Wall clock time and date at job start Tue Mar 31 2020 21:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 110.01285 * 2 1 4 4 C 1.54261 * 110.03368 * 238.61092 * 2 1 3 5 5 C 1.54890 * 104.19818 * 217.05429 * 4 2 1 6 6 C 1.54890 * 102.74416 * 37.94210 * 5 4 2 7 7 H 1.08999 * 110.49134 * 80.87277 * 6 5 4 8 8 N 1.46901 * 110.48170 * 203.38272 * 6 5 4 9 9 C 1.46905 * 110.99957 * 191.39170 * 8 6 5 10 10 C 1.53004 * 109.47064 * 72.02483 * 9 8 6 11 11 O 1.42896 * 109.47169 * 63.87991 * 10 9 8 12 12 C 1.46896 * 111.00726 * 67.43628 * 8 6 5 13 13 C 1.50694 * 109.47718 * 199.96319 * 12 8 6 14 14 O 1.21288 * 119.99724 * 359.97438 * 13 12 8 15 15 N 1.34770 * 120.00245 * 179.97438 * 13 12 8 16 16 C 1.46510 * 120.00222 * 179.97438 * 15 13 12 17 17 C 1.50695 * 109.46683 * 89.99976 * 16 15 13 18 18 H 1.08007 * 120.00326 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99969 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00138 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99864 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47264 * 89.99750 * 21 19 17 23 23 H 1.48506 * 109.47420 * 209.99988 * 21 19 17 24 24 H 1.48503 * 109.47095 * 329.99966 * 21 19 17 25 25 C 1.46506 * 120.00091 * 359.97438 * 15 13 12 26 26 C 1.53004 * 109.46735 * 89.99893 * 25 15 13 27 27 C 1.47204 * 109.46543 * 179.97438 * 26 25 15 28 28 N 6.55897 * 123.29474 * 41.43670 * 2 1 3 29 29 C 1.54081 * 109.97069 * 121.45009 * 2 1 3 30 30 H 1.08996 * 109.47170 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47045 * 299.93650 * 1 2 3 32 32 H 1.08998 * 109.47065 * 59.93620 * 1 2 3 33 33 H 1.09003 * 110.49029 * 98.37209 * 4 2 1 34 34 H 1.09007 * 110.59690 * 335.78728 * 4 2 1 35 35 H 1.08991 * 110.75514 * 279.62911 * 5 4 2 36 36 H 1.09004 * 110.91255 * 156.32549 * 5 4 2 37 37 H 1.08999 * 109.47175 * 192.02432 * 9 8 6 38 38 H 1.09001 * 109.47047 * 312.02895 * 9 8 6 39 39 H 1.09003 * 109.47219 * 183.88432 * 10 9 8 40 40 H 1.09001 * 109.46989 * 303.87894 * 10 9 8 41 41 H 0.96699 * 113.99930 * 179.97438 * 11 10 9 42 42 H 1.09006 * 109.46716 * 319.96290 * 12 8 6 43 43 H 1.09002 * 109.46912 * 79.96004 * 12 8 6 44 44 H 1.08993 * 109.47182 * 209.99819 * 16 15 13 45 45 H 1.08996 * 109.46985 * 330.00426 * 16 15 13 46 46 H 0.97000 * 119.99933 * 179.97438 * 20 19 17 47 47 H 1.08990 * 109.47069 * 209.99728 * 25 15 13 48 48 H 1.09002 * 109.46705 * 330.00207 * 25 15 13 49 49 H 1.08998 * 109.46884 * 299.99879 * 26 25 15 50 50 H 1.09002 * 109.47268 * 60.00658 * 26 25 15 51 51 H 1.08993 * 110.16246 * 0.14355 * 29 2 1 52 52 H 1.09003 * 110.00700 * 238.64634 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7548 -1.2372 5 6 3.3145 -1.4993 -0.7201 6 6 2.8891 -1.9398 0.7026 7 1 2.2814 -2.8435 0.6566 8 7 4.0706 -2.1587 1.5477 9 6 3.7037 -2.8298 2.8019 10 6 3.3492 -4.2901 2.5143 11 8 4.5032 -4.9716 2.0183 12 6 4.7704 -0.8946 1.8122 13 6 6.1871 -1.1838 2.2367 14 8 6.5755 -2.3304 2.3119 15 7 7.0225 -0.1686 2.5327 16 6 8.3997 -0.4498 2.9459 17 6 9.2896 -0.4943 1.7305 18 1 8.8712 -0.3292 0.7485 19 6 10.6378 -0.7459 1.8721 20 7 11.4145 -0.7842 0.8114 21 14 11.3612 -1.0322 3.5703 22 1 11.3102 -2.4809 3.8923 23 1 12.7722 -0.5697 3.5918 24 1 10.5763 -0.2734 4.5770 25 6 6.5536 1.2164 2.4413 26 6 5.9662 1.6457 3.7872 27 6 5.4956 3.0375 3.6955 28 7 5.1305 4.1101 3.6282 29 6 2.0562 -0.7556 1.2354 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5129 0.8906 32 1 -0.3633 0.5148 -0.8894 33 1 2.3288 -0.0527 -2.0259 34 1 1.3155 -1.4658 -1.5989 35 1 4.1712 -0.8271 -0.6764 36 1 3.5367 -2.3661 -1.3426 37 1 4.5441 -2.7896 3.4948 38 1 2.8434 -2.3276 3.2445 39 1 3.0109 -4.7697 3.4328 40 1 2.5547 -4.3312 1.7691 41 1 4.3516 -5.9046 1.8144 42 1 4.7791 -0.2878 0.9067 43 1 4.2562 -0.3541 2.6069 44 1 8.7442 0.3345 3.6198 45 1 8.4362 -1.4112 3.4582 46 1 12.3630 -0.9608 0.9111 47 1 7.3898 1.8670 2.1857 48 1 5.7868 1.2901 1.6700 49 1 5.1299 0.9950 4.0428 50 1 6.7329 1.5720 4.5584 51 1 1.2229 -1.1243 1.8334 52 1 2.6845 -0.0973 1.8355 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429773392.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:05 Heat of formation + Delta-G solvation = -75.424219 kcal Electronic energy + Delta-G solvation = -31076.624736 eV Core-core repulsion = 27075.421979 eV Total energy + Delta-G solvation = -4001.202758 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.22071 -39.88175 -38.00875 -37.73230 -36.66621 -35.98857 -34.76558 -32.33336 -31.65273 -31.02971 -29.74395 -28.94406 -26.96877 -25.41809 -25.19087 -23.93578 -22.74932 -21.08743 -20.33775 -19.45210 -19.13310 -18.56954 -18.27673 -18.04064 -17.31116 -16.69236 -16.63137 -16.08993 -15.94208 -15.68900 -15.53063 -15.01635 -14.88788 -14.60623 -14.41558 -14.27689 -14.20905 -14.02700 -13.85616 -13.81773 -13.63011 -13.52061 -13.31488 -13.08684 -12.93127 -12.66229 -12.65260 -12.38392 -12.31392 -12.02595 -11.94560 -11.88776 -11.78244 -11.65566 -11.58696 -11.52962 -11.30587 -11.19441 -10.74952 -10.67910 -10.40561 -9.36377 -8.96385 -8.25504 -6.29433 1.38401 1.43697 1.50432 1.71433 1.85470 1.97363 2.27290 2.38218 2.93531 3.10236 3.20567 3.59473 3.67703 3.76994 3.86662 3.97865 4.04510 4.09980 4.18228 4.31747 4.35614 4.42196 4.49204 4.55117 4.56919 4.60203 4.65389 4.69714 4.70812 4.76026 4.82834 4.84206 4.90879 4.98268 5.04878 5.06156 5.08396 5.12016 5.16934 5.24967 5.33192 5.38312 5.45366 5.56630 5.61148 5.70831 6.10800 6.33323 6.35409 6.61444 6.73629 6.81959 7.14524 7.31971 7.64014 8.91809 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009534 B = 0.003921 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2936.155710 B = 7139.228061 C = 8598.912858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 H 0.068 0.932 4 C -0.114 4.114 5 C -0.121 4.121 6 C 0.085 3.915 7 H 0.093 0.907 8 N -0.527 5.527 9 C 0.056 3.944 10 C 0.082 3.918 11 O -0.580 6.580 12 C 0.046 3.954 13 C 0.498 3.502 14 O -0.556 6.556 15 N -0.600 5.600 16 C 0.226 3.774 17 C -0.530 4.530 18 H 0.026 0.974 19 C 0.007 3.993 20 N -0.951 5.951 21 Si 0.945 3.055 22 H -0.280 1.280 23 H -0.283 1.283 24 H -0.227 1.227 25 C 0.113 3.887 26 C -0.037 4.037 27 C 0.245 3.755 28 N -0.488 5.488 29 C -0.153 4.153 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.382 0.618 42 H 0.107 0.893 43 H 0.096 0.904 44 H 0.058 0.942 45 H 0.021 0.979 46 H 0.265 0.735 47 H 0.082 0.918 48 H 0.097 0.903 49 H 0.136 0.864 50 H 0.129 0.871 51 H 0.078 0.922 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.337 -0.480 5.085 25.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.152 4.152 5 C -0.159 4.159 6 C -0.023 4.023 7 H 0.111 0.889 8 N -0.250 5.250 9 C -0.071 4.071 10 C 0.004 3.996 11 O -0.386 6.386 12 C -0.085 4.085 13 C 0.286 3.714 14 O -0.432 6.432 15 N -0.333 5.333 16 C 0.104 3.896 17 C -0.569 4.569 18 H 0.045 0.955 19 C -0.190 4.190 20 N -0.592 5.592 21 Si 0.768 3.232 22 H -0.206 1.206 23 H -0.208 1.208 24 H -0.149 1.149 25 C -0.012 4.012 26 C -0.078 4.078 27 C -0.073 4.073 28 N -0.166 5.166 29 C -0.192 4.192 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.229 0.771 42 H 0.125 0.875 43 H 0.113 0.887 44 H 0.076 0.924 45 H 0.039 0.961 46 H 0.074 0.926 47 H 0.101 0.899 48 H 0.115 0.885 49 H 0.154 0.846 50 H 0.147 0.853 51 H 0.097 0.903 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -24.915 0.758 4.818 25.388 hybrid contribution 0.659 -0.760 0.308 1.052 sum -24.256 -0.002 5.126 24.791 Atomic orbital electron populations 1.21851 0.94148 1.01992 1.01796 1.21684 0.96291 0.99036 0.94068 0.91306 1.22402 0.96424 0.98946 0.97425 1.22548 0.97916 0.99702 0.95703 1.22689 0.89076 0.98103 0.92412 0.88906 1.61474 1.24671 1.21360 1.17522 1.22187 1.00086 0.93935 0.90933 1.22262 0.87443 0.92036 0.97818 1.86809 1.36638 1.27545 1.87627 1.22042 0.90404 0.93027 1.02978 1.21260 0.88484 0.84696 0.76974 1.90729 1.78016 1.22514 1.51947 1.47876 1.11811 1.06068 1.67542 1.19323 0.79078 0.96954 0.94259 1.21648 0.93202 1.48137 0.93930 0.95544 1.25870 0.97550 0.94374 1.01217 1.70073 1.05848 1.51449 1.31806 0.85758 0.78120 0.79108 0.80199 1.20618 1.20842 1.14908 1.21477 1.00873 0.82430 0.96382 1.19856 1.04008 0.83268 1.00673 1.29121 0.91723 0.94647 0.91794 1.81218 1.11512 1.13907 1.09988 1.23013 1.00281 0.97572 0.98326 0.92289 0.92454 0.92613 0.91599 0.90712 0.92670 0.92440 0.92452 0.90758 0.92069 0.92704 0.77121 0.87508 0.88695 0.92385 0.96074 0.92607 0.89939 0.88526 0.84649 0.85346 0.90345 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.84 71.98 0.64 -0.90 16 2 C -0.09 -1.24 3.51 -10.00 -0.04 -1.27 16 3 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 4 C -0.11 -1.77 6.36 31.67 0.20 -1.56 16 5 C -0.12 -2.54 6.37 31.89 0.20 -2.34 16 6 C 0.09 1.62 2.77 45.99 0.13 1.75 16 7 H 0.09 1.66 6.35 -2.39 -0.02 1.64 16 8 N -0.53 -13.49 3.93 -869.23 -3.41 -16.90 16 9 C 0.06 1.29 4.85 86.30 0.42 1.70 16 10 C 0.08 1.73 7.19 71.98 0.52 2.24 16 11 O -0.58 -16.96 13.59 -148.98 -2.02 -18.98 16 12 C 0.05 1.15 2.61 85.56 0.22 1.37 16 13 C 0.50 18.30 7.28 87.66 0.64 18.94 16 14 O -0.56 -26.88 14.92 -3.06 -0.05 -26.93 16 15 N -0.60 -21.13 2.46 -826.15 -2.03 -23.16 16 16 C 0.23 10.06 4.23 85.63 0.36 10.42 16 17 C -0.53 -30.26 9.94 25.60 0.25 -30.00 16 18 H 0.03 1.71 8.06 -2.91 -0.02 1.68 16 19 C 0.01 0.41 5.47 84.65 0.46 0.87 16 20 N -0.95 -60.38 13.96 21.45 0.30 -60.08 16 21 Si 0.95 43.48 27.47 68.60 1.88 45.36 16 22 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 24 H -0.23 -8.90 6.54 99.48 0.65 -8.25 16 25 C 0.11 2.73 5.17 86.38 0.45 3.18 16 26 C -0.04 -0.59 6.03 28.79 0.17 -0.42 16 27 C 0.24 4.92 15.43 89.45 1.38 6.30 16 28 N -0.49 -12.88 18.53 19.99 0.37 -12.51 16 29 C -0.15 -2.12 5.21 31.39 0.16 -1.96 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 1.03 7.86 -2.38 -0.02 1.01 16 35 H 0.05 1.35 6.19 -2.39 -0.01 1.33 16 36 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.06 1.69 6.76 -2.39 -0.02 1.67 16 38 H 0.07 1.17 7.49 -2.39 -0.02 1.15 16 39 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.05 0.94 6.48 -2.39 -0.02 0.92 16 41 H 0.38 7.33 9.12 -74.06 -0.68 6.65 16 42 H 0.11 2.55 5.23 -2.38 -0.01 2.54 16 43 H 0.10 1.62 5.73 -2.39 -0.01 1.61 16 44 H 0.06 2.26 7.13 -2.39 -0.02 2.24 16 45 H 0.02 1.03 6.85 -2.39 -0.02 1.01 16 46 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 47 H 0.08 2.24 8.07 -2.39 -0.02 2.22 16 48 H 0.10 1.93 6.44 -2.39 -0.02 1.91 16 49 H 0.14 1.42 7.22 -2.39 -0.02 1.41 16 50 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 51 H 0.08 0.90 7.68 -2.39 -0.02 0.88 16 52 H 0.07 0.98 5.46 -2.39 -0.01 0.96 16 Total: -1.00 -85.36 408.40 1.41 -83.94 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.20 Total: 20.92 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 6.17 Total: 8.33 kcal Atomic # 7 Polarization: -107.88 SS G_CDS: -4.77 Total: -112.66 kcal Atomic # 8 Polarization: -43.84 SS G_CDS: -2.07 Total: -45.91 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.88 Total: 45.36 kcal Total: -85.36 1.41 -83.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429773392.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.518 kcal (2) G-P(sol) polarization free energy of solvation -85.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds