Wall clock time and date at job start Tue Mar 31 2020 21:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47427 * 2 1 4 4 C 1.53001 * 109.47525 * 120.00733 * 2 1 3 5 5 C 1.52993 * 109.47193 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47385 * 299.99935 * 5 4 2 7 7 C 1.52991 * 109.46966 * 59.99923 * 6 5 4 8 8 H 1.09004 * 109.47364 * 60.00613 * 7 6 5 9 9 N 1.46500 * 109.47214 * 179.97438 * 7 6 5 10 10 C 1.34780 * 120.00217 * 275.00366 * 9 7 6 11 11 O 1.21348 * 120.00088 * 359.97438 * 10 9 7 12 12 C 1.49456 * 119.99878 * 179.97438 * 10 9 7 13 13 O 1.21348 * 120.00033 * 0.02562 * 12 10 9 14 14 N 1.34769 * 119.99613 * 180.27298 * 12 10 9 15 15 C 1.46502 * 119.99978 * 179.72553 * 14 12 10 16 16 C 1.53040 * 109.46084 * 275.07355 * 15 14 12 17 17 C 1.53196 * 109.31290 * 178.61458 * 16 15 14 18 18 N 1.46930 * 108.77401 * 54.62990 * 17 16 15 19 19 C 1.36934 * 120.62566 * 126.41735 * 18 17 16 20 20 H 1.08000 * 120.00311 * 332.60596 * 19 18 17 21 21 C 1.38817 * 120.00165 * 152.60671 * 19 18 17 22 22 N 1.31615 * 119.99908 * 159.33894 * 21 19 18 23 23 Si 1.86799 * 119.99497 * 339.34267 * 21 19 18 24 24 H 1.48505 * 109.47093 * 92.94240 * 23 21 19 25 25 H 1.48500 * 109.47018 * 212.93988 * 23 21 19 26 26 H 1.48494 * 109.47563 * 332.94103 * 23 21 19 27 27 C 1.46920 * 118.74074 * 306.39189 * 18 17 16 28 28 C 1.53039 * 109.46022 * 155.00012 * 15 14 12 29 29 C 1.52998 * 109.47457 * 300.00273 * 7 6 5 30 30 H 1.09000 * 109.47023 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46807 * 299.99442 * 1 2 3 32 32 H 1.08996 * 109.47083 * 59.99617 * 1 2 3 33 33 H 1.08999 * 109.47032 * 300.00099 * 4 2 1 34 34 H 1.08996 * 109.46856 * 59.99632 * 4 2 1 35 35 H 1.08996 * 109.47234 * 60.00214 * 5 4 2 36 36 H 1.09004 * 109.47349 * 179.97438 * 5 4 2 37 37 H 1.09000 * 109.47008 * 299.99823 * 6 5 4 38 38 H 1.08999 * 109.46900 * 179.97438 * 6 5 4 39 39 H 0.97001 * 120.00026 * 95.00158 * 9 7 6 40 40 H 0.97005 * 120.00520 * 359.72966 * 14 12 10 41 41 H 1.09006 * 109.45775 * 35.02919 * 15 14 12 42 42 H 1.09001 * 109.49418 * 298.56073 * 16 15 14 43 43 H 1.08998 * 109.49730 * 58.65814 * 16 15 14 44 44 H 1.08995 * 109.58349 * 294.84708 * 17 16 15 45 45 H 1.08993 * 109.70368 * 174.49069 * 17 16 15 46 46 H 0.97006 * 119.99556 * 179.97438 * 22 21 19 47 47 H 1.09004 * 109.58773 * 293.82344 * 27 18 17 48 48 H 1.09002 * 109.70423 * 173.46759 * 27 18 17 49 49 H 1.08996 * 109.50369 * 301.33793 * 28 15 14 50 50 H 1.09001 * 109.49930 * 61.40955 * 28 15 14 51 51 H 1.09005 * 109.47163 * 180.02562 * 29 7 6 52 52 H 1.09008 * 109.46648 * 299.99934 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5700 -0.7219 1.2487 6 6 4.0795 -1.4434 -0.0006 7 6 3.5695 -0.7220 -1.2497 8 1 3.9332 0.3055 -1.2499 9 7 4.0578 -1.4124 -2.4460 10 6 5.2798 -1.1265 -2.9375 11 8 5.9754 -0.2969 -2.3894 12 6 5.7781 -1.8313 -4.1576 13 8 5.0824 -2.6606 -4.7059 14 7 7.0022 -1.5494 -4.6458 15 6 7.4932 -2.2445 -5.8383 16 6 8.1228 -3.5778 -5.4282 17 6 8.6039 -4.3174 -6.6806 18 7 9.5015 -3.4332 -7.4365 19 6 10.7558 -3.8515 -7.7924 20 1 11.2681 -4.5913 -7.1951 21 6 11.3690 -3.3249 -8.9209 22 7 12.6769 -3.3926 -9.0513 23 14 10.3377 -2.5201 -10.2544 24 1 10.2523 -1.0594 -10.0002 25 1 10.9683 -2.7561 -11.5779 26 1 8.9727 -3.1047 -10.2452 27 6 9.0274 -2.0919 -7.8036 28 6 8.5417 -1.3772 -6.5386 29 6 2.0395 -0.7215 -1.2494 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.6768 -0.2077 2.1392 34 1 1.6767 -1.7490 1.2490 35 1 3.9337 0.3056 1.2486 36 1 3.9335 -1.2355 2.1389 37 1 3.7159 -2.4709 -0.0005 38 1 5.1695 -1.4433 -0.0011 39 1 3.5017 -2.0754 -2.8843 40 1 7.5583 -0.8862 -4.2077 41 1 6.6619 -2.4298 -6.5186 42 1 8.9697 -3.3922 -4.7676 43 1 7.3819 -4.1855 -4.9088 44 1 7.7470 -4.5836 -7.2994 45 1 9.1400 -5.2210 -6.3906 46 1 13.1053 -3.0249 -9.8402 47 1 8.2050 -2.1767 -8.5140 48 1 9.8421 -1.5246 -8.2537 49 1 8.0990 -0.4188 -6.8096 50 1 9.3844 -1.2119 -5.8673 51 1 1.6761 -0.2079 -2.1395 52 1 1.6758 -1.7491 -1.2493 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585711184.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:08 Heat of formation + Delta-G solvation = -73.278381 kcal Electronic energy + Delta-G solvation = -29650.990437 eV Core-core repulsion = 25649.880730 eV Total energy + Delta-G solvation = -4001.109707 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -40.91634 -39.58963 -38.43482 -37.56779 -35.23845 -34.43056 -32.64216 -32.19672 -30.50187 -30.28598 -30.04112 -26.86784 -25.90358 -24.28183 -23.00466 -22.65114 -21.98655 -21.29748 -20.67713 -20.10555 -19.68605 -18.46013 -17.03683 -16.81149 -16.08130 -15.93705 -15.72693 -15.35615 -15.01244 -14.79947 -14.67663 -14.19797 -14.16883 -13.99869 -13.85306 -13.65930 -13.20492 -13.07545 -12.93499 -12.86344 -12.43390 -12.31403 -12.05306 -12.03336 -11.87474 -11.81728 -11.62670 -11.40370 -11.05909 -10.98999 -10.86494 -10.85727 -10.68658 -10.61639 -10.34280 -10.16094 -9.88246 -9.59650 -9.49451 -9.46081 -8.99424 -8.65211 -7.02050 -5.96461 -3.32707 1.35220 2.25076 3.15493 3.30094 3.47769 3.50255 3.53083 4.14585 4.22999 4.33080 4.45017 4.51249 4.59688 4.68404 4.90769 4.92097 4.96218 4.98618 5.08514 5.10984 5.17320 5.23767 5.26434 5.35446 5.35594 5.46822 5.57700 5.59209 5.60632 5.70182 5.76620 5.77001 5.81374 5.83675 5.96144 5.97864 5.99142 6.07063 6.11949 6.23811 6.32198 6.52542 6.54594 6.61046 6.62759 6.83639 6.90833 7.33720 7.66552 7.93669 7.97048 8.31258 8.91542 9.69855 10.06847 11.19387 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.033297 B = 0.001958 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.713247 B =14293.488900 C =14494.686279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 H 0.073 0.927 4 C -0.117 4.117 5 C -0.117 4.117 6 C -0.131 4.131 7 C 0.144 3.856 8 H 0.091 0.909 9 N -0.700 5.700 10 C 0.509 3.491 11 O -0.520 6.520 12 C 0.503 3.497 13 O -0.524 6.524 14 N -0.690 5.690 15 C 0.148 3.852 16 C -0.142 4.142 17 C 0.151 3.849 18 N -0.606 5.606 19 C -0.260 4.260 20 H 0.086 0.914 21 C 0.023 3.977 22 N -0.907 5.907 23 Si 0.881 3.119 24 H -0.288 1.288 25 H -0.303 1.303 26 H -0.270 1.270 27 C 0.130 3.870 28 C -0.142 4.142 29 C -0.122 4.122 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.412 0.588 40 H 0.410 0.590 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.026 0.974 45 H 0.067 0.933 46 H 0.263 0.737 47 H 0.028 0.972 48 H 0.078 0.922 49 H 0.061 0.939 50 H 0.073 0.927 51 H 0.071 0.929 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.803 7.155 19.783 31.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 H 0.092 0.908 4 C -0.154 4.154 5 C -0.155 4.155 6 C -0.170 4.170 7 C 0.040 3.960 8 H 0.109 0.891 9 N -0.353 5.353 10 C 0.290 3.710 11 O -0.395 6.395 12 C 0.283 3.717 13 O -0.400 6.400 14 N -0.342 5.342 15 C 0.045 3.955 16 C -0.182 4.182 17 C 0.025 3.975 18 N -0.329 5.329 19 C -0.388 4.388 20 H 0.104 0.896 21 C -0.176 4.176 22 N -0.550 5.550 23 Si 0.712 3.288 24 H -0.216 1.216 25 H -0.231 1.231 26 H -0.195 1.195 27 C 0.003 3.997 28 C -0.182 4.182 29 C -0.160 4.160 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.248 0.752 40 H 0.245 0.755 41 H 0.105 0.895 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.044 0.956 45 H 0.086 0.914 46 H 0.073 0.927 47 H 0.046 0.954 48 H 0.096 0.904 49 H 0.080 0.920 50 H 0.092 0.908 51 H 0.090 0.910 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -23.621 7.160 19.653 31.551 hybrid contribution -0.428 0.498 -0.808 1.041 sum -24.049 7.658 18.845 31.498 Atomic orbital electron populations 1.21824 0.94783 1.01996 1.01871 1.21077 0.95730 0.99764 0.94136 0.90825 1.21649 0.95501 1.00840 0.97443 1.21488 0.95473 1.01079 0.97431 1.21943 1.01518 0.99683 0.93829 1.21108 0.93935 0.97416 0.83570 0.89066 1.45867 1.17106 1.43098 1.29252 1.20347 0.82487 0.83034 0.85163 1.90757 1.55806 1.32804 1.60175 1.20048 0.83029 0.83539 0.85067 1.90759 1.56458 1.33114 1.59710 1.46147 1.16021 1.42083 1.29921 1.21183 0.96871 0.92554 0.84869 1.22407 0.99952 0.95639 1.00240 1.20891 0.93086 0.93084 0.90456 1.44402 1.14293 1.09660 1.64579 1.18924 0.89265 1.24040 1.06619 0.89606 1.25290 0.95503 0.99130 0.97677 1.69838 1.07842 1.48115 1.29198 0.86974 0.81062 0.78492 0.82298 1.21604 1.23082 1.19491 1.21314 0.98000 0.86943 0.93421 1.22377 0.97915 0.97920 0.99952 1.21891 0.93451 1.01890 0.98818 0.92560 0.92489 0.92557 0.91734 0.91767 0.91632 0.91501 0.91515 0.91196 0.75191 0.75454 0.89456 0.91526 0.92161 0.95608 0.91406 0.92747 0.95382 0.90357 0.91996 0.90825 0.91025 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.19 37.16 0.34 -0.31 16 2 C -0.09 -0.45 2.72 -90.62 -0.25 -0.69 16 3 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 4 C -0.12 -0.58 5.20 -26.73 -0.14 -0.72 16 5 C -0.12 -0.70 5.92 -26.73 -0.16 -0.86 16 6 C -0.13 -0.99 5.49 -26.73 -0.15 -1.14 16 7 C 0.14 1.13 2.45 -67.94 -0.17 0.96 16 8 H 0.09 0.84 7.58 -51.93 -0.39 0.45 16 9 N -0.70 -6.62 5.07 -54.24 -0.28 -6.89 16 10 C 0.51 6.27 7.85 -11.58 -0.09 6.18 16 11 O -0.52 -7.36 16.14 5.50 0.09 -7.27 16 12 C 0.50 6.99 7.85 -11.59 -0.09 6.90 16 13 O -0.52 -8.26 16.14 5.50 0.09 -8.17 16 14 N -0.69 -9.56 5.07 -54.19 -0.27 -9.83 16 15 C 0.15 2.36 2.41 -67.89 -0.16 2.19 16 16 C -0.14 -2.39 5.65 -26.61 -0.15 -2.54 16 17 C 0.15 2.98 6.52 -3.71 -0.02 2.95 16 18 N -0.61 -14.14 2.77 -172.32 -0.48 -14.62 16 19 C -0.26 -7.18 10.03 -15.06 -0.15 -7.33 16 20 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 21 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 22 N -0.91 -27.59 13.97 55.49 0.78 -26.81 16 23 Si 0.88 22.11 24.35 -169.99 -4.14 17.98 16 24 H -0.29 -6.93 6.62 56.52 0.37 -6.56 16 25 H -0.30 -7.76 7.11 56.52 0.40 -7.35 16 26 H -0.27 -6.67 6.63 56.52 0.37 -6.29 16 27 C 0.13 2.75 4.20 -3.71 -0.02 2.73 16 28 C -0.14 -2.39 5.55 -26.61 -0.15 -2.54 16 29 C -0.12 -0.71 4.67 -26.73 -0.12 -0.83 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.41 3.48 8.08 -40.82 -0.33 3.15 16 40 H 0.41 5.19 8.07 -40.82 -0.33 4.86 16 41 H 0.09 1.48 7.58 -51.93 -0.39 1.09 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 1.33 7.93 -51.93 -0.41 0.91 16 46 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 47 H 0.03 0.59 7.08 -51.93 -0.37 0.22 16 48 H 0.08 1.81 4.50 -51.93 -0.23 1.58 16 49 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 51 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 52 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 LS Contribution 400.42 15.07 6.03 6.03 Total: -1.00 -31.61 400.42 -9.00 -40.62 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -9.26 Total: 3.46 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -1.57 Total: 5.51 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: -0.25 Total: -58.15 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: 0.18 Total: -15.44 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.14 Total: 17.98 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.61 -9.00 -40.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585711184.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.662 kcal (2) G-P(sol) polarization free energy of solvation -31.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds