Wall clock time and date at job start Tue Mar 31 2020 21:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47427 * 2 1 4 4 C 1.53001 * 109.47525 * 120.00733 * 2 1 3 5 5 C 1.52993 * 109.47193 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47385 * 299.99935 * 5 4 2 7 7 C 1.52991 * 109.46966 * 59.99923 * 6 5 4 8 8 H 1.09004 * 109.47364 * 60.00613 * 7 6 5 9 9 N 1.46500 * 109.47214 * 179.97438 * 7 6 5 10 10 C 1.34780 * 120.00217 * 275.00366 * 9 7 6 11 11 O 1.21348 * 120.00088 * 359.97438 * 10 9 7 12 12 C 1.49456 * 119.99878 * 179.97438 * 10 9 7 13 13 O 1.21348 * 120.00033 * 0.02562 * 12 10 9 14 14 N 1.34769 * 119.99613 * 180.27298 * 12 10 9 15 15 C 1.46502 * 119.99978 * 179.72553 * 14 12 10 16 16 C 1.53040 * 109.46084 * 275.07355 * 15 14 12 17 17 C 1.53196 * 109.31290 * 178.61458 * 16 15 14 18 18 N 1.46930 * 108.77401 * 54.62990 * 17 16 15 19 19 C 1.36934 * 120.62566 * 126.41735 * 18 17 16 20 20 H 1.08000 * 120.00311 * 332.60596 * 19 18 17 21 21 C 1.38817 * 120.00165 * 152.60671 * 19 18 17 22 22 N 1.31615 * 119.99908 * 159.33894 * 21 19 18 23 23 Si 1.86799 * 119.99497 * 339.34267 * 21 19 18 24 24 H 1.48505 * 109.47093 * 92.94240 * 23 21 19 25 25 H 1.48500 * 109.47018 * 212.93988 * 23 21 19 26 26 H 1.48494 * 109.47563 * 332.94103 * 23 21 19 27 27 C 1.46920 * 118.74074 * 306.39189 * 18 17 16 28 28 C 1.53039 * 109.46022 * 155.00012 * 15 14 12 29 29 C 1.52998 * 109.47457 * 300.00273 * 7 6 5 30 30 H 1.09000 * 109.47023 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46807 * 299.99442 * 1 2 3 32 32 H 1.08996 * 109.47083 * 59.99617 * 1 2 3 33 33 H 1.08999 * 109.47032 * 300.00099 * 4 2 1 34 34 H 1.08996 * 109.46856 * 59.99632 * 4 2 1 35 35 H 1.08996 * 109.47234 * 60.00214 * 5 4 2 36 36 H 1.09004 * 109.47349 * 179.97438 * 5 4 2 37 37 H 1.09000 * 109.47008 * 299.99823 * 6 5 4 38 38 H 1.08999 * 109.46900 * 179.97438 * 6 5 4 39 39 H 0.97001 * 120.00026 * 95.00158 * 9 7 6 40 40 H 0.97005 * 120.00520 * 359.72966 * 14 12 10 41 41 H 1.09006 * 109.45775 * 35.02919 * 15 14 12 42 42 H 1.09001 * 109.49418 * 298.56073 * 16 15 14 43 43 H 1.08998 * 109.49730 * 58.65814 * 16 15 14 44 44 H 1.08995 * 109.58349 * 294.84708 * 17 16 15 45 45 H 1.08993 * 109.70368 * 174.49069 * 17 16 15 46 46 H 0.97006 * 119.99556 * 179.97438 * 22 21 19 47 47 H 1.09004 * 109.58773 * 293.82344 * 27 18 17 48 48 H 1.09002 * 109.70423 * 173.46759 * 27 18 17 49 49 H 1.08996 * 109.50369 * 301.33793 * 28 15 14 50 50 H 1.09001 * 109.49930 * 61.40955 * 28 15 14 51 51 H 1.09005 * 109.47163 * 180.02562 * 29 7 6 52 52 H 1.09008 * 109.46648 * 299.99934 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5700 -0.7219 1.2487 6 6 4.0795 -1.4434 -0.0006 7 6 3.5695 -0.7220 -1.2497 8 1 3.9332 0.3055 -1.2499 9 7 4.0578 -1.4124 -2.4460 10 6 5.2798 -1.1265 -2.9375 11 8 5.9754 -0.2969 -2.3894 12 6 5.7781 -1.8313 -4.1576 13 8 5.0824 -2.6606 -4.7059 14 7 7.0022 -1.5494 -4.6458 15 6 7.4932 -2.2445 -5.8383 16 6 8.1228 -3.5778 -5.4282 17 6 8.6039 -4.3174 -6.6806 18 7 9.5015 -3.4332 -7.4365 19 6 10.7558 -3.8515 -7.7924 20 1 11.2681 -4.5913 -7.1951 21 6 11.3690 -3.3249 -8.9209 22 7 12.6769 -3.3926 -9.0513 23 14 10.3377 -2.5201 -10.2544 24 1 10.2523 -1.0594 -10.0002 25 1 10.9683 -2.7561 -11.5779 26 1 8.9727 -3.1047 -10.2452 27 6 9.0274 -2.0919 -7.8036 28 6 8.5417 -1.3772 -6.5386 29 6 2.0395 -0.7215 -1.2494 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.6768 -0.2077 2.1392 34 1 1.6767 -1.7490 1.2490 35 1 3.9337 0.3056 1.2486 36 1 3.9335 -1.2355 2.1389 37 1 3.7159 -2.4709 -0.0005 38 1 5.1695 -1.4433 -0.0011 39 1 3.5017 -2.0754 -2.8843 40 1 7.5583 -0.8862 -4.2077 41 1 6.6619 -2.4298 -6.5186 42 1 8.9697 -3.3922 -4.7676 43 1 7.3819 -4.1855 -4.9088 44 1 7.7470 -4.5836 -7.2994 45 1 9.1400 -5.2210 -6.3906 46 1 13.1053 -3.0249 -9.8402 47 1 8.2050 -2.1767 -8.5140 48 1 9.8421 -1.5246 -8.2537 49 1 8.0990 -0.4188 -6.8096 50 1 9.3844 -1.2119 -5.8673 51 1 1.6761 -0.2079 -2.1395 52 1 1.6758 -1.7491 -1.2493 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585711184.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:07 Heat of formation + Delta-G solvation = -94.819446 kcal Electronic energy + Delta-G solvation = -29651.924528 eV Core-core repulsion = 25649.880730 eV Total energy + Delta-G solvation = -4002.043798 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.91585 -40.51065 -39.41430 -38.87290 -36.41343 -35.50447 -34.06537 -33.13851 -32.02909 -31.87730 -30.76719 -27.41004 -27.26079 -25.67541 -24.50136 -23.56869 -23.09630 -22.14723 -21.46246 -21.32893 -20.66326 -19.57343 -18.67961 -18.07948 -17.33946 -16.97463 -16.78446 -16.47438 -15.96567 -15.95814 -15.48638 -15.39598 -15.33739 -15.18890 -14.88922 -14.72110 -14.50645 -14.30572 -14.12668 -13.88638 -13.69550 -13.48567 -13.27854 -12.92280 -12.77293 -12.60320 -12.55043 -12.47799 -12.29800 -12.22965 -12.04370 -11.86976 -11.82951 -11.59032 -11.48548 -11.38297 -11.35549 -11.19449 -10.80250 -10.60712 -10.28314 -10.21091 -8.97285 -8.15790 -5.48487 0.31021 1.26204 1.30698 1.43665 1.52346 2.10892 2.42193 2.56089 3.05207 3.30241 3.39341 3.63691 3.71290 3.74440 3.90681 3.93755 4.10084 4.16827 4.19028 4.28529 4.36911 4.44785 4.45210 4.51087 4.58906 4.60750 4.63931 4.76665 4.80003 4.83720 4.89446 4.95933 4.97654 4.99579 5.04762 5.05513 5.11768 5.14284 5.21965 5.25546 5.28714 5.33432 5.38496 5.40673 5.42055 5.57712 5.86542 5.91967 6.13078 6.33640 6.71097 6.90562 6.91646 7.61300 8.01244 9.03875 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.033297 B = 0.001958 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.713247 B =14293.488900 C =14494.686279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.070 0.930 4 C -0.113 4.113 5 C -0.114 4.114 6 C -0.128 4.128 7 C 0.143 3.857 8 H 0.078 0.922 9 N -0.686 5.686 10 C 0.513 3.487 11 O -0.542 6.542 12 C 0.506 3.494 13 O -0.541 6.541 14 N -0.684 5.684 15 C 0.158 3.842 16 C -0.130 4.130 17 C 0.148 3.852 18 N -0.619 5.619 19 C -0.249 4.249 20 H 0.052 0.948 21 C -0.035 4.035 22 N -0.956 5.956 23 Si 0.945 3.055 24 H -0.270 1.270 25 H -0.312 1.312 26 H -0.261 1.261 27 C 0.122 3.878 28 C -0.131 4.131 29 C -0.116 4.116 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.419 0.581 40 H 0.417 0.583 41 H 0.085 0.915 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.036 0.964 45 H 0.060 0.940 46 H 0.262 0.738 47 H 0.038 0.962 48 H 0.058 0.942 49 H 0.090 0.910 50 H 0.070 0.930 51 H 0.073 0.927 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.976 8.202 20.762 35.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 H 0.088 0.912 4 C -0.151 4.151 5 C -0.152 4.152 6 C -0.167 4.167 7 C 0.040 3.960 8 H 0.096 0.904 9 N -0.338 5.338 10 C 0.293 3.707 11 O -0.419 6.419 12 C 0.287 3.713 13 O -0.419 6.419 14 N -0.336 5.336 15 C 0.054 3.946 16 C -0.170 4.170 17 C 0.022 3.978 18 N -0.344 5.344 19 C -0.379 4.379 20 H 0.070 0.930 21 C -0.230 4.230 22 N -0.602 5.602 23 Si 0.774 3.226 24 H -0.197 1.197 25 H -0.241 1.241 26 H -0.186 1.186 27 C -0.003 4.003 28 C -0.170 4.170 29 C -0.154 4.154 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.256 0.744 40 H 0.254 0.746 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.054 0.946 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.055 0.945 48 H 0.076 0.924 49 H 0.109 0.891 50 H 0.089 0.911 51 H 0.092 0.908 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -26.867 8.218 20.675 34.883 hybrid contribution 0.525 0.106 -1.000 1.134 sum -26.341 8.324 19.676 33.916 Atomic orbital electron populations 1.21800 0.93998 1.02291 1.02156 1.21071 0.96299 0.99463 0.93729 0.91166 1.21629 0.94445 1.01222 0.97769 1.21476 0.96384 1.00626 0.96757 1.21905 1.00109 1.00234 0.94419 1.21240 0.95407 0.96487 0.82915 0.90390 1.45898 1.16050 1.42599 1.29261 1.20057 0.83173 0.82822 0.84671 1.90758 1.56578 1.33855 1.60698 1.20279 0.82656 0.83155 0.85236 1.90753 1.56902 1.33911 1.60324 1.45947 1.16260 1.42048 1.29353 1.20913 0.96340 0.91887 0.85471 1.22239 1.00013 0.96208 0.98581 1.21016 0.92602 0.92810 0.91339 1.44507 1.13499 1.11355 1.65007 1.18849 0.90687 1.22522 1.05792 0.93007 1.25912 0.96308 1.00931 0.99822 1.69970 1.09614 1.50715 1.29890 0.85935 0.79419 0.78657 0.78595 1.19658 1.24114 1.18570 1.21377 0.97487 0.85857 0.95621 1.22199 0.98213 0.98757 0.97878 1.21868 0.91509 1.02658 0.99388 0.92244 0.91999 0.92545 0.90871 0.91335 0.92071 0.90996 0.90916 0.93422 0.74389 0.74578 0.89726 0.92083 0.90966 0.94593 0.92133 0.92950 0.94459 0.92377 0.89127 0.91117 0.90814 0.90096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.19 71.98 0.66 -0.28 16 2 C -0.09 -0.70 2.72 -10.79 -0.03 -0.73 16 3 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 4 C -0.11 -0.88 5.20 30.59 0.16 -0.72 16 5 C -0.11 -1.21 5.92 30.59 0.18 -1.03 16 6 C -0.13 -1.78 5.49 30.59 0.17 -1.61 16 7 C 0.14 2.04 2.45 44.99 0.11 2.15 16 8 H 0.08 1.37 7.58 -2.39 -0.02 1.35 16 9 N -0.69 -11.82 5.07 -443.87 -2.25 -14.07 16 10 C 0.51 11.85 7.85 87.27 0.69 12.53 16 11 O -0.54 -14.72 16.14 -3.24 -0.05 -14.77 16 12 C 0.51 13.03 7.85 87.27 0.69 13.72 16 13 O -0.54 -15.87 16.14 -3.24 -0.05 -15.93 16 14 N -0.68 -17.42 5.07 -443.73 -2.25 -19.67 16 15 C 0.16 4.64 2.41 45.02 0.11 4.75 16 16 C -0.13 -4.17 5.65 30.67 0.17 -4.00 16 17 C 0.15 5.68 6.52 86.36 0.56 6.24 16 18 N -0.62 -28.56 2.77 -699.09 -1.94 -30.50 16 19 C -0.25 -14.00 10.03 84.04 0.84 -13.16 16 20 H 0.05 3.20 8.06 -2.91 -0.02 3.17 16 21 C -0.03 -2.03 5.23 84.86 0.44 -1.58 16 22 N -0.96 -59.82 13.97 21.65 0.30 -59.52 16 23 Si 0.95 45.89 24.35 68.60 1.67 47.56 16 24 H -0.27 -12.20 6.62 99.48 0.66 -11.54 16 25 H -0.31 -15.52 7.11 99.48 0.71 -14.82 16 26 H -0.26 -12.16 6.63 99.48 0.66 -11.50 16 27 C 0.12 4.95 4.20 86.36 0.36 5.31 16 28 C -0.13 -4.10 5.55 30.67 0.17 -3.93 16 29 C -0.12 -1.09 4.67 30.59 0.14 -0.95 16 30 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.06 0.35 8.14 -2.38 -0.02 0.33 16 32 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.42 6.20 8.08 -92.71 -0.75 5.45 16 40 H 0.42 9.67 8.07 -92.70 -0.75 8.92 16 41 H 0.08 2.62 7.58 -2.38 -0.02 2.60 16 42 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.06 2.37 7.93 -2.39 -0.02 2.35 16 46 H 0.26 15.56 8.31 -92.70 -0.77 14.79 16 47 H 0.04 1.46 7.08 -2.38 -0.02 1.44 16 48 H 0.06 2.60 4.50 -2.39 -0.01 2.59 16 49 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 50 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 51 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 52 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 Total: -1.00 -68.52 400.42 0.18 -68.34 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -0.68 Total: 21.84 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 5.43 Total: 16.72 kcal Atomic # 7 Polarization: -117.62 SS G_CDS: -6.13 Total: -123.76 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.10 Total: -30.70 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.67 Total: 47.56 kcal Total: -68.52 0.18 -68.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585711184.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.483 kcal (2) G-P(sol) polarization free energy of solvation -68.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds