Wall clock time and date at job start Tue Mar 31 2020 21:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.45480 * 2 1 4 4 C 1.53040 * 109.45990 * 119.97596 * 2 1 3 5 5 C 1.53121 * 109.27286 * 179.19289 * 4 2 1 6 6 C 1.53110 * 109.16330 * 302.34199 * 5 4 2 7 7 C 1.53033 * 109.27758 * 57.65753 * 6 5 4 8 8 N 1.46844 * 109.52608 * 300.81953 * 7 6 5 9 9 C 1.46903 * 111.00588 * 185.83864 * 8 7 6 10 10 C 1.53002 * 109.46824 * 73.10007 * 9 8 7 11 11 C 1.50703 * 109.46795 * 180.02562 * 10 9 8 12 12 O 1.21277 * 120.00141 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99796 * 180.02562 * 11 10 9 14 14 C 1.46959 * 120.59515 * 180.02562 * 13 11 10 15 15 C 1.53376 * 108.63574 * 235.20218 * 14 13 11 16 16 N 1.46962 * 108.62747 * 310.57184 * 15 14 13 17 17 C 1.34783 * 120.59296 * 235.20126 * 16 15 14 18 18 O 1.21685 * 119.99728 * 4.81591 * 17 16 15 19 19 C 1.46372 * 120.00041 * 184.81717 * 17 16 15 20 20 H 1.07996 * 120.00355 * 335.33771 * 19 17 16 21 21 C 1.40045 * 120.00103 * 155.61724 * 19 17 16 22 22 N 1.30676 * 120.00323 * 173.89171 * 21 19 17 23 23 Si 1.86806 * 120.00008 * 353.89449 * 21 19 17 24 24 H 1.48499 * 109.47207 * 86.50321 * 23 21 19 25 25 H 1.48499 * 109.47112 * 206.51108 * 23 21 19 26 26 H 1.48498 * 109.46637 * 326.50654 * 23 21 19 27 27 C 1.46966 * 118.81725 * 55.47876 * 16 15 14 28 28 C 1.46962 * 120.59223 * 359.96935 * 13 11 10 29 29 H 1.08993 * 109.47295 * 170.28423 * 1 2 3 30 30 H 1.09010 * 109.46963 * 290.28521 * 1 2 3 31 31 H 1.08998 * 109.47007 * 50.28289 * 1 2 3 32 32 H 1.08994 * 109.50382 * 59.25472 * 4 2 1 33 33 H 1.09004 * 109.53159 * 299.14993 * 4 2 1 34 34 H 1.09005 * 109.51917 * 182.43655 * 5 4 2 35 35 H 1.09003 * 109.52582 * 62.25472 * 5 4 2 36 36 H 1.09007 * 109.50568 * 297.71990 * 6 5 4 37 37 H 1.09003 * 109.53878 * 177.61740 * 6 5 4 38 38 H 1.09008 * 109.46639 * 180.80667 * 7 6 5 39 39 H 1.09001 * 109.46456 * 60.84079 * 7 6 5 40 40 H 1.09000 * 109.46754 * 313.10514 * 9 8 7 41 41 H 1.08997 * 109.47351 * 193.10571 * 9 8 7 42 42 H 1.09000 * 109.47041 * 60.00683 * 10 9 8 43 43 H 1.08997 * 109.47617 * 300.00401 * 10 9 8 44 44 H 1.08999 * 109.61858 * 115.45033 * 14 13 11 45 45 H 1.09011 * 109.60914 * 354.94086 * 14 13 11 46 46 H 1.08997 * 109.60857 * 190.82948 * 15 14 13 47 47 H 1.08995 * 109.60996 * 70.31473 * 15 14 13 48 48 H 0.96999 * 119.99825 * 180.02562 * 22 21 19 49 49 H 1.09002 * 109.60423 * 64.26491 * 27 16 15 50 50 H 1.08992 * 109.61268 * 184.77303 * 27 16 15 51 51 H 1.09004 * 109.61346 * 244.54194 * 28 13 11 52 52 H 1.08992 * 109.61162 * 4.88777 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7210 1.2500 5 6 3.5709 -0.7361 1.2355 6 6 4.0547 -1.4189 -0.0467 7 6 3.4864 -0.6778 -1.2591 8 7 2.0192 -0.6918 -1.1994 9 6 1.4372 -0.1105 -2.4166 10 6 1.6081 -1.0885 -3.5807 11 6 1.0115 -0.4920 -4.8295 12 8 0.5005 0.6072 -4.7921 13 7 1.0459 -1.1801 -5.9878 14 6 0.4686 -0.6107 -7.2135 15 6 -0.5588 -1.6004 -7.7770 16 7 0.0574 -2.9333 -7.8372 17 6 0.0918 -3.6214 -8.9956 18 8 -0.3102 -3.1057 -10.0218 19 6 0.6128 -4.9891 -9.0192 20 1 1.3128 -5.3134 -8.2634 21 6 0.2082 -5.8753 -10.0252 22 7 0.7615 -7.0555 -10.1177 23 14 -1.1226 -5.3703 -11.2350 24 1 -0.5072 -4.6369 -12.3702 25 1 -1.8139 -6.5817 -11.7447 26 1 -2.1047 -4.4907 -10.5517 27 6 0.6298 -3.5051 -6.6103 28 6 1.6624 -2.5128 -6.0481 29 1 -0.3633 -1.0128 -0.1734 30 1 -0.3633 0.3563 0.9640 31 1 -0.3633 0.6567 -0.7905 32 1 1.6658 -1.7447 1.2576 33 1 1.6894 -0.1987 2.1403 34 1 3.9379 -1.2864 2.1019 35 1 3.9457 0.2870 1.2672 36 1 3.7123 -2.4537 -0.0595 37 1 5.1438 -1.3954 -0.0836 38 1 3.8173 -1.1700 -2.1736 39 1 3.8403 0.3532 -1.2532 40 1 1.9445 0.8253 -2.6508 41 1 0.3763 0.0816 -2.2561 42 1 1.1007 -2.0244 -3.3465 43 1 2.6689 -1.2806 -3.7412 44 1 1.2577 -0.4452 -7.9471 45 1 -0.0228 0.3343 -6.9817 46 1 -0.8555 -1.2890 -8.7785 47 1 -1.4328 -1.6304 -7.1265 48 1 0.4814 -7.6692 -10.8148 49 1 -0.1617 -3.6676 -5.8787 50 1 1.1180 -4.4518 -6.8411 51 1 2.5364 -2.4825 -6.6988 52 1 1.9623 -2.8227 -5.0471 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516191837.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:39 Heat of formation + Delta-G solvation = -75.512082 kcal Electronic energy + Delta-G solvation = -30175.236198 eV Core-core repulsion = 26174.029630 eV Total energy + Delta-G solvation = -4001.206568 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.28800 -39.47900 -38.28848 -36.22299 -34.50520 -33.29041 -32.90828 -32.88985 -31.51426 -30.13083 -27.69098 -27.33436 -26.33068 -24.96180 -23.41950 -22.79077 -21.89693 -21.34409 -19.95632 -19.80733 -18.44823 -17.43688 -16.61324 -16.18708 -15.98800 -15.77404 -15.51409 -15.36573 -14.91972 -14.73317 -14.49669 -14.40836 -14.30968 -14.11928 -13.71771 -13.59839 -12.91671 -12.82069 -12.59763 -12.44452 -12.40564 -12.23498 -12.16266 -12.14004 -11.90587 -11.82365 -11.38150 -11.22727 -11.18240 -11.13725 -11.06521 -10.98029 -10.80732 -10.56998 -10.44784 -10.43282 -9.70499 -9.58903 -9.06289 -8.80111 -8.57311 -8.04360 -7.57650 -6.66752 -4.87809 2.67391 2.95787 3.39287 3.42732 3.60164 3.64668 4.10847 4.12097 4.42346 4.45025 4.46745 4.55040 4.66094 4.70780 4.90689 4.94226 5.04920 5.06899 5.15055 5.17815 5.21193 5.28166 5.30658 5.35949 5.42158 5.43310 5.51245 5.53860 5.57042 5.61512 5.63043 5.70640 5.76635 5.80424 5.81547 5.85668 5.89561 5.94349 5.98532 6.10266 6.15539 6.22105 6.35247 6.60513 6.83636 6.87606 6.97321 7.46611 7.52594 7.79643 8.21169 8.23517 8.64106 9.04228 9.91888 10.34741 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020782 B = 0.002294 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.025067 B =12201.687814 C =12901.436774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.083 3.917 3 H 0.038 0.962 4 C -0.111 4.111 5 C -0.122 4.122 6 C -0.117 4.117 7 C 0.052 3.948 8 N -0.534 5.534 9 C 0.066 3.934 10 C -0.134 4.134 11 C 0.515 3.485 12 O -0.553 6.553 13 N -0.606 5.606 14 C 0.098 3.902 15 C 0.105 3.895 16 N -0.633 5.633 17 C 0.559 3.441 18 O -0.612 6.612 19 C -0.536 4.536 20 H 0.092 0.908 21 C 0.104 3.896 22 N -0.831 5.831 23 Si 0.956 3.044 24 H -0.276 1.276 25 H -0.316 1.316 26 H -0.266 1.266 27 C 0.107 3.893 28 C 0.089 3.911 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.031 0.969 40 H 0.041 0.959 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.091 0.909 44 H 0.069 0.931 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.053 0.947 48 H 0.282 0.718 49 H 0.055 0.945 50 H 0.112 0.888 51 H 0.074 0.926 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.097 10.410 22.404 25.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 H 0.056 0.944 4 C -0.149 4.149 5 C -0.160 4.160 6 C -0.155 4.155 7 C -0.076 4.076 8 N -0.260 5.260 9 C -0.062 4.062 10 C -0.174 4.174 11 C 0.303 3.697 12 O -0.432 6.432 13 N -0.340 5.340 14 C -0.025 4.025 15 C -0.020 4.020 16 N -0.367 5.367 17 C 0.367 3.633 18 O -0.502 6.502 19 C -0.572 4.572 20 H 0.110 0.890 21 C -0.114 4.114 22 N -0.461 5.461 23 Si 0.787 3.213 24 H -0.201 1.201 25 H -0.246 1.246 26 H -0.191 1.191 27 C -0.017 4.017 28 C -0.035 4.035 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.050 0.950 40 H 0.059 0.941 41 H 0.107 0.893 42 H 0.121 0.879 43 H 0.109 0.891 44 H 0.087 0.913 45 H 0.112 0.888 46 H 0.116 0.884 47 H 0.071 0.929 48 H 0.092 0.908 49 H 0.073 0.927 50 H 0.130 0.870 51 H 0.093 0.907 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.532 10.579 21.872 24.715 hybrid contribution -0.064 0.839 -0.570 1.016 sum 4.468 11.418 21.302 24.579 Atomic orbital electron populations 1.21958 0.94264 1.02920 1.01734 1.21574 0.95419 0.95302 0.90188 0.94373 1.21638 0.95391 1.01572 0.96306 1.21589 0.95918 1.00557 0.97931 1.21583 0.99648 1.00380 0.93863 1.22146 0.87435 0.98883 0.99105 1.61906 1.06954 1.55272 1.01839 1.21889 1.01395 0.94892 0.88013 1.21613 1.02527 1.01079 0.92173 1.20633 0.79229 0.85203 0.84598 1.90662 1.46362 1.20669 1.85499 1.48114 1.58159 1.18509 1.09181 1.22060 0.97370 0.97694 0.85379 1.21634 0.94223 0.83956 1.02169 1.47785 1.62262 1.17243 1.09450 1.18429 0.77417 0.86781 0.80655 1.90283 1.57024 1.70409 1.32498 1.20690 1.28663 0.93978 1.13864 0.89005 1.25665 0.95998 0.93584 0.96116 1.69535 1.38174 1.07178 1.31204 0.85438 0.80728 0.74894 0.80232 1.20145 1.24634 1.19063 1.21964 0.95453 0.97314 0.87010 1.22416 0.96796 0.82102 1.02197 0.91417 0.92168 0.92278 0.90921 0.91703 0.91830 0.92462 0.90904 0.91635 0.90519 0.95040 0.94099 0.89334 0.87931 0.89125 0.91296 0.88790 0.88439 0.92855 0.90778 0.92694 0.87030 0.90735 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.51 37.16 0.32 -0.88 16 2 C 0.08 0.68 2.44 -67.72 -0.17 0.52 16 3 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 4 C -0.11 -0.77 5.36 -26.65 -0.14 -0.92 16 5 C -0.12 -0.80 6.00 -26.61 -0.16 -0.96 16 6 C -0.12 -0.81 6.09 -26.66 -0.16 -0.97 16 7 C 0.05 0.42 5.30 -3.84 -0.02 0.40 16 8 N -0.53 -4.81 4.44 -226.69 -1.01 -5.81 16 9 C 0.07 0.68 4.08 -3.82 -0.02 0.67 16 10 C -0.13 -1.37 4.11 -27.88 -0.11 -1.49 16 11 C 0.52 7.14 7.70 -10.98 -0.08 7.05 16 12 O -0.55 -9.35 15.39 5.56 0.09 -9.27 16 13 N -0.61 -8.64 2.95 -172.19 -0.51 -9.15 16 14 C 0.10 1.54 6.59 -3.60 -0.02 1.51 16 15 C 0.10 1.89 6.60 -3.60 -0.02 1.86 16 16 N -0.63 -12.98 2.94 -173.85 -0.51 -13.49 16 17 C 0.56 14.27 7.10 -12.99 -0.09 14.18 16 18 O -0.61 -17.24 12.28 5.20 0.06 -17.17 16 19 C -0.54 -14.37 9.23 -35.63 -0.33 -14.70 16 20 H 0.09 2.40 6.18 -52.49 -0.32 2.08 16 21 C 0.10 2.87 5.52 -17.37 -0.10 2.77 16 22 N -0.83 -22.90 13.92 55.55 0.77 -22.13 16 23 Si 0.96 24.63 25.96 -169.99 -4.41 20.21 16 24 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.32 -7.71 7.11 56.52 0.40 -7.31 16 26 H -0.27 -7.16 6.72 56.52 0.38 -6.78 16 27 C 0.11 1.75 6.51 -3.34 -0.02 1.73 16 28 C 0.09 1.15 6.52 -3.35 -0.02 1.13 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.39 8.12 -51.92 -0.42 -0.03 16 31 H 0.06 0.51 6.55 -51.93 -0.34 0.17 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.60 6.57 -51.92 -0.34 0.26 16 39 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.04 0.47 7.99 -51.93 -0.42 0.06 16 41 H 0.09 0.99 5.51 -51.93 -0.29 0.71 16 42 H 0.10 0.98 7.72 -51.93 -0.40 0.58 16 43 H 0.09 0.81 6.48 -51.93 -0.34 0.47 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.09 1.44 6.99 -51.92 -0.36 1.08 16 46 H 0.10 1.90 6.99 -51.93 -0.36 1.54 16 47 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 48 H 0.28 7.19 8.29 -40.82 -0.34 6.85 16 49 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 50 H 0.11 1.94 5.44 -51.93 -0.28 1.66 16 51 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 52 H 0.09 0.88 5.91 -51.93 -0.31 0.57 16 LS Contribution 391.06 15.07 5.89 5.89 Total: -1.00 -32.27 391.06 -9.61 -41.89 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -8.83 Total: -2.89 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: -1.16 Total: 11.92 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: -1.25 Total: -50.58 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: 0.15 Total: -26.44 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -4.41 Total: 20.21 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.27 -9.61 -41.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516191837.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.626 kcal (2) G-P(sol) polarization free energy of solvation -32.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds