Wall clock time and date at job start Tue Mar 31 2020 21:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47154 * 2 1 4 4 C 1.52996 * 109.47346 * 239.99951 * 2 1 3 5 5 C 1.53001 * 109.47320 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47333 * 59.99695 * 5 4 2 7 7 C 1.52996 * 109.47166 * 300.00399 * 6 5 4 8 8 H 1.09001 * 109.47579 * 179.97438 * 7 6 5 9 9 N 1.46503 * 109.47064 * 299.99991 * 7 6 5 10 10 C 1.34779 * 119.99365 * 274.99681 * 9 7 6 11 11 O 1.21348 * 120.00492 * 0.02562 * 10 9 7 12 12 C 1.49451 * 119.99728 * 179.97438 * 10 9 7 13 13 O 1.21356 * 120.00014 * 0.02562 * 12 10 9 14 14 N 1.34776 * 120.00280 * 180.02562 * 12 10 9 15 15 C 1.46495 * 120.00079 * 180.02562 * 14 12 10 16 16 C 1.53045 * 109.45935 * 155.00151 * 15 14 12 17 17 C 1.53188 * 109.31551 * 181.38585 * 16 15 14 18 18 N 1.46928 * 108.77589 * 305.36503 * 17 16 15 19 19 C 1.36933 * 120.63112 * 233.58169 * 18 17 16 20 20 H 1.07999 * 120.00150 * 31.10101 * 19 18 17 21 21 C 1.38818 * 120.00011 * 211.08933 * 19 18 17 22 22 N 1.31616 * 119.99761 * 198.72795 * 21 19 18 23 23 Si 1.86794 * 119.99952 * 18.73139 * 21 19 18 24 24 H 1.48499 * 109.47303 * 269.99857 * 23 21 19 25 25 H 1.48510 * 109.47017 * 29.99668 * 23 21 19 26 26 H 1.48507 * 109.47212 * 149.99530 * 23 21 19 27 27 C 1.46930 * 118.73850 * 53.85880 * 18 17 16 28 28 C 1.53037 * 109.46101 * 275.06709 * 15 14 12 29 29 C 1.53001 * 109.47320 * 59.99593 * 7 6 5 30 30 H 1.09003 * 109.47428 * 299.99709 * 1 2 3 31 31 H 1.08996 * 109.47309 * 60.00051 * 1 2 3 32 32 H 1.09005 * 109.47065 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46881 * 299.99393 * 4 2 1 34 34 H 1.08996 * 109.46919 * 59.99759 * 4 2 1 35 35 H 1.08996 * 109.47595 * 179.97438 * 5 4 2 36 36 H 1.09004 * 109.47253 * 300.00094 * 5 4 2 37 37 H 1.08992 * 109.47478 * 180.02562 * 6 5 4 38 38 H 1.09004 * 109.46625 * 60.00014 * 6 5 4 39 39 H 0.96995 * 120.00341 * 94.99820 * 9 7 6 40 40 H 0.97002 * 119.99448 * 0.02562 * 14 12 10 41 41 H 1.08996 * 109.45040 * 35.04005 * 15 14 12 42 42 H 1.09000 * 109.49792 * 61.43377 * 16 15 14 43 43 H 1.08997 * 109.52343 * 301.35175 * 16 15 14 44 44 H 1.09003 * 109.59246 * 185.57692 * 17 16 15 45 45 H 1.09005 * 109.70497 * 65.22106 * 17 16 15 46 46 H 0.96998 * 120.00613 * 354.95764 * 22 21 19 47 47 H 1.09002 * 109.58504 * 65.92621 * 27 18 17 48 48 H 1.08995 * 109.58550 * 186.35366 * 27 18 17 49 49 H 1.08996 * 109.49918 * 298.56374 * 28 15 14 50 50 H 1.09000 * 109.49541 * 58.63728 * 28 15 14 51 51 H 1.09004 * 109.47253 * 59.99906 * 29 7 6 52 52 H 1.09009 * 109.47411 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7207 -1.2495 6 6 4.0806 -1.4415 -0.0002 7 6 3.5705 -0.7202 1.2490 8 1 3.9338 -1.2340 2.1390 9 7 4.0583 0.6612 1.2486 10 6 5.2802 0.9444 1.7417 11 8 5.9766 0.0552 2.1854 12 6 5.7781 2.3536 1.7408 13 8 5.0819 3.2428 1.2966 14 7 7.0002 2.6369 2.2334 15 6 7.4880 4.0182 2.2330 16 6 8.5330 4.1902 3.3378 17 6 9.0154 5.6440 3.3571 18 7 9.4925 6.0019 2.0143 19 6 10.7461 6.5227 1.8350 20 1 11.5498 6.2359 2.4970 21 6 10.9841 7.4192 0.8023 22 7 12.2152 7.6375 0.3909 23 14 9.5573 8.3159 -0.0035 24 1 9.0522 7.5152 -1.1477 25 1 8.4678 8.5044 0.9879 26 1 10.0174 9.6409 -0.4914 27 6 8.5965 5.7959 0.8681 28 6 8.1208 4.3352 0.8761 29 6 2.0405 -0.7208 1.2493 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6767 -1.7489 -1.2491 34 1 1.6766 -0.2074 -2.1391 35 1 3.9334 -1.2349 -2.1392 36 1 3.9330 0.3072 -1.2497 37 1 5.1705 -1.4407 -0.0002 38 1 3.7176 -2.4693 0.0000 39 1 3.5018 1.3719 0.8936 40 1 7.5568 1.9260 2.5881 41 1 6.6546 4.6974 2.4126 42 1 9.3780 3.5291 3.1454 43 1 8.0886 3.9416 4.3015 44 1 9.8296 5.7495 4.0742 45 1 8.1924 6.3006 3.6395 46 1 12.9617 7.2288 0.8562 47 1 7.7384 6.4630 0.9507 48 1 9.1341 6.0016 -0.0574 49 1 8.9697 3.6727 0.7070 50 1 7.3826 4.1894 0.0875 51 1 1.6775 -1.7486 1.2495 52 1 1.6771 -0.2065 2.1391 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585711187.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:27 Heat of formation + Delta-G solvation = -97.180285 kcal Electronic energy + Delta-G solvation = -30187.497356 eV Core-core repulsion = 26185.351185 eV Total energy + Delta-G solvation = -4002.146171 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -41.98515 -40.62801 -39.40142 -38.85468 -36.36683 -35.17471 -34.14353 -33.11238 -31.98589 -31.80492 -31.00484 -27.30344 -27.22574 -25.48978 -24.45361 -23.56351 -23.17991 -22.22366 -21.64396 -21.35594 -20.07055 -19.76611 -19.22124 -17.95660 -17.25648 -17.02219 -16.57243 -16.36254 -16.18789 -16.06501 -15.68197 -15.36540 -15.34317 -15.24204 -14.88073 -14.72390 -14.41665 -14.21343 -14.12160 -13.78784 -13.41067 -13.33525 -13.24199 -13.12729 -12.89793 -12.72474 -12.62907 -12.50280 -12.42493 -12.07820 -11.90297 -11.81145 -11.64324 -11.57367 -11.46463 -11.26352 -11.15786 -11.01683 -10.77418 -10.61056 -10.27571 -10.20096 -9.13125 -8.47221 -5.58061 0.31066 1.28166 1.42103 1.54818 1.72818 2.10927 2.52105 2.58352 3.08791 3.33308 3.40767 3.69163 3.72618 3.73152 3.79138 3.87182 4.11861 4.16154 4.19786 4.26323 4.42684 4.43731 4.45845 4.51718 4.59663 4.63936 4.64939 4.75901 4.78934 4.83080 4.90271 4.93617 4.93972 5.00315 5.02157 5.06327 5.11331 5.11855 5.22666 5.24585 5.26578 5.35321 5.36706 5.40648 5.44977 5.54931 5.79129 5.91839 6.26547 6.32730 6.70635 6.90184 6.91548 7.54742 8.06802 8.85887 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020043 B = 0.002349 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.694208 B =11914.931422 C =12428.027881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 H 0.060 0.940 4 C -0.110 4.110 5 C -0.121 4.121 6 C -0.128 4.128 7 C 0.141 3.859 8 H 0.085 0.915 9 N -0.682 5.682 10 C 0.512 3.488 11 O -0.541 6.541 12 C 0.504 3.496 13 O -0.543 6.543 14 N -0.684 5.684 15 C 0.158 3.842 16 C -0.128 4.128 17 C 0.143 3.857 18 N -0.621 5.621 19 C -0.328 4.328 20 H 0.034 0.966 21 C -0.070 4.070 22 N -0.958 5.958 23 Si 1.104 2.896 24 H -0.273 1.273 25 H -0.265 1.265 26 H -0.307 1.307 27 C 0.123 3.877 28 C -0.132 4.132 29 C -0.115 4.115 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.093 0.907 39 H 0.415 0.585 40 H 0.417 0.583 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.095 0.905 44 H 0.059 0.941 45 H 0.039 0.961 46 H 0.248 0.752 47 H 0.041 0.959 48 H 0.055 0.945 49 H 0.058 0.942 50 H 0.066 0.934 51 H 0.099 0.901 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.450 -21.053 1.376 33.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 H 0.078 0.922 4 C -0.147 4.147 5 C -0.159 4.159 6 C -0.166 4.166 7 C 0.038 3.962 8 H 0.104 0.896 9 N -0.335 5.335 10 C 0.292 3.708 11 O -0.419 6.419 12 C 0.284 3.716 13 O -0.420 6.420 14 N -0.336 5.336 15 C 0.054 3.946 16 C -0.167 4.167 17 C 0.018 3.982 18 N -0.346 5.346 19 C -0.458 4.458 20 H 0.052 0.948 21 C -0.265 4.265 22 N -0.600 5.600 23 Si 0.930 3.070 24 H -0.200 1.200 25 H -0.190 1.190 26 H -0.235 1.235 27 C -0.002 4.002 28 C -0.173 4.173 29 C -0.152 4.152 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.253 0.747 40 H 0.254 0.746 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.114 0.886 44 H 0.077 0.923 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.058 0.942 48 H 0.073 0.927 49 H 0.076 0.924 50 H 0.085 0.915 51 H 0.118 0.882 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -26.851 -20.036 0.213 33.503 hybrid contribution 1.479 -0.755 1.133 2.011 sum -25.372 -20.791 1.346 32.830 Atomic orbital electron populations 1.21790 0.93969 1.02452 1.01970 1.21160 0.96513 0.99091 0.94736 0.92162 1.21586 0.94189 1.01438 0.97512 1.21516 0.96639 1.00125 0.97587 1.21906 1.00092 1.00425 0.94211 1.21264 0.95484 0.80259 0.99238 0.89645 1.45975 1.15896 1.11763 1.59890 1.20018 0.83259 0.88417 0.79080 1.90749 1.56509 1.48092 1.46535 1.20368 0.82714 0.89448 0.79046 1.90756 1.56910 1.48413 1.45948 1.45938 1.16405 1.11021 1.60211 1.20911 0.96660 0.81564 0.95450 1.22177 0.97741 0.98520 0.98252 1.21071 0.97632 0.93257 0.86269 1.44496 1.13591 1.74337 1.02202 1.20100 0.86467 1.21678 1.17520 0.94832 1.27414 1.03155 0.97006 0.98940 1.71009 0.99213 1.50074 1.39744 0.83263 0.72850 0.74843 0.76045 1.19989 1.18983 1.23526 1.21471 0.93076 0.94788 0.90907 1.22332 0.99845 0.97645 0.97432 1.21892 0.91427 1.03320 0.98584 0.92493 0.92591 0.91740 0.90595 0.91747 0.91546 0.93480 0.93486 0.88869 0.74663 0.74573 0.89581 0.91751 0.88611 0.92279 0.94259 0.94224 0.94161 0.92711 0.92360 0.91507 0.88246 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.19 71.98 0.66 -0.42 16 2 C -0.10 -0.88 2.55 -10.80 -0.03 -0.91 16 3 H 0.06 0.68 6.50 -2.39 -0.02 0.67 16 4 C -0.11 -1.03 5.20 30.59 0.16 -0.87 16 5 C -0.12 -1.56 5.77 30.60 0.18 -1.38 16 6 C -0.13 -1.73 5.60 30.59 0.17 -1.56 16 7 C 0.14 1.93 2.78 44.99 0.13 2.05 16 8 H 0.09 1.33 7.58 -2.39 -0.02 1.32 16 9 N -0.68 -12.08 4.23 -443.86 -1.88 -13.95 16 10 C 0.51 12.00 7.85 87.27 0.69 12.68 16 11 O -0.54 -14.59 16.14 -3.24 -0.05 -14.64 16 12 C 0.50 13.34 7.85 87.27 0.69 14.03 16 13 O -0.54 -16.53 16.14 -3.26 -0.05 -16.59 16 14 N -0.68 -17.65 5.07 -443.74 -2.25 -19.90 16 15 C 0.16 4.71 2.41 45.02 0.11 4.82 16 16 C -0.13 -3.71 5.55 30.67 0.17 -3.54 16 17 C 0.14 5.33 6.51 86.36 0.56 5.89 16 18 N -0.62 -29.06 2.72 -698.23 -1.90 -30.95 16 19 C -0.33 -18.62 9.88 84.04 0.83 -17.79 16 20 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 21 C -0.07 -4.16 5.24 84.86 0.44 -3.72 16 22 N -0.96 -61.37 13.70 21.65 0.30 -61.07 16 23 Si 1.10 53.79 24.73 68.60 1.70 55.48 16 24 H -0.27 -12.34 6.56 99.48 0.65 -11.68 16 25 H -0.26 -11.94 6.80 99.48 0.68 -11.26 16 26 H -0.31 -15.23 7.11 99.48 0.71 -14.52 16 27 C 0.12 5.24 4.23 86.51 0.37 5.60 16 28 C -0.13 -4.65 5.67 30.82 0.17 -4.48 16 29 C -0.11 -1.00 4.89 30.60 0.15 -0.85 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 33 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.05 0.76 7.60 -2.39 -0.02 0.74 16 37 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.42 6.91 6.34 -92.71 -0.59 6.32 16 40 H 0.42 9.66 8.07 -92.71 -0.75 8.91 16 41 H 0.09 2.68 7.58 -2.39 -0.02 2.66 16 42 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.06 2.25 7.93 -2.39 -0.02 2.23 16 45 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 46 H 0.25 16.01 8.73 -92.71 -0.81 15.20 16 47 H 0.04 1.64 7.10 -2.39 -0.02 1.63 16 48 H 0.05 2.57 4.76 -2.39 -0.01 2.56 16 49 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 50 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 51 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 52 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 Total: -1.00 -70.12 396.76 0.77 -69.35 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -0.54 Total: 22.70 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 5.44 Total: 9.57 kcal Atomic # 7 Polarization: -120.15 SS G_CDS: -5.72 Total: -125.87 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.11 Total: -31.23 kcal Atomic # 14 Polarization: 53.79 SS G_CDS: 1.70 Total: 55.48 kcal Total: -70.12 0.77 -69.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585711187.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.828 kcal (2) G-P(sol) polarization free energy of solvation -70.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds