 14 11.3612 -1.0322 3.5703 22 1 11.3102 -2.4809 3.8923 23 1 12.7722 -0.5697 3.5918 24 1 10.5763 -0.2734 4.5770 25 6 6.5536 1.2164 2.4413 26 6 5.9662 1.6457 3.7872 27 6 5.4956 3.0375 3.6955 28 7 5.1305 4.1101 3.6282 29 6 2.0562 -0.7556 1.2354 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5129 0.8906 32 1 -0.3633 0.5148 -0.8894 33 1 2.3288 -0.0527 -2.0259 34 1 1.3155 -1.4658 -1.5989 35 1 4.1712 -0.8271 -0.6764 36 1 3.5367 -2.3661 -1.3426 37 1 4.5441 -2.7896 3.4948 38 1 2.8434 -2.3276 3.2445 39 1 3.0109 -4.7697 3.4328 40 1 2.5547 -4.3312 1.7691 41 1 4.3516 -5.9046 1.8144 42 1 4.7791 -0.2878 0.9067 43 1 4.2562 -0.3541 2.6069 44 1 8.7442 0.3345 3.6198 45 1 8.4362 -1.4112 3.4582 46 1 12.3630 -0.9608 0.9111 47 1 7.3898 1.8670 2.1857 48 1 5.7868 1.2901 1.6700 49 1 5.1299 0.9950 4.0428 50 1 6.7329 1.5720 4.5584 51 1 1.2229 -1.1243 1.8334 52 1 2.6845 -0.0973 1.8355 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429773392.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:06 Heat of formation + Delta-G solvation = -48.076021 kcal Electronic energy + Delta-G solvation = -31075.438829 eV Core-core repulsion = 27075.421979 eV Total energy + Delta-G solvation = -4000.016851 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.13976 -38.72975 -36.99549 -36.76570 -35.39228 -34.91071 -32.74840 -30.99710 -30.89728 -29.87240 -28.66630 -27.68184 -25.98661 -24.55900 -23.96839 -22.25929 -21.87150 -20.28678 -19.32461 -18.32682 -17.77347 -17.30855 -16.95185 -16.76303 -16.22239 -15.68526 -15.30303 -15.06680 -14.74273 -14.59897 -14.22381 -13.92288 -13.79626 -13.64244 -13.41399 -13.34199 -13.09523 -12.92217 -12.81111 -12.51053 -12.47148 -12.32158 -12.12804 -12.03127 -11.73292 -11.54057 -11.47602 -11.16806 -11.05648 -10.94961 -10.91502 -10.85209 -10.79654 -10.55926 -10.51874 -10.39505 -10.14643 -9.76438 -9.51222 -8.93486 -8.55842 -8.05802 -7.77219 -6.05318 -4.03996 2.68525 2.75982 3.30455 3.34664 3.37247 3.39140 3.49188 3.87178 4.22078 4.40105 4.41880 4.43365 4.51137 4.65394 4.90982 4.99682 5.01662 5.09275 5.13248 5.20129 5.22091 5.26291 5.28152 5.30719 5.37129 5.39433 5.42548 5.46469 5.47261 5.55953 5.65044 5.70332 5.70470 5.76344 5.78308 5.92855 5.95646 5.99309 6.05027 6.14011 6.20414 6.29918 6.64487 6.92437 7.07243 7.20244 7.33015 7.51855 7.63555 7.90762 8.21997 8.50103 8.98461 9.06472 9.54822 11.08185 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009534 B = 0.003921 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2936.155710 B = 7139.228061 C = 8598.912858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.070 0.930 4 C -0.121 4.121 5 C -0.116 4.116 6 C 0.081 3.919 7 H 0.087 0.913 8 N -0.498 5.498 9 C 0.056 3.944 10 C 0.086 3.914 11 O -0.540 6.540 12 C 0.033 3.967 13 C 0.505 3.495 14 O -0.496 6.496 15 N -0.599 5.599 16 C 0.217 3.783 17 C -0.528 4.528 18 H 0.075 0.925 19 C 0.073 3.927 20 N -0.897 5.897 21 Si 0.875 3.125 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.266 1.266 25 C 0.119 3.881 26 C -0.051 4.051 27 C 0.216 3.784 28 N -0.443 5.443 29 C -0.160 4.160 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.042 0.958 39 H 0.040 0.960 40 H 0.037 0.963 41 H 0.365 0.635 42 H 0.101 0.899 43 H 0.057 0.943 44 H 0.029 0.971 45 H 0.038 0.962 46 H 0.264 0.736 47 H 0.095 0.905 48 H 0.075 0.925 49 H 0.104 0.896 50 H 0.115 0.885 51 H 0.063 0.937 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.543 -1.311 2.752 22.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.089 0.911 4 C -0.159 4.159 5 C -0.154 4.154 6 C -0.028 4.028 7 H 0.105 0.895 8 N -0.220 5.220 9 C -0.071 4.071 10 C 0.008 3.992 11 O -0.342 6.342 12 C -0.098 4.098 13 C 0.290 3.710 14 O -0.368 6.368 15 N -0.332 5.332 16 C 0.097 3.903 17 C -0.566 4.566 18 H 0.093 0.907 19 C -0.130 4.130 20 N -0.536 5.536 21 Si 0.702 3.298 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.191 1.191 25 C -0.008 4.008 26 C -0.093 4.093 27 C -0.102 4.102 28 N -0.120 5.120 29 C -0.200 4.200 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.210 0.790 42 H 0.119 0.881 43 H 0.075 0.925 44 H 0.047 0.953 45 H 0.056 0.944 46 H 0.074 0.926 47 H 0.114 0.886 48 H 0.094 0.906 49 H 0.122 0.878 50 H 0.133 0.867 51 H 0.082 0.918 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.060 -0.120 2.481 22.199 hybrid contribution -0.195 -0.446 1.193 1.289 sum -22.255 -0.566 3.675 22.563 Atomic orbital electron populations 1.21878 0.95255 1.01562 1.01378 1.21698 0.95421 0.99387 0.94755 0.91146 1.22443 0.97434 0.98955 0.97041 1.22550 0.97414 1.00375 0.95022 1.22697 0.89813 0.96900 0.93391 0.89514 1.61591 1.22948 1.21072 1.16370 1.22154 1.00224 0.92911 0.91840 1.22070 0.88067 0.92665 0.96417 1.86861 1.34365 1.25833 1.87179 1.22146 0.93593 0.92350 1.01734 1.20284 0.86626 0.85621 0.78491 1.90760 1.76527 1.20081 1.49470 1.47906 1.13459 1.03906 1.67945 1.19660 0.77324 0.96874 0.96434 1.21329 0.92232 1.49150 0.93897 0.90670 1.24854 0.96963 0.94606 0.96549 1.69897 1.05410 1.49413 1.28838 0.86881 0.78588 0.79310 0.85038 1.19927 1.21234 1.19061 1.21282 1.00539 0.85444 0.93512 1.19925 1.02669 0.84002 1.02698 1.29043 0.93085 0.94907 0.93177 1.81171 1.09726 1.12501 1.08634 1.23074 1.00212 0.98563 0.98117 0.92731 0.92991 0.92841 0.91590 0.91615 0.90822 0.90914 0.89295 0.93988 0.94206 0.94451 0.79011 0.88094 0.92520 0.95269 0.94381 0.92617 0.88622 0.90637 0.87779 0.86667 0.91841 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.84 37.16 0.33 -0.69 16 2 C -0.09 -0.77 3.51 -89.40 -0.31 -1.08 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.12 -1.04 6.36 -25.07 -0.16 -1.20 16 5 C -0.12 -1.25 6.37 -24.74 -0.16 -1.41 16 6 C 0.08 0.85 2.77 -66.05 -0.18 0.67 16 7 H 0.09 0.88 6.35 -51.93 -0.33 0.55 16 8 N -0.50 -6.68 3.93 -226.09 -0.89 -7.57 16 9 C 0.06 0.70 4.85 -3.82 -0.02 0.68 16 10 C 0.09 0.97 7.19 37.16 0.27 1.24 16 11 O -0.54 -7.84 13.59 -35.23 -0.48 -8.31 16 12 C 0.03 0.44 2.61 -4.98 -0.01 0.42 16 13 C 0.50 9.31 7.28 -10.99 -0.08 9.23 16 14 O -0.50 -11.65 14.92 5.55 0.08 -11.56 16 15 N -0.60 -10.76 2.46 -175.06 -0.43 -11.19 16 16 C 0.22 4.88 4.23 -5.19 -0.02 4.86 16 17 C -0.53 -14.57 9.94 -34.44 -0.34 -14.91 16 18 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 19 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 20 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 21 Si 0.87 21.04 27.47 -169.99 -4.67 16.37 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.27 -5.88 6.54 56.52 0.37 -5.51 16 25 C 0.12 1.56 5.17 -4.04 -0.02 1.54 16 26 C -0.05 -0.51 6.03 -29.51 -0.18 -0.68 16 27 C 0.22 2.50 15.43 -20.79 -0.32 2.18 16 28 N -0.44 -6.32 18.53 42.11 0.78 -5.54 16 29 C -0.16 -1.40 5.21 -25.50 -0.13 -1.53 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.36 8.14 -51.92 -0.42 -0.07 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.52 7.86 -51.92 -0.41 0.11 16 35 H 0.07 0.90 6.19 -51.93 -0.32 0.57 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 1.34 6.76 -51.93 -0.35 0.99 16 38 H 0.04 0.41 7.49 -51.93 -0.39 0.02 16 39 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.04 0.36 6.48 -51.93 -0.34 0.03 16 41 H 0.37 3.47 9.12 45.56 0.42 3.89 16 42 H 0.10 1.28 5.23 -51.93 -0.27 1.01 16 43 H 0.06 0.60 5.73 -51.93 -0.30 0.30 16 44 H 0.03 0.61 7.13 -51.93 -0.37 0.24 16 45 H 0.04 0.93 6.85 -51.93 -0.36 0.57 16 46 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 47 H 0.10 1.36 8.07 -51.93 -0.42 0.94 16 48 H 0.08 0.84 6.44 -51.93 -0.33 0.51 16 49 H 0.10 0.82 7.22 -51.93 -0.37 0.44 16 50 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 51 H 0.06 0.51 7.68 -51.93 -0.40 0.11 16 52 H 0.07 0.62 5.46 -51.93 -0.28 0.34 16 LS Contribution 408.40 15.07 6.15 6.15 Total: -1.00 -36.42 408.40 -7.91 -44.33 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -7.80 Total: 2.62 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -1.44 Total: 1.30 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: 0.24 Total: -50.90 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.40 Total: -19.88 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.42 -7.91 -44.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429773392.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.743 kcal (2) G-P(sol) polarization free energy of solvation -36.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds