Wall clock time and date at job start Tue Mar 31 2020 21:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09008 * 109.47019 * 2 1 4 4 N 1.46502 * 109.47133 * 119.99660 * 2 1 3 5 5 C 1.34781 * 120.00105 * 275.00010 * 4 2 1 6 6 O 1.21584 * 119.99916 * 0.02562 * 5 4 2 7 7 N 1.34773 * 120.00007 * 180.02562 * 5 4 2 8 8 C 1.46495 * 119.99816 * 180.02562 * 7 5 4 9 9 C 1.53010 * 109.46995 * 175.88385 * 8 7 5 10 10 C 1.50699 * 115.55030 * 36.59233 * 9 8 7 11 11 H 1.08001 * 120.00114 * 268.83796 * 10 9 8 12 12 C 1.37873 * 119.99798 * 88.83010 * 10 9 8 13 13 N 1.31513 * 120.00410 * 3.24326 * 12 10 9 14 14 Si 1.86806 * 119.99920 * 183.23895 * 12 10 9 15 15 H 1.48496 * 109.46878 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.46772 * 120.00234 * 14 12 10 17 17 H 1.48501 * 109.47135 * 240.00496 * 14 12 10 18 18 C 1.53000 * 117.49600 * 250.88571 * 9 8 7 19 19 C 1.52995 * 60.00004 * 252.50963 * 18 9 8 20 20 C 1.50697 * 109.47233 * 239.99856 * 2 1 3 21 21 O 1.21272 * 120.00033 * 255.99427 * 20 2 1 22 22 N 1.34777 * 119.99916 * 75.99834 * 20 2 1 23 23 C 1.46927 * 120.63149 * 353.89445 * 22 20 2 24 24 C 1.53190 * 108.77920 * 126.41662 * 23 22 20 25 25 C 1.53039 * 109.31281 * 54.62873 * 24 23 22 26 26 C 1.53041 * 109.54153 * 298.63771 * 25 24 23 27 27 C 1.46925 * 120.62943 * 173.91417 * 22 20 2 28 28 H 1.09001 * 109.58669 * 113.80205 * 27 22 20 29 29 C 1.52992 * 109.58839 * 353.37297 * 27 22 20 30 30 H 1.08996 * 109.47131 * 64.04222 * 1 2 3 31 31 H 1.08995 * 109.47046 * 184.04618 * 1 2 3 32 32 H 1.09002 * 109.46759 * 304.04334 * 1 2 3 33 33 H 0.96997 * 119.99517 * 95.00152 * 4 2 1 34 34 H 0.96998 * 119.99826 * 359.97438 * 7 5 4 35 35 H 1.08999 * 109.47453 * 295.87843 * 8 7 5 36 36 H 1.08995 * 109.47671 * 55.88581 * 8 7 5 37 37 H 0.96995 * 120.00196 * 185.00197 * 13 12 10 38 38 H 1.08999 * 117.50216 * 359.97438 * 18 9 8 39 39 H 1.09000 * 117.49773 * 145.02145 * 18 9 8 40 40 H 1.08998 * 117.50310 * 252.51517 * 19 18 9 41 41 H 1.09006 * 117.51881 * 107.48357 * 19 18 9 42 42 H 1.08994 * 109.58602 * 6.62252 * 23 22 20 43 43 H 1.09006 * 109.58335 * 246.19913 * 23 22 20 44 44 H 1.09003 * 109.49113 * 294.68232 * 24 23 22 45 45 H 1.08999 * 109.52411 * 174.60430 * 24 23 22 46 46 H 1.08998 * 109.45865 * 178.61787 * 25 24 23 47 47 H 1.08997 * 109.45883 * 58.66195 * 25 24 23 48 48 H 1.09000 * 109.49441 * 181.31576 * 26 25 24 49 49 H 1.08994 * 109.49549 * 301.41324 * 26 25 24 50 50 H 1.08998 * 109.47657 * 308.35575 * 29 27 22 51 51 H 1.09006 * 109.47021 * 68.35357 * 29 27 22 52 52 H 1.09002 * 109.47399 * 188.35184 * 29 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1471 -0.0181 2.3572 6 8 1.8575 1.1614 2.4118 7 7 2.5969 -0.6533 3.4575 8 6 2.7362 0.0775 4.7195 9 6 3.1629 -0.8906 5.8250 10 6 4.1200 -1.9761 5.4046 11 1 3.7407 -2.9280 5.0634 12 6 5.4797 -1.7539 5.4554 13 7 5.9433 -0.6186 5.9305 14 14 6.6637 -3.0656 4.8495 15 1 5.8954 -4.2410 4.3666 16 1 7.4815 -2.5184 3.7373 17 1 7.5554 -3.4798 5.9624 18 6 2.1294 -1.2362 6.8989 19 6 3.3115 -0.3265 7.2394 20 6 2.0324 -0.7104 -1.2304 21 8 2.4742 -1.8364 -1.1426 22 7 1.9908 -0.0944 -2.4284 23 6 1.3384 1.2139 -2.5752 24 6 2.3265 2.1876 -3.2250 25 6 2.8377 1.5892 -4.5376 26 6 3.5707 0.2768 -4.2507 27 6 2.5966 -0.7185 -3.6126 28 1 1.8166 -0.9767 -4.3289 29 6 3.3532 -1.9814 -3.1962 30 1 -0.3633 0.4498 -0.9240 31 1 -0.3633 -1.0251 0.0725 32 1 -0.3633 0.5753 0.8516 33 1 2.2491 -1.6317 1.1526 34 1 2.8275 -1.5944 3.4140 35 1 3.4908 0.8560 4.6072 36 1 1.7815 0.5323 4.9835 37 1 6.8947 -0.4323 5.8996 38 1 1.1457 -0.7737 6.8182 39 1 2.1415 -2.2490 7.3016 40 1 4.1013 -0.7408 7.8659 41 1 3.1058 0.7344 7.3824 42 1 1.0472 1.5891 -1.5942 43 1 0.4558 1.1132 -3.2070 44 1 3.1663 2.3572 -2.5511 45 1 1.8254 3.1342 -3.4273 46 1 3.5222 2.2909 -5.0142 47 1 1.9949 1.3969 -5.2014 48 1 3.9546 -0.1368 -5.1832 49 1 4.3988 0.4646 -3.5672 50 1 4.0340 -1.7443 -2.3787 51 1 2.6419 -2.7396 -2.8684 52 1 3.9227 -2.3602 -4.0449 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430716267.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:59 Heat of formation + Delta-G solvation = -55.532434 kcal Electronic energy + Delta-G solvation = -30585.182636 eV Core-core repulsion = 26584.842451 eV Total energy + Delta-G solvation = -4000.340185 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.95740 -40.77369 -38.71509 -38.36369 -36.27094 -34.94202 -34.07842 -33.95719 -33.58917 -31.25627 -28.56769 -27.96143 -27.08712 -26.00626 -24.88698 -23.19300 -22.87200 -21.92506 -21.49442 -21.19448 -20.31877 -19.22770 -18.22541 -17.63994 -17.39366 -17.03426 -16.75281 -16.35908 -16.17664 -15.70571 -15.64543 -15.46815 -15.10667 -14.87883 -14.68792 -14.55094 -14.36396 -14.24648 -13.94058 -13.64929 -13.56901 -13.46142 -13.19606 -12.97085 -12.92654 -12.86778 -12.66610 -12.59637 -12.33565 -12.04818 -11.96983 -11.91078 -11.61129 -11.48833 -11.45404 -11.21600 -10.96885 -10.46617 -10.40546 -10.14271 -10.01812 -9.62578 -9.54164 -8.11449 -6.25085 1.37356 1.39281 1.44033 1.52258 1.61541 2.09165 2.23075 2.41065 3.16094 3.29697 3.38849 3.59114 3.79880 3.84511 3.93966 4.02084 4.05809 4.10635 4.28316 4.29083 4.33618 4.50051 4.55186 4.58665 4.66341 4.70181 4.72205 4.76252 4.79061 4.81100 4.93401 5.02047 5.03535 5.07056 5.08413 5.15247 5.18500 5.24815 5.29452 5.31748 5.44219 5.45948 5.48810 5.65233 5.67929 5.74241 5.79066 6.11667 6.29195 6.38091 6.83667 7.02842 7.19929 7.45094 7.65287 8.95918 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013835 B = 0.002937 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.427188 B = 9530.657416 C =10579.536405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.142 3.858 3 H 0.101 0.899 4 N -0.729 5.729 5 C 0.701 3.299 6 O -0.637 6.637 7 N -0.713 5.713 8 C 0.198 3.802 9 C -0.001 4.001 10 C -0.503 4.503 11 H 0.063 0.937 12 C 0.032 3.968 13 N -0.902 5.902 14 Si 0.943 3.057 15 H -0.261 1.261 16 H -0.289 1.289 17 H -0.285 1.285 18 C -0.184 4.184 19 C -0.149 4.149 20 C 0.514 3.486 21 O -0.556 6.556 22 N -0.601 5.601 23 C 0.093 3.907 24 C -0.138 4.138 25 C -0.116 4.116 26 C -0.130 4.130 27 C 0.142 3.858 28 H 0.093 0.907 29 C -0.133 4.133 30 H 0.099 0.901 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.407 0.593 34 H 0.406 0.594 35 H 0.023 0.977 36 H 0.047 0.953 37 H 0.258 0.742 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.048 0.952 45 H 0.099 0.901 46 H 0.073 0.927 47 H 0.082 0.918 48 H 0.091 0.909 49 H 0.046 0.954 50 H 0.036 0.964 51 H 0.058 0.942 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.693 3.188 -23.220 25.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.033 3.967 3 H 0.119 0.881 4 N -0.387 5.387 5 C 0.401 3.599 6 O -0.520 6.520 7 N -0.367 5.367 8 C 0.073 3.927 9 C -0.002 4.002 10 C -0.541 4.541 11 H 0.081 0.919 12 C -0.170 4.170 13 N -0.539 5.539 14 Si 0.770 3.230 15 H -0.185 1.185 16 H -0.216 1.216 17 H -0.211 1.211 18 C -0.221 4.221 19 C -0.187 4.187 20 C 0.301 3.699 21 O -0.434 6.434 22 N -0.335 5.335 23 C -0.029 4.029 24 C -0.176 4.176 25 C -0.153 4.153 26 C -0.168 4.168 27 C 0.040 3.960 28 H 0.111 0.889 29 C -0.190 4.190 30 H 0.118 0.882 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.244 0.756 34 H 0.243 0.757 35 H 0.041 0.959 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.109 0.891 43 H 0.119 0.881 44 H 0.067 0.933 45 H 0.117 0.883 46 H 0.092 0.908 47 H 0.101 0.899 48 H 0.109 0.891 49 H 0.065 0.935 50 H 0.055 0.945 51 H 0.077 0.923 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.537 3.719 -23.020 25.588 hybrid contribution 1.540 -1.227 0.267 1.987 sum -8.996 2.492 -22.753 24.593 Atomic orbital electron populations 1.22153 0.91251 1.03373 1.04211 1.20703 0.96828 0.96875 0.82297 0.88142 1.44799 1.71881 1.14387 1.07610 1.16021 0.78367 0.84615 0.80885 1.90808 1.59972 1.15692 1.85482 1.45073 1.68419 1.14712 1.08509 1.20408 0.97070 0.92808 0.82445 1.19136 0.97043 0.96905 0.87080 1.20607 0.90145 0.98813 1.44508 0.91888 1.25624 0.99760 0.97053 0.94513 1.70124 1.13851 1.25161 1.44785 0.85735 0.79393 0.80230 0.77672 1.18508 1.21587 1.21068 1.23105 0.93265 0.99645 1.06060 1.22348 0.98886 0.96612 1.00880 1.20636 0.78033 0.86174 0.85038 1.90747 1.47218 1.19584 1.85901 1.48177 1.56426 1.21286 1.07567 1.22216 0.96278 0.81176 1.03210 1.21958 0.99120 0.99246 0.97268 1.21518 1.00846 0.95895 0.97066 1.22015 0.97582 0.96150 1.01085 1.21440 0.95680 0.92822 0.86080 0.88884 1.22057 1.00245 0.97009 0.99734 0.88227 0.91761 0.91827 0.75632 0.75681 0.95870 0.93524 0.93282 0.89284 0.90049 0.91705 0.91080 0.89113 0.88051 0.93336 0.88302 0.90820 0.89921 0.89074 0.93542 0.94473 0.92305 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 9.10 71.98 0.65 -2.50 16 2 C 0.14 3.75 2.12 44.25 0.09 3.85 16 3 H 0.10 2.81 6.53 -2.38 -0.02 2.80 16 4 N -0.73 -23.89 5.03 -461.39 -2.32 -26.22 16 5 C 0.70 28.28 8.53 179.05 1.53 29.81 16 6 O -0.64 -28.92 16.01 -3.98 -0.06 -28.99 16 7 N -0.71 -30.15 5.38 -478.54 -2.57 -32.72 16 8 C 0.20 9.18 5.78 86.38 0.50 9.68 16 9 C 0.00 -0.04 1.91 -52.93 -0.10 -0.15 16 10 C -0.50 -25.79 7.28 25.60 0.19 -25.60 16 11 H 0.06 3.14 7.81 -2.91 -0.02 3.12 16 12 C 0.03 1.69 5.42 84.65 0.46 2.15 16 13 N -0.90 -50.97 12.39 21.45 0.27 -50.70 16 14 Si 0.94 42.72 29.54 68.60 2.03 44.75 16 15 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 16 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 17 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 18 C -0.18 -7.62 9.88 30.59 0.30 -7.32 16 19 C -0.15 -6.96 9.01 30.59 0.28 -6.69 16 20 C 0.51 13.03 6.78 87.66 0.59 13.63 16 21 O -0.56 -17.26 11.46 -3.00 -0.03 -17.30 16 22 N -0.60 -11.12 2.97 -795.05 -2.36 -13.48 16 23 C 0.09 1.13 5.36 86.36 0.46 1.59 16 24 C -0.14 -1.53 6.08 30.67 0.19 -1.34 16 25 C -0.12 -1.10 5.88 30.62 0.18 -0.92 16 26 C -0.13 -1.73 5.37 30.67 0.16 -1.57 16 27 C 0.14 2.33 3.49 44.97 0.16 2.49 16 28 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 29 C -0.13 -2.89 7.62 71.98 0.55 -2.35 16 30 H 0.10 1.39 6.27 -2.39 -0.01 1.37 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.41 13.00 7.73 -92.71 -0.72 12.29 16 34 H 0.41 16.65 7.24 -92.71 -0.67 15.98 16 35 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.05 2.07 7.92 -2.39 -0.02 2.05 16 37 H 0.26 14.10 8.32 -92.71 -0.77 13.33 16 38 H 0.09 3.27 8.06 -2.39 -0.02 3.25 16 39 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 40 H 0.06 3.30 8.01 -2.39 -0.02 3.28 16 41 H 0.07 3.15 8.14 -2.38 -0.02 3.13 16 42 H 0.09 1.17 4.78 -2.39 -0.01 1.16 16 43 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 44 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.04 1.03 6.78 -2.39 -0.02 1.02 16 51 H 0.06 1.48 6.72 -2.38 -0.02 1.47 16 52 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -67.10 403.87 0.66 -66.43 By element: Atomic # 1 Polarization: 43.92 SS G_CDS: -0.47 Total: 43.45 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 6.19 Total: 14.77 kcal Atomic # 7 Polarization: -116.13 SS G_CDS: -6.99 Total: -123.12 kcal Atomic # 8 Polarization: -46.19 SS G_CDS: -0.10 Total: -46.28 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -67.10 0.66 -66.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430716267.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.903 kcal (2) G-P(sol) polarization free energy of solvation -67.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds