Wall clock time and date at job start Tue Mar 31 2020 22:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.52531 * 2 1 4 4 C 1.53072 * 109.62653 * 239.97233 * 2 1 3 5 5 C 1.53038 * 109.66327 * 178.82881 * 4 2 1 6 6 C 1.53198 * 109.31081 * 61.29810 * 5 4 2 7 7 N 1.46925 * 108.77602 * 305.36824 * 6 5 4 8 8 C 1.34777 * 120.63001 * 233.63258 * 7 6 5 9 9 O 1.21349 * 120.00306 * 171.89614 * 8 7 6 10 10 C 1.49448 * 119.99834 * 351.88839 * 8 7 6 11 11 O 1.21346 * 120.00115 * 353.48984 * 10 8 7 12 12 N 1.34781 * 120.00140 * 173.49151 * 10 8 7 13 13 C 1.46490 * 120.00323 * 180.02562 * 12 10 8 14 14 C 1.53046 * 109.46197 * 275.06829 * 13 12 10 15 15 C 1.53193 * 109.31253 * 178.61186 * 14 13 12 16 16 N 1.46926 * 108.77326 * 54.63742 * 15 14 13 17 17 C 1.36931 * 120.63060 * 126.41401 * 16 15 14 18 18 H 1.07996 * 120.00319 * 324.29671 * 17 16 15 19 19 C 1.38819 * 120.00161 * 144.30266 * 17 16 15 20 20 N 1.31621 * 119.99910 * 346.31176 * 19 17 16 21 21 Si 1.86798 * 120.00240 * 166.31377 * 19 17 16 22 22 H 1.48502 * 109.47061 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47096 * 119.99602 * 21 19 17 24 24 H 1.48495 * 109.47159 * 240.00110 * 21 19 17 25 25 C 1.46925 * 118.73971 * 306.38445 * 16 15 14 26 26 C 1.53044 * 109.46284 * 154.99812 * 13 12 10 27 27 C 1.46925 * 118.74017 * 53.60794 * 7 6 5 28 28 H 1.09006 * 109.58595 * 186.60772 * 27 7 6 29 29 C 1.52998 * 109.58734 * 66.32215 * 27 7 6 30 30 H 1.09005 * 109.47726 * 299.92205 * 1 2 3 31 31 H 1.08999 * 109.47403 * 59.92063 * 1 2 3 32 32 H 1.08997 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.44852 * 58.73865 * 4 2 1 34 34 H 1.09006 * 109.33139 * 298.85074 * 4 2 1 35 35 H 1.09000 * 109.49268 * 301.35373 * 5 4 2 36 36 H 1.08990 * 109.52391 * 181.26654 * 5 4 2 37 37 H 1.08995 * 109.58371 * 185.57900 * 6 5 4 38 38 H 1.09002 * 109.70251 * 65.22262 * 6 5 4 39 39 H 0.97003 * 119.99322 * 359.97438 * 12 10 8 40 40 H 1.09001 * 109.46239 * 35.02830 * 13 12 10 41 41 H 1.08998 * 109.49097 * 298.56347 * 14 13 12 42 42 H 1.09005 * 109.49381 * 58.66112 * 14 13 12 43 43 H 1.08996 * 109.58583 * 294.84939 * 15 14 13 44 44 H 1.09000 * 109.69901 * 174.49220 * 15 14 13 45 45 H 0.97000 * 120.00012 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.59004 * 293.82649 * 25 16 15 47 47 H 1.09002 * 109.58960 * 173.39627 * 25 16 15 48 48 H 1.08996 * 109.49630 * 301.34085 * 26 13 12 49 49 H 1.09000 * 109.49252 * 61.40253 * 26 13 12 50 50 H 1.08994 * 109.47433 * 60.28484 * 29 27 7 51 51 H 1.09004 * 109.47158 * 180.28741 * 29 27 7 52 52 H 1.09002 * 109.46809 * 300.27895 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0441 -0.7215 -1.2483 5 6 3.5742 -0.6965 -1.2640 6 6 4.1055 -1.4300 -0.0284 7 7 3.5044 -0.8320 1.1715 8 6 4.2806 -0.3906 2.1811 9 8 3.7871 0.2323 3.0982 10 6 5.7490 -0.6684 2.1712 11 8 6.2243 -1.3898 1.3192 12 7 6.5454 -0.1176 3.1088 13 6 7.9848 -0.3894 3.0988 14 6 8.2615 -1.6990 3.8409 15 6 9.7635 -1.9977 3.7985 16 7 10.4915 -0.8375 4.3301 17 6 11.3949 -0.9873 5.3481 18 1 11.2130 -1.7103 6.1295 19 6 12.5446 -0.2097 5.3760 20 7 12.9058 0.4693 4.3079 21 14 13.5789 -0.1271 6.9292 22 1 12.9621 -0.9755 7.9804 23 1 14.9495 -0.6191 6.6380 24 1 13.6478 1.2782 7.4039 25 6 10.2323 0.4864 3.7481 26 6 8.7251 0.7573 3.7910 27 6 2.0413 -0.7237 1.2496 28 1 1.7637 -0.1577 2.1389 29 6 1.4265 -2.1230 1.3196 30 1 -0.3635 0.5126 0.8907 31 1 -0.3634 0.5150 -0.8892 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6636 -0.2215 -2.1391 34 1 1.6978 -1.7550 -1.2360 35 1 3.9213 0.3366 -1.2509 36 1 3.9373 -1.1910 -2.1648 37 1 5.1899 -1.3301 0.0176 38 1 3.8378 -2.4852 -0.0840 39 1 6.1654 0.4594 3.7897 40 1 8.3310 -0.4758 2.0689 41 1 7.9384 -1.6049 4.8776 42 1 7.7154 -2.5113 3.3613 43 1 10.0705 -2.1815 2.7690 44 1 9.9808 -2.8756 4.4069 45 1 13.7094 1.0123 4.3272 46 1 10.5776 0.5052 2.7144 47 1 10.7569 1.2482 4.3247 48 1 8.5088 1.6933 3.2759 49 1 8.3971 0.8286 4.8280 50 1 1.7953 -2.6380 2.2065 51 1 0.3408 -2.0406 1.3724 52 1 1.7051 -2.6871 0.4295 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588123780.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:50 Heat of formation + Delta-G solvation = -49.493655 kcal Electronic energy + Delta-G solvation = -30535.197871 eV Core-core repulsion = 26535.119547 eV Total energy + Delta-G solvation = -4000.078324 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -41.17519 -39.46905 -38.03718 -37.40619 -34.85111 -33.87473 -32.78013 -32.15068 -30.20135 -29.59693 -29.26619 -26.68648 -26.02803 -24.76041 -23.23330 -22.56481 -22.29549 -21.61193 -20.35086 -19.47381 -18.78744 -17.64825 -17.11476 -16.67868 -16.25567 -16.03076 -15.52831 -15.10077 -14.80363 -14.60256 -14.36606 -14.05219 -13.85737 -13.65974 -13.57613 -13.40271 -13.15907 -13.02572 -12.97480 -12.67283 -12.45536 -12.44625 -12.00213 -11.93807 -11.54557 -11.47492 -11.29627 -11.17482 -11.06402 -10.89763 -10.79317 -10.76877 -10.55126 -10.49092 -10.32186 -10.09626 -9.90265 -9.62063 -9.17651 -8.92680 -8.82089 -8.50762 -6.60619 -5.82898 -3.33259 1.40739 2.27269 3.17976 3.34869 3.43183 3.45507 3.46595 4.22147 4.41573 4.42465 4.46739 4.54038 4.73510 4.85323 5.00134 5.05659 5.12727 5.25752 5.27469 5.30553 5.34728 5.39706 5.44827 5.45921 5.51505 5.57613 5.60920 5.65702 5.76107 5.77522 5.81310 5.85108 5.90035 6.02567 6.12258 6.16231 6.24417 6.31593 6.45627 6.47964 6.53443 6.74076 6.80205 6.94446 6.98330 7.23794 7.31967 7.52794 7.73627 7.79854 8.05521 8.46903 9.18725 9.79172 10.40791 11.25707 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.032539 B = 0.002177 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.296653 B =12859.739358 C =13008.802845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 H 0.074 0.926 4 C -0.118 4.118 5 C -0.135 4.135 6 C 0.065 3.935 7 N -0.578 5.578 8 C 0.509 3.491 9 O -0.526 6.526 10 C 0.505 3.495 11 O -0.516 6.516 12 N -0.687 5.687 13 C 0.148 3.852 14 C -0.140 4.140 15 C 0.148 3.852 16 N -0.591 5.591 17 C -0.258 4.258 18 H 0.063 0.937 19 C 0.009 3.991 20 N -0.899 5.899 21 Si 0.902 3.098 22 H -0.276 1.276 23 H -0.289 1.289 24 H -0.288 1.288 25 C 0.179 3.821 26 C -0.148 4.148 27 C 0.137 3.863 28 H 0.100 0.900 29 C -0.164 4.164 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.145 0.855 38 H 0.067 0.933 39 H 0.408 0.592 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.021 0.979 44 H 0.058 0.942 45 H 0.254 0.746 46 H 0.024 0.976 47 H 0.082 0.918 48 H 0.056 0.944 49 H 0.063 0.937 50 H 0.058 0.942 51 H 0.072 0.928 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.062 -1.533 -10.579 26.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 H 0.092 0.908 4 C -0.155 4.155 5 C -0.173 4.173 6 C -0.056 4.056 7 N -0.311 5.311 8 C 0.291 3.709 9 O -0.402 6.402 10 C 0.286 3.714 11 O -0.394 6.394 12 N -0.337 5.337 13 C 0.046 3.954 14 C -0.180 4.180 15 C 0.021 3.979 16 N -0.314 5.314 17 C -0.388 4.388 18 H 0.080 0.920 19 C -0.190 4.190 20 N -0.542 5.542 21 Si 0.732 3.268 22 H -0.201 1.201 23 H -0.216 1.216 24 H -0.215 1.215 25 C 0.053 3.947 26 C -0.188 4.188 27 C 0.034 3.966 28 H 0.118 0.882 29 C -0.222 4.222 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.161 0.839 38 H 0.085 0.915 39 H 0.244 0.756 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.039 0.961 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.042 0.958 47 H 0.100 0.900 48 H 0.075 0.925 49 H 0.081 0.919 50 H 0.077 0.923 51 H 0.091 0.909 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -23.793 -1.612 -10.689 26.134 hybrid contribution 0.277 0.361 0.987 1.087 sum -23.516 -1.251 -9.702 25.470 Atomic orbital electron populations 1.21871 0.94276 1.02262 1.02064 1.21478 0.96001 0.99878 0.94555 0.90769 1.21662 0.95674 1.00927 0.97271 1.21942 0.95628 1.01509 0.98248 1.22917 1.03764 0.96558 0.82334 1.48031 1.06228 1.59032 1.17852 1.20308 0.87999 0.79813 0.82732 1.90735 1.75107 1.38697 1.35638 1.20056 0.87199 0.81510 0.82647 1.90467 1.75455 1.37283 1.36180 1.46269 1.09250 1.48186 1.30028 1.21250 0.76392 0.96565 1.01238 1.22409 0.99954 0.95809 0.99863 1.20885 0.88529 0.91474 0.96963 1.44008 1.46165 1.00864 1.40332 1.19142 0.97835 1.21813 1.00032 0.91953 1.25271 0.96215 1.00702 0.96850 1.70013 1.24878 1.32718 1.26620 0.86238 0.80082 0.77510 0.83006 1.20138 1.21606 1.21500 1.20652 0.87865 0.88836 0.97391 1.22574 1.00665 0.95665 0.99898 1.21302 0.78602 0.97232 0.99475 0.88210 1.22213 1.01137 0.96244 1.02592 0.92367 0.92336 0.92019 0.91747 0.91479 0.91663 0.90459 0.83864 0.91456 0.75597 0.89459 0.92084 0.92612 0.96096 0.92384 0.93582 0.95763 0.90013 0.92509 0.91858 0.92297 0.90881 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 8.71 37.15 0.32 -0.52 16 2 C -0.10 -0.75 2.65 -90.48 -0.24 -0.99 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.12 -0.81 4.97 -26.67 -0.13 -0.94 16 5 C -0.14 -1.09 6.09 -26.61 -0.16 -1.25 16 6 C 0.07 0.66 5.59 -3.71 -0.02 0.64 16 7 N -0.58 -6.52 2.68 -165.72 -0.44 -6.97 16 8 C 0.51 7.00 7.74 -11.59 -0.09 6.91 16 9 O -0.53 -8.12 15.92 5.50 0.09 -8.03 16 10 C 0.51 7.44 7.71 -11.58 -0.09 7.35 16 11 O -0.52 -8.22 12.82 5.50 0.07 -8.15 16 12 N -0.69 -10.10 5.07 -54.20 -0.27 -10.38 16 13 C 0.15 2.50 2.41 -67.89 -0.16 2.34 16 14 C -0.14 -2.50 5.65 -26.61 -0.15 -2.65 16 15 C 0.15 3.13 6.52 -3.71 -0.02 3.10 16 16 N -0.59 -14.52 2.95 -172.32 -0.51 -15.03 16 17 C -0.26 -6.99 9.51 -15.06 -0.14 -7.13 16 18 H 0.06 1.67 7.87 -52.49 -0.41 1.26 16 19 C 0.01 0.26 4.95 -17.43 -0.09 0.17 16 20 N -0.90 -25.74 11.58 55.49 0.64 -25.10 16 21 Si 0.90 21.39 29.58 -169.99 -5.03 16.36 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 C 0.18 4.10 5.25 -3.71 -0.02 4.08 16 26 C -0.15 -2.65 5.55 -26.61 -0.15 -2.80 16 27 C 0.14 1.27 2.80 -67.60 -0.19 1.08 16 28 H 0.10 1.07 7.00 -51.93 -0.36 0.71 16 29 C -0.16 -1.26 8.52 37.16 0.32 -0.94 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.31 6.36 -51.93 -0.33 -0.02 16 33 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 34 H 0.07 0.43 6.51 -51.93 -0.34 0.09 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.14 1.76 4.27 -55.01 -0.24 1.53 16 38 H 0.07 0.64 7.50 -51.93 -0.39 0.25 16 39 H 0.41 5.55 8.09 -40.82 -0.33 5.22 16 40 H 0.09 1.59 7.58 -51.93 -0.39 1.19 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 45 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.08 2.08 6.56 -51.93 -0.34 1.74 16 48 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 50 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 51 H 0.07 0.44 6.38 -51.93 -0.33 0.11 16 52 H 0.06 0.46 5.75 -51.93 -0.30 0.16 16 LS Contribution 392.47 15.07 5.91 5.91 Total: -1.00 -29.91 392.47 -9.36 -39.27 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -8.81 Total: 3.65 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -1.02 Total: 8.45 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -0.58 Total: -57.47 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: 0.16 Total: -16.18 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.91 -9.36 -39.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588123780.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.225 kcal (2) G-P(sol) polarization free energy of solvation -29.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds