Wall clock time and date at job start Tue Mar 31 2020 21:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09008 * 109.47019 * 2 1 4 4 N 1.46502 * 109.47133 * 119.99660 * 2 1 3 5 5 C 1.34781 * 120.00105 * 275.00010 * 4 2 1 6 6 O 1.21584 * 119.99916 * 0.02562 * 5 4 2 7 7 N 1.34773 * 120.00007 * 180.02562 * 5 4 2 8 8 C 1.46495 * 119.99816 * 180.02562 * 7 5 4 9 9 C 1.53010 * 109.46995 * 175.88385 * 8 7 5 10 10 C 1.50699 * 115.55030 * 36.59233 * 9 8 7 11 11 H 1.08001 * 120.00114 * 268.83796 * 10 9 8 12 12 C 1.37873 * 119.99798 * 88.83010 * 10 9 8 13 13 N 1.31513 * 120.00410 * 3.24326 * 12 10 9 14 14 Si 1.86806 * 119.99920 * 183.23895 * 12 10 9 15 15 H 1.48496 * 109.46878 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.46772 * 120.00234 * 14 12 10 17 17 H 1.48501 * 109.47135 * 240.00496 * 14 12 10 18 18 C 1.53000 * 117.49600 * 250.88571 * 9 8 7 19 19 C 1.52995 * 60.00004 * 252.50963 * 18 9 8 20 20 C 1.50697 * 109.47233 * 239.99856 * 2 1 3 21 21 O 1.21272 * 120.00033 * 255.99427 * 20 2 1 22 22 N 1.34777 * 119.99916 * 75.99834 * 20 2 1 23 23 C 1.46927 * 120.63149 * 353.89445 * 22 20 2 24 24 C 1.53190 * 108.77920 * 126.41662 * 23 22 20 25 25 C 1.53039 * 109.31281 * 54.62873 * 24 23 22 26 26 C 1.53041 * 109.54153 * 298.63771 * 25 24 23 27 27 C 1.46925 * 120.62943 * 173.91417 * 22 20 2 28 28 H 1.09001 * 109.58669 * 113.80205 * 27 22 20 29 29 C 1.52992 * 109.58839 * 353.37297 * 27 22 20 30 30 H 1.08996 * 109.47131 * 64.04222 * 1 2 3 31 31 H 1.08995 * 109.47046 * 184.04618 * 1 2 3 32 32 H 1.09002 * 109.46759 * 304.04334 * 1 2 3 33 33 H 0.96997 * 119.99517 * 95.00152 * 4 2 1 34 34 H 0.96998 * 119.99826 * 359.97438 * 7 5 4 35 35 H 1.08999 * 109.47453 * 295.87843 * 8 7 5 36 36 H 1.08995 * 109.47671 * 55.88581 * 8 7 5 37 37 H 0.96995 * 120.00196 * 185.00197 * 13 12 10 38 38 H 1.08999 * 117.50216 * 359.97438 * 18 9 8 39 39 H 1.09000 * 117.49773 * 145.02145 * 18 9 8 40 40 H 1.08998 * 117.50310 * 252.51517 * 19 18 9 41 41 H 1.09006 * 117.51881 * 107.48357 * 19 18 9 42 42 H 1.08994 * 109.58602 * 6.62252 * 23 22 20 43 43 H 1.09006 * 109.58335 * 246.19913 * 23 22 20 44 44 H 1.09003 * 109.49113 * 294.68232 * 24 23 22 45 45 H 1.08999 * 109.52411 * 174.60430 * 24 23 22 46 46 H 1.08998 * 109.45865 * 178.61787 * 25 24 23 47 47 H 1.08997 * 109.45883 * 58.66195 * 25 24 23 48 48 H 1.09000 * 109.49441 * 181.31576 * 26 25 24 49 49 H 1.08994 * 109.49549 * 301.41324 * 26 25 24 50 50 H 1.08998 * 109.47657 * 308.35575 * 29 27 22 51 51 H 1.09006 * 109.47021 * 68.35357 * 29 27 22 52 52 H 1.09002 * 109.47399 * 188.35184 * 29 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1471 -0.0181 2.3572 6 8 1.8575 1.1614 2.4118 7 7 2.5969 -0.6533 3.4575 8 6 2.7362 0.0775 4.7195 9 6 3.1629 -0.8906 5.8250 10 6 4.1200 -1.9761 5.4046 11 1 3.7407 -2.9280 5.0634 12 6 5.4797 -1.7539 5.4554 13 7 5.9433 -0.6186 5.9305 14 14 6.6637 -3.0656 4.8495 15 1 5.8954 -4.2410 4.3666 16 1 7.4815 -2.5184 3.7373 17 1 7.5554 -3.4798 5.9624 18 6 2.1294 -1.2362 6.8989 19 6 3.3115 -0.3265 7.2394 20 6 2.0324 -0.7104 -1.2304 21 8 2.4742 -1.8364 -1.1426 22 7 1.9908 -0.0944 -2.4284 23 6 1.3384 1.2139 -2.5752 24 6 2.3265 2.1876 -3.2250 25 6 2.8377 1.5892 -4.5376 26 6 3.5707 0.2768 -4.2507 27 6 2.5966 -0.7185 -3.6126 28 1 1.8166 -0.9767 -4.3289 29 6 3.3532 -1.9814 -3.1962 30 1 -0.3633 0.4498 -0.9240 31 1 -0.3633 -1.0251 0.0725 32 1 -0.3633 0.5753 0.8516 33 1 2.2491 -1.6317 1.1526 34 1 2.8275 -1.5944 3.4140 35 1 3.4908 0.8560 4.6072 36 1 1.7815 0.5323 4.9835 37 1 6.8947 -0.4323 5.8996 38 1 1.1457 -0.7737 6.8182 39 1 2.1415 -2.2490 7.3016 40 1 4.1013 -0.7408 7.8659 41 1 3.1058 0.7344 7.3824 42 1 1.0472 1.5891 -1.5942 43 1 0.4558 1.1132 -3.2070 44 1 3.1663 2.3572 -2.5511 45 1 1.8254 3.1342 -3.4273 46 1 3.5222 2.2909 -5.0142 47 1 1.9949 1.3969 -5.2014 48 1 3.9546 -0.1368 -5.1832 49 1 4.3988 0.4646 -3.5672 50 1 4.0340 -1.7443 -2.3787 51 1 2.6419 -2.7396 -2.8684 52 1 3.9227 -2.3602 -4.0449 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430716267.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:00 Heat of formation + Delta-G solvation = -36.777592 kcal Electronic energy + Delta-G solvation = -30584.369365 eV Core-core repulsion = 26584.842451 eV Total energy + Delta-G solvation = -3999.526914 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.98419 -39.29516 -37.67886 -36.73106 -35.04394 -33.32921 -33.09654 -32.81877 -31.96788 -30.10727 -27.82976 -26.16096 -25.34632 -25.03443 -24.00137 -22.35124 -21.13445 -21.01011 -20.07111 -19.38774 -19.33662 -17.86646 -16.80067 -16.44571 -16.11466 -15.87925 -15.22106 -14.97604 -14.73960 -14.61311 -14.51122 -14.29435 -13.99638 -13.81942 -13.61241 -13.43684 -13.07646 -12.78941 -12.63412 -12.58160 -12.42021 -12.07936 -12.02716 -11.91611 -11.58720 -11.55028 -11.32704 -11.30647 -11.02483 -11.00463 -10.91145 -10.88557 -10.49808 -10.15355 -9.71529 -9.39047 -9.26133 -9.03301 -8.88642 -8.77903 -8.46251 -8.24510 -7.81771 -6.08846 -4.18828 2.40707 2.59797 3.25501 3.34025 3.35016 3.37255 3.82539 4.20252 4.35256 4.38967 4.47943 4.55349 4.69177 4.90347 4.92240 5.00054 5.07092 5.10964 5.13827 5.21347 5.28171 5.34178 5.38197 5.48044 5.51434 5.55303 5.61496 5.68911 5.71801 5.75909 5.90359 6.06120 6.09585 6.10610 6.16103 6.36836 6.48659 6.54227 6.59941 6.73966 6.77884 6.94447 7.15559 7.16936 7.32241 7.43926 7.54771 7.71713 7.79410 7.98844 8.35664 8.77549 8.84742 9.26684 9.49233 10.98601 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013835 B = 0.002937 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.427188 B = 9530.657416 C =10579.536405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 H 0.108 0.892 4 N -0.739 5.739 5 C 0.701 3.299 6 O -0.611 6.611 7 N -0.711 5.711 8 C 0.183 3.817 9 C 0.022 3.978 10 C -0.502 4.502 11 H 0.061 0.939 12 C 0.077 3.923 13 N -0.870 5.870 14 Si 0.887 3.113 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.212 4.212 19 C -0.142 4.142 20 C 0.516 3.484 21 O -0.524 6.524 22 N -0.608 5.608 23 C 0.100 3.900 24 C -0.139 4.139 25 C -0.120 4.120 26 C -0.133 4.133 27 C 0.145 3.855 28 H 0.070 0.930 29 C -0.140 4.140 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.404 0.596 34 H 0.404 0.596 35 H 0.057 0.943 36 H 0.039 0.961 37 H 0.261 0.739 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.093 0.907 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.077 0.923 46 H 0.066 0.934 47 H 0.063 0.937 48 H 0.074 0.926 49 H 0.068 0.932 50 H 0.068 0.932 51 H 0.076 0.924 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.062 3.329 -20.828 22.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.125 0.875 4 N -0.397 5.397 5 C 0.401 3.599 6 O -0.492 6.492 7 N -0.365 5.365 8 C 0.059 3.941 9 C 0.021 3.979 10 C -0.539 4.539 11 H 0.079 0.921 12 C -0.128 4.128 13 N -0.506 5.506 14 Si 0.714 3.286 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.250 4.250 19 C -0.180 4.180 20 C 0.304 3.696 21 O -0.400 6.400 22 N -0.343 5.343 23 C -0.023 4.023 24 C -0.177 4.177 25 C -0.157 4.157 26 C -0.172 4.172 27 C 0.042 3.958 28 H 0.088 0.912 29 C -0.197 4.197 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.240 0.760 34 H 0.240 0.760 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.081 0.919 42 H 0.112 0.888 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.096 0.904 46 H 0.084 0.916 47 H 0.082 0.918 48 H 0.093 0.907 49 H 0.087 0.913 50 H 0.087 0.913 51 H 0.095 0.905 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.882 3.863 -20.573 22.739 hybrid contribution 1.051 -1.296 -0.418 1.720 sum -7.831 2.567 -20.991 22.551 Atomic orbital electron populations 1.22227 0.93364 1.03291 1.03117 1.20477 0.95209 0.97584 0.83084 0.87470 1.44840 1.72777 1.14323 1.07801 1.15967 0.78683 0.84930 0.80355 1.90833 1.58820 1.14543 1.84956 1.45192 1.67945 1.14763 1.08577 1.20715 0.97964 0.93656 0.81756 1.19054 0.95645 0.96623 0.86556 1.20344 0.89738 0.98397 1.45434 0.92096 1.24976 0.98195 0.95520 0.94074 1.70013 1.13853 1.23468 1.43272 0.86629 0.81314 0.82099 0.78557 1.19567 1.20961 1.21004 1.23111 0.93054 0.99768 1.09025 1.22446 0.98236 0.95823 1.01459 1.20751 0.78028 0.86490 0.84380 1.90746 1.45614 1.18278 1.85384 1.48087 1.57231 1.20630 1.08303 1.21939 0.95300 0.82499 1.02533 1.21950 0.99863 0.98402 0.97467 1.21516 1.00229 0.96829 0.97145 1.22036 0.98514 0.95522 1.01095 1.21283 0.94913 0.93342 0.86237 0.91172 1.22199 1.00951 0.96290 1.00260 0.91535 0.91790 0.90368 0.75966 0.75953 0.92457 0.94263 0.92955 0.91722 0.90496 0.89423 0.91878 0.88843 0.90951 0.91107 0.90416 0.91571 0.91781 0.90749 0.91286 0.91280 0.90505 0.93766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.10 37.16 0.34 -1.46 16 2 C 0.15 1.96 2.12 -69.08 -0.15 1.82 16 3 H 0.11 1.50 6.53 -51.92 -0.34 1.16 16 4 N -0.74 -12.02 5.03 -59.81 -0.30 -12.33 16 5 C 0.70 13.99 8.53 -86.92 -0.74 13.25 16 6 O -0.61 -13.72 16.01 5.29 0.08 -13.64 16 7 N -0.71 -14.89 5.38 -65.23 -0.35 -15.24 16 8 C 0.18 4.21 5.78 -4.04 -0.02 4.19 16 9 C 0.02 0.52 1.91 -155.66 -0.30 0.23 16 10 C -0.50 -12.85 7.28 -34.44 -0.25 -13.10 16 11 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 12 C 0.08 2.03 5.42 -17.82 -0.10 1.94 16 13 N -0.87 -24.08 12.39 55.43 0.69 -23.40 16 14 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 15 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 C -0.21 -4.56 9.88 -26.73 -0.26 -4.82 16 19 C -0.14 -3.30 9.01 -26.73 -0.24 -3.54 16 20 C 0.52 6.65 6.78 -10.99 -0.07 6.58 16 21 O -0.52 -8.03 11.46 5.56 0.06 -7.97 16 22 N -0.61 -6.08 2.97 -165.23 -0.49 -6.57 16 23 C 0.10 0.74 5.36 -3.71 -0.02 0.72 16 24 C -0.14 -0.93 6.08 -26.61 -0.16 -1.10 16 25 C -0.12 -0.75 5.88 -26.69 -0.16 -0.91 16 26 C -0.13 -1.02 5.37 -26.61 -0.14 -1.16 16 27 C 0.14 1.33 3.49 -67.60 -0.24 1.09 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 C -0.14 -1.54 7.62 37.15 0.28 -1.26 16 30 H 0.07 0.55 6.27 -51.93 -0.33 0.23 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.40 6.39 7.73 -40.82 -0.32 6.07 16 34 H 0.40 8.23 7.24 -40.82 -0.30 7.94 16 35 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.04 0.87 7.92 -51.93 -0.41 0.46 16 37 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 38 H 0.06 1.27 8.06 -51.93 -0.42 0.85 16 39 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 40 H 0.09 2.20 8.01 -51.93 -0.42 1.78 16 41 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.09 0.70 4.78 -51.93 -0.25 0.45 16 43 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.07 0.94 6.78 -51.93 -0.35 0.58 16 51 H 0.08 0.97 6.72 -51.93 -0.35 0.62 16 52 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 403.87 15.07 6.09 6.09 Total: -1.00 -30.53 403.87 -10.41 -40.94 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: -8.93 Total: 14.07 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -2.23 Total: 2.46 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -0.46 Total: -57.54 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: 0.15 Total: -21.60 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -30.53 -10.41 -40.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430716267.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.160 kcal (2) G-P(sol) polarization free energy of solvation -30.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds