Wall clock time and date at job start Tue Mar 31 2020 21:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.45480 * 2 1 4 4 C 1.53040 * 109.45990 * 119.97596 * 2 1 3 5 5 C 1.53121 * 109.27286 * 179.19289 * 4 2 1 6 6 C 1.53110 * 109.16330 * 302.34199 * 5 4 2 7 7 C 1.53033 * 109.27758 * 57.65753 * 6 5 4 8 8 N 1.46844 * 109.52608 * 300.81953 * 7 6 5 9 9 C 1.46903 * 111.00588 * 185.83864 * 8 7 6 10 10 C 1.53002 * 109.46824 * 73.10007 * 9 8 7 11 11 C 1.50703 * 109.46795 * 180.02562 * 10 9 8 12 12 O 1.21277 * 120.00141 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99796 * 180.02562 * 11 10 9 14 14 C 1.46959 * 120.59515 * 180.02562 * 13 11 10 15 15 C 1.53376 * 108.63574 * 235.20218 * 14 13 11 16 16 N 1.46962 * 108.62747 * 310.57184 * 15 14 13 17 17 C 1.34783 * 120.59296 * 235.20126 * 16 15 14 18 18 O 1.21685 * 119.99728 * 4.81591 * 17 16 15 19 19 C 1.46372 * 120.00041 * 184.81717 * 17 16 15 20 20 H 1.07996 * 120.00355 * 335.33771 * 19 17 16 21 21 C 1.40045 * 120.00103 * 155.61724 * 19 17 16 22 22 N 1.30676 * 120.00323 * 173.89171 * 21 19 17 23 23 Si 1.86806 * 120.00008 * 353.89449 * 21 19 17 24 24 H 1.48499 * 109.47207 * 86.50321 * 23 21 19 25 25 H 1.48499 * 109.47112 * 206.51108 * 23 21 19 26 26 H 1.48498 * 109.46637 * 326.50654 * 23 21 19 27 27 C 1.46966 * 118.81725 * 55.47876 * 16 15 14 28 28 C 1.46962 * 120.59223 * 359.96935 * 13 11 10 29 29 H 1.08993 * 109.47295 * 170.28423 * 1 2 3 30 30 H 1.09010 * 109.46963 * 290.28521 * 1 2 3 31 31 H 1.08998 * 109.47007 * 50.28289 * 1 2 3 32 32 H 1.08994 * 109.50382 * 59.25472 * 4 2 1 33 33 H 1.09004 * 109.53159 * 299.14993 * 4 2 1 34 34 H 1.09005 * 109.51917 * 182.43655 * 5 4 2 35 35 H 1.09003 * 109.52582 * 62.25472 * 5 4 2 36 36 H 1.09007 * 109.50568 * 297.71990 * 6 5 4 37 37 H 1.09003 * 109.53878 * 177.61740 * 6 5 4 38 38 H 1.09008 * 109.46639 * 180.80667 * 7 6 5 39 39 H 1.09001 * 109.46456 * 60.84079 * 7 6 5 40 40 H 1.09000 * 109.46754 * 313.10514 * 9 8 7 41 41 H 1.08997 * 109.47351 * 193.10571 * 9 8 7 42 42 H 1.09000 * 109.47041 * 60.00683 * 10 9 8 43 43 H 1.08997 * 109.47617 * 300.00401 * 10 9 8 44 44 H 1.08999 * 109.61858 * 115.45033 * 14 13 11 45 45 H 1.09011 * 109.60914 * 354.94086 * 14 13 11 46 46 H 1.08997 * 109.60857 * 190.82948 * 15 14 13 47 47 H 1.08995 * 109.60996 * 70.31473 * 15 14 13 48 48 H 0.96999 * 119.99825 * 180.02562 * 22 21 19 49 49 H 1.09002 * 109.60423 * 64.26491 * 27 16 15 50 50 H 1.08992 * 109.61268 * 184.77303 * 27 16 15 51 51 H 1.09004 * 109.61346 * 244.54194 * 28 13 11 52 52 H 1.08992 * 109.61162 * 4.88777 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7210 1.2500 5 6 3.5709 -0.7361 1.2355 6 6 4.0547 -1.4189 -0.0467 7 6 3.4864 -0.6778 -1.2591 8 7 2.0192 -0.6918 -1.1994 9 6 1.4372 -0.1105 -2.4166 10 6 1.6081 -1.0885 -3.5807 11 6 1.0115 -0.4920 -4.8295 12 8 0.5005 0.6072 -4.7921 13 7 1.0459 -1.1801 -5.9878 14 6 0.4686 -0.6107 -7.2135 15 6 -0.5588 -1.6004 -7.7770 16 7 0.0574 -2.9333 -7.8372 17 6 0.0918 -3.6214 -8.9956 18 8 -0.3102 -3.1057 -10.0218 19 6 0.6128 -4.9891 -9.0192 20 1 1.3128 -5.3134 -8.2634 21 6 0.2082 -5.8753 -10.0252 22 7 0.7615 -7.0555 -10.1177 23 14 -1.1226 -5.3703 -11.2350 24 1 -0.5072 -4.6369 -12.3702 25 1 -1.8139 -6.5817 -11.7447 26 1 -2.1047 -4.4907 -10.5517 27 6 0.6298 -3.5051 -6.6103 28 6 1.6624 -2.5128 -6.0481 29 1 -0.3633 -1.0128 -0.1734 30 1 -0.3633 0.3563 0.9640 31 1 -0.3633 0.6567 -0.7905 32 1 1.6658 -1.7447 1.2576 33 1 1.6894 -0.1987 2.1403 34 1 3.9379 -1.2864 2.1019 35 1 3.9457 0.2870 1.2672 36 1 3.7123 -2.4537 -0.0595 37 1 5.1438 -1.3954 -0.0836 38 1 3.8173 -1.1700 -2.1736 39 1 3.8403 0.3532 -1.2532 40 1 1.9445 0.8253 -2.6508 41 1 0.3763 0.0816 -2.2561 42 1 1.1007 -2.0244 -3.3465 43 1 2.6689 -1.2806 -3.7412 44 1 1.2577 -0.4452 -7.9471 45 1 -0.0228 0.3343 -6.9817 46 1 -0.8555 -1.2890 -8.7785 47 1 -1.4328 -1.6304 -7.1265 48 1 0.4814 -7.6692 -10.8148 49 1 -0.1617 -3.6676 -5.8787 50 1 1.1180 -4.4518 -6.8411 51 1 2.5364 -2.4825 -6.6988 52 1 1.9623 -2.8227 -5.0471 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516191837.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:36 Heat of formation + Delta-G solvation = -96.562721 kcal Electronic energy + Delta-G solvation = -30176.149022 eV Core-core repulsion = 26174.029630 eV Total energy + Delta-G solvation = -4002.119392 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.43436 -40.35395 -39.81735 -37.76830 -35.22602 -34.98753 -34.76787 -33.54906 -32.73669 -31.04279 -29.33191 -28.12537 -27.78471 -25.83822 -24.66168 -23.87642 -22.94137 -22.12587 -21.26652 -20.56885 -19.85279 -18.81997 -18.28912 -17.52950 -17.20340 -16.97348 -16.59316 -16.41769 -16.19109 -15.92421 -15.87720 -15.39368 -15.23085 -15.08149 -14.69059 -14.60739 -14.50026 -14.15634 -14.00627 -13.73849 -13.65397 -13.37024 -13.11958 -13.02103 -12.90102 -12.81990 -12.72373 -12.63834 -12.43364 -12.34792 -12.26576 -12.05432 -11.85613 -11.56334 -11.53885 -11.18283 -11.15800 -11.05039 -10.84684 -10.19898 -10.01558 -9.28724 -9.16594 -8.76814 -6.96250 1.31441 1.35130 1.55903 1.58601 1.83983 2.07426 2.30440 2.62530 2.87967 3.27111 3.59996 3.82226 3.86893 3.90926 3.92821 3.97707 4.07160 4.18172 4.19669 4.27770 4.31161 4.42458 4.44508 4.47284 4.49892 4.60038 4.63953 4.65754 4.71048 4.76747 4.82385 4.84647 4.89627 4.93333 5.02485 5.05421 5.05766 5.10968 5.12226 5.16839 5.28304 5.29738 5.36067 5.41538 5.54718 5.68998 5.94360 6.12591 6.20433 6.21905 6.37751 6.64141 7.10050 7.10977 7.93943 8.28775 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020782 B = 0.002294 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.025067 B =12201.687814 C =12901.436774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.080 3.920 3 H 0.030 0.970 4 C -0.108 4.108 5 C -0.122 4.122 6 C -0.114 4.114 7 C 0.049 3.951 8 N -0.533 5.533 9 C 0.072 3.928 10 C -0.124 4.124 11 C 0.516 3.484 12 O -0.586 6.586 13 N -0.608 5.608 14 C 0.109 3.891 15 C 0.106 3.894 16 N -0.632 5.632 17 C 0.555 3.445 18 O -0.645 6.645 19 C -0.548 4.548 20 H 0.094 0.906 21 C 0.074 3.926 22 N -0.850 5.850 23 Si 0.995 3.005 24 H -0.291 1.291 25 H -0.294 1.294 26 H -0.288 1.288 27 C 0.101 3.899 28 C 0.099 3.901 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.025 0.975 40 H 0.024 0.976 41 H 0.077 0.923 42 H 0.119 0.881 43 H 0.112 0.888 44 H 0.065 0.935 45 H 0.097 0.903 46 H 0.077 0.923 47 H 0.064 0.936 48 H 0.291 0.709 49 H 0.072 0.928 50 H 0.101 0.899 51 H 0.073 0.927 52 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.896 10.174 24.647 27.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.028 4.028 3 H 0.048 0.952 4 C -0.145 4.145 5 C -0.160 4.160 6 C -0.152 4.152 7 C -0.079 4.079 8 N -0.259 5.259 9 C -0.056 4.056 10 C -0.164 4.164 11 C 0.306 3.694 12 O -0.466 6.466 13 N -0.341 5.341 14 C -0.015 4.015 15 C -0.018 4.018 16 N -0.365 5.365 17 C 0.362 3.638 18 O -0.538 6.538 19 C -0.585 4.585 20 H 0.112 0.888 21 C -0.142 4.142 22 N -0.482 5.482 23 Si 0.827 3.173 24 H -0.218 1.218 25 H -0.223 1.223 26 H -0.214 1.214 27 C -0.022 4.022 28 C -0.024 4.024 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.095 0.905 42 H 0.137 0.863 43 H 0.130 0.870 44 H 0.083 0.917 45 H 0.115 0.885 46 H 0.096 0.904 47 H 0.082 0.918 48 H 0.101 0.899 49 H 0.090 0.910 50 H 0.119 0.881 51 H 0.091 0.909 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.347 10.321 24.165 26.816 hybrid contribution -0.313 0.994 -1.184 1.577 sum 5.034 11.314 22.981 26.105 Atomic orbital electron populations 1.21925 0.94136 1.02391 1.02063 1.21650 0.95579 0.95051 0.90545 0.95193 1.21618 0.95750 1.01243 0.95930 1.21600 0.95524 1.00640 0.98226 1.21573 1.00250 0.99963 0.93398 1.22233 0.86786 0.98810 1.00079 1.61961 1.07565 1.54923 1.01428 1.21755 1.00674 0.94394 0.88801 1.21606 1.03617 1.01158 0.89985 1.21234 0.78376 0.84648 0.85127 1.90656 1.47764 1.22280 1.85945 1.48175 1.58133 1.18973 1.08823 1.21815 0.96629 0.97036 0.86053 1.21699 0.95269 0.83216 1.01575 1.47736 1.61550 1.17800 1.09429 1.18391 0.77057 0.86811 0.81574 1.90257 1.58159 1.71163 1.34210 1.20912 1.28985 0.94632 1.13936 0.88794 1.26083 0.97037 0.93949 0.97108 1.69532 1.38949 1.07562 1.32115 0.84898 0.79162 0.74696 0.78590 1.21839 1.22269 1.21421 1.22201 0.96702 0.97743 0.85556 1.22428 0.95209 0.80450 1.04347 0.91826 0.90878 0.93416 0.91241 0.90662 0.90788 0.92593 0.91128 0.90580 0.89903 0.95689 0.95725 0.90459 0.86290 0.86965 0.91707 0.88466 0.90432 0.91757 0.89899 0.90990 0.88068 0.90887 0.84955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.51 71.98 0.61 -1.54 16 2 C 0.08 1.20 2.44 44.94 0.11 1.30 16 3 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 4 C -0.11 -1.27 5.36 30.65 0.16 -1.11 16 5 C -0.12 -1.32 6.00 30.67 0.18 -1.13 16 6 C -0.11 -1.30 6.09 30.64 0.19 -1.11 16 7 C 0.05 0.68 5.30 86.32 0.46 1.13 16 8 N -0.53 -8.56 4.44 -871.10 -3.87 -12.42 16 9 C 0.07 1.38 4.08 86.30 0.35 1.73 16 10 C -0.12 -2.16 4.11 29.85 0.12 -2.04 16 11 C 0.52 13.14 7.70 87.66 0.67 13.81 16 12 O -0.59 -19.14 15.39 -3.02 -0.05 -19.18 16 13 N -0.61 -15.93 2.95 -817.08 -2.41 -18.34 16 14 C 0.11 3.28 6.59 86.42 0.57 3.85 16 15 C 0.11 3.78 6.60 86.42 0.57 4.35 16 16 N -0.63 -25.44 2.94 -822.16 -2.42 -27.86 16 17 C 0.55 28.40 7.10 86.36 0.61 29.01 16 18 O -0.64 -36.82 12.28 -4.30 -0.05 -36.87 16 19 C -0.55 -29.36 9.23 24.83 0.23 -29.14 16 20 H 0.09 4.89 6.18 -2.91 -0.02 4.87 16 21 C 0.07 4.06 5.52 85.30 0.47 4.53 16 22 N -0.85 -46.47 13.92 21.84 0.30 -46.17 16 23 Si 0.99 50.89 25.96 68.60 1.78 52.67 16 24 H -0.29 -15.52 7.11 99.48 0.71 -14.81 16 25 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 26 H -0.29 -15.64 6.72 99.48 0.67 -14.97 16 27 C 0.10 3.10 6.51 86.58 0.56 3.66 16 28 C 0.10 2.26 6.52 86.58 0.56 2.83 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 30 H 0.07 0.85 8.12 -2.38 -0.02 0.83 16 31 H 0.05 0.79 6.55 -2.39 -0.02 0.78 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 36 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.08 1.04 6.57 -2.38 -0.02 1.02 16 39 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.02 0.55 7.99 -2.39 -0.02 0.53 16 41 H 0.08 1.66 5.51 -2.39 -0.01 1.65 16 42 H 0.12 1.78 7.72 -2.39 -0.02 1.76 16 43 H 0.11 1.54 6.48 -2.39 -0.02 1.52 16 44 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.10 2.91 6.99 -2.38 -0.02 2.89 16 46 H 0.08 3.07 6.99 -2.39 -0.02 3.06 16 47 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 48 H 0.29 14.60 8.29 -92.71 -0.77 13.83 16 49 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 50 H 0.10 3.36 5.44 -2.39 -0.01 3.34 16 51 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 52 H 0.13 1.95 5.91 -2.39 -0.01 1.94 16 Total: -1.00 -69.45 391.06 0.61 -68.84 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: 0.87 Total: 9.19 kcal Atomic # 6 Polarization: 23.69 SS G_CDS: 6.45 Total: 30.14 kcal Atomic # 7 Polarization: -96.40 SS G_CDS: -8.39 Total: -104.79 kcal Atomic # 8 Polarization: -55.96 SS G_CDS: -0.10 Total: -56.05 kcal Atomic # 14 Polarization: 50.89 SS G_CDS: 1.78 Total: 52.67 kcal Total: -69.45 0.61 -68.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516191837.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.722 kcal (2) G-P(sol) polarization free energy of solvation -69.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds