Wall clock time and date at job start Tue Mar 31 2020 22:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.52531 * 2 1 4 4 C 1.53072 * 109.62653 * 239.97233 * 2 1 3 5 5 C 1.53038 * 109.66327 * 178.82881 * 4 2 1 6 6 C 1.53198 * 109.31081 * 61.29810 * 5 4 2 7 7 N 1.46925 * 108.77602 * 305.36824 * 6 5 4 8 8 C 1.34777 * 120.63001 * 233.63258 * 7 6 5 9 9 O 1.21349 * 120.00306 * 171.89614 * 8 7 6 10 10 C 1.49448 * 119.99834 * 351.88839 * 8 7 6 11 11 O 1.21346 * 120.00115 * 353.48984 * 10 8 7 12 12 N 1.34781 * 120.00140 * 173.49151 * 10 8 7 13 13 C 1.46490 * 120.00323 * 180.02562 * 12 10 8 14 14 C 1.53046 * 109.46197 * 275.06829 * 13 12 10 15 15 C 1.53193 * 109.31253 * 178.61186 * 14 13 12 16 16 N 1.46926 * 108.77326 * 54.63742 * 15 14 13 17 17 C 1.36931 * 120.63060 * 126.41401 * 16 15 14 18 18 H 1.07996 * 120.00319 * 324.29671 * 17 16 15 19 19 C 1.38819 * 120.00161 * 144.30266 * 17 16 15 20 20 N 1.31621 * 119.99910 * 346.31176 * 19 17 16 21 21 Si 1.86798 * 120.00240 * 166.31377 * 19 17 16 22 22 H 1.48502 * 109.47061 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47096 * 119.99602 * 21 19 17 24 24 H 1.48495 * 109.47159 * 240.00110 * 21 19 17 25 25 C 1.46925 * 118.73971 * 306.38445 * 16 15 14 26 26 C 1.53044 * 109.46284 * 154.99812 * 13 12 10 27 27 C 1.46925 * 118.74017 * 53.60794 * 7 6 5 28 28 H 1.09006 * 109.58595 * 186.60772 * 27 7 6 29 29 C 1.52998 * 109.58734 * 66.32215 * 27 7 6 30 30 H 1.09005 * 109.47726 * 299.92205 * 1 2 3 31 31 H 1.08999 * 109.47403 * 59.92063 * 1 2 3 32 32 H 1.08997 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.44852 * 58.73865 * 4 2 1 34 34 H 1.09006 * 109.33139 * 298.85074 * 4 2 1 35 35 H 1.09000 * 109.49268 * 301.35373 * 5 4 2 36 36 H 1.08990 * 109.52391 * 181.26654 * 5 4 2 37 37 H 1.08995 * 109.58371 * 185.57900 * 6 5 4 38 38 H 1.09002 * 109.70251 * 65.22262 * 6 5 4 39 39 H 0.97003 * 119.99322 * 359.97438 * 12 10 8 40 40 H 1.09001 * 109.46239 * 35.02830 * 13 12 10 41 41 H 1.08998 * 109.49097 * 298.56347 * 14 13 12 42 42 H 1.09005 * 109.49381 * 58.66112 * 14 13 12 43 43 H 1.08996 * 109.58583 * 294.84939 * 15 14 13 44 44 H 1.09000 * 109.69901 * 174.49220 * 15 14 13 45 45 H 0.97000 * 120.00012 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.59004 * 293.82649 * 25 16 15 47 47 H 1.09002 * 109.58960 * 173.39627 * 25 16 15 48 48 H 1.08996 * 109.49630 * 301.34085 * 26 13 12 49 49 H 1.09000 * 109.49252 * 61.40253 * 26 13 12 50 50 H 1.08994 * 109.47433 * 60.28484 * 29 27 7 51 51 H 1.09004 * 109.47158 * 180.28741 * 29 27 7 52 52 H 1.09002 * 109.46809 * 300.27895 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0441 -0.7215 -1.2483 5 6 3.5742 -0.6965 -1.2640 6 6 4.1055 -1.4300 -0.0284 7 7 3.5044 -0.8320 1.1715 8 6 4.2806 -0.3906 2.1811 9 8 3.7871 0.2323 3.0982 10 6 5.7490 -0.6684 2.1712 11 8 6.2243 -1.3898 1.3192 12 7 6.5454 -0.1176 3.1088 13 6 7.9848 -0.3894 3.0988 14 6 8.2615 -1.6990 3.8409 15 6 9.7635 -1.9977 3.7985 16 7 10.4915 -0.8375 4.3301 17 6 11.3949 -0.9873 5.3481 18 1 11.2130 -1.7103 6.1295 19 6 12.5446 -0.2097 5.3760 20 7 12.9058 0.4693 4.3079 21 14 13.5789 -0.1271 6.9292 22 1 12.9621 -0.9755 7.9804 23 1 14.9495 -0.6191 6.6380 24 1 13.6478 1.2782 7.4039 25 6 10.2323 0.4864 3.7481 26 6 8.7251 0.7573 3.7910 27 6 2.0413 -0.7237 1.2496 28 1 1.7637 -0.1577 2.1389 29 6 1.4265 -2.1230 1.3196 30 1 -0.3635 0.5126 0.8907 31 1 -0.3634 0.5150 -0.8892 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6636 -0.2215 -2.1391 34 1 1.6978 -1.7550 -1.2360 35 1 3.9213 0.3366 -1.2509 36 1 3.9373 -1.1910 -2.1648 37 1 5.1899 -1.3301 0.0176 38 1 3.8378 -2.4852 -0.0840 39 1 6.1654 0.4594 3.7897 40 1 8.3310 -0.4758 2.0689 41 1 7.9384 -1.6049 4.8776 42 1 7.7154 -2.5113 3.3613 43 1 10.0705 -2.1815 2.7690 44 1 9.9808 -2.8756 4.4069 45 1 13.7094 1.0123 4.3272 46 1 10.5776 0.5052 2.7144 47 1 10.7569 1.2482 4.3247 48 1 8.5088 1.6933 3.2759 49 1 8.3971 0.8286 4.8280 50 1 1.7953 -2.6380 2.2065 51 1 0.3408 -2.0406 1.3724 52 1 1.7051 -2.6871 0.4295 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588123780.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:49 Heat of formation + Delta-G solvation = -67.381186 kcal Electronic energy + Delta-G solvation = -30535.973533 eV Core-core repulsion = 26535.119547 eV Total energy + Delta-G solvation = -4000.853986 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.20955 -40.54894 -39.12370 -38.84978 -36.28080 -34.84310 -33.92522 -33.46636 -31.85030 -31.30781 -29.98207 -27.46801 -27.32086 -26.16301 -24.39829 -23.91990 -23.24835 -23.03931 -21.53760 -20.95045 -19.66930 -18.94401 -18.34338 -18.17338 -17.32197 -17.06414 -16.75954 -16.48094 -16.14027 -15.64744 -15.40144 -15.31664 -15.13729 -15.13019 -14.78732 -14.48973 -14.20947 -14.16531 -14.12989 -13.81485 -13.64974 -13.22123 -13.05287 -13.01700 -12.78241 -12.67782 -12.61432 -12.51165 -12.34252 -12.21180 -12.03047 -11.93613 -11.90823 -11.67994 -11.63444 -11.58448 -11.32987 -11.17306 -10.59004 -10.36808 -10.07694 -9.78617 -8.61098 -7.89445 -5.43423 0.27825 1.22042 1.46595 1.48704 1.59197 2.05136 2.40175 2.50208 3.20905 3.28299 3.64897 3.66973 3.81550 3.82268 3.90297 3.98153 4.06178 4.18806 4.27349 4.34541 4.43180 4.44151 4.48005 4.57578 4.63403 4.70697 4.74626 4.81001 4.87106 4.91065 4.93442 4.95320 4.99798 5.03939 5.08135 5.12751 5.13307 5.18311 5.26530 5.29232 5.31091 5.38283 5.41109 5.49618 5.56519 5.64229 5.66624 5.97108 6.21193 6.42301 6.66572 6.89594 7.15043 7.81350 8.38305 9.17007 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.032539 B = 0.002177 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.296653 B =12859.739358 C =13008.802845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.059 0.941 4 C -0.114 4.114 5 C -0.131 4.131 6 C 0.064 3.936 7 N -0.570 5.570 8 C 0.507 3.493 9 O -0.548 6.548 10 C 0.506 3.494 11 O -0.528 6.528 12 N -0.682 5.682 13 C 0.161 3.839 14 C -0.126 4.126 15 C 0.147 3.853 16 N -0.609 5.609 17 C -0.268 4.268 18 H 0.062 0.938 19 C -0.042 4.042 20 N -0.931 5.931 21 Si 0.967 3.033 22 H -0.266 1.266 23 H -0.292 1.292 24 H -0.288 1.288 25 C 0.185 3.815 26 C -0.132 4.132 27 C 0.131 3.869 28 H 0.083 0.917 29 C -0.159 4.159 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.124 0.876 38 H 0.078 0.922 39 H 0.416 0.584 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.013 0.987 44 H 0.058 0.942 45 H 0.252 0.748 46 H 0.003 0.997 47 H 0.052 0.948 48 H 0.078 0.922 49 H 0.068 0.932 50 H 0.045 0.955 51 H 0.093 0.907 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.513 -2.140 -11.111 28.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.078 0.922 4 C -0.151 4.151 5 C -0.169 4.169 6 C -0.057 4.057 7 N -0.303 5.303 8 C 0.289 3.711 9 O -0.427 6.427 10 C 0.287 3.713 11 O -0.407 6.407 12 N -0.333 5.333 13 C 0.057 3.943 14 C -0.166 4.166 15 C 0.021 3.979 16 N -0.332 5.332 17 C -0.398 4.398 18 H 0.080 0.920 19 C -0.239 4.239 20 N -0.576 5.576 21 Si 0.795 3.205 22 H -0.191 1.191 23 H -0.219 1.219 24 H -0.215 1.215 25 C 0.059 3.941 26 C -0.172 4.172 27 C 0.029 3.971 28 H 0.101 0.899 29 C -0.216 4.216 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.141 0.859 38 H 0.097 0.903 39 H 0.253 0.747 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.031 0.969 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.021 0.979 47 H 0.070 0.930 48 H 0.097 0.903 49 H 0.086 0.914 50 H 0.064 0.936 51 H 0.112 0.888 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -26.295 -2.240 -11.245 28.687 hybrid contribution 1.004 0.496 1.064 1.545 sum -25.291 -1.744 -10.181 27.319 Atomic orbital electron populations 1.21851 0.92576 1.03163 1.02488 1.21453 0.97328 0.98824 0.93931 0.92248 1.21659 0.94449 1.01675 0.97321 1.21924 0.96729 1.00671 0.97625 1.22918 1.02614 0.97475 0.82718 1.48197 1.07119 1.57628 1.17310 1.20089 0.87512 0.80217 0.83238 1.90725 1.75205 1.40084 1.36646 1.20283 0.87749 0.81075 0.82147 1.90494 1.75948 1.37707 1.36501 1.46026 1.08182 1.48565 1.30491 1.20892 0.77639 0.95588 1.00168 1.22209 0.97401 0.96694 1.00261 1.20961 0.90263 0.90496 0.96228 1.44261 1.46360 1.02324 1.40274 1.19431 0.98276 1.21499 1.00615 0.92009 1.26007 0.97481 1.00789 0.99586 1.70154 1.25328 1.33657 1.28468 0.85224 0.78153 0.77369 0.79764 1.19074 1.21863 1.21457 1.20456 0.90815 0.87580 0.95297 1.22302 0.97024 0.97088 1.00738 1.21519 0.77236 0.98491 0.99877 0.89874 1.22191 1.02262 0.94789 1.02367 0.92572 0.91371 0.90839 0.90331 0.90314 0.92741 0.88906 0.85917 0.90338 0.74711 0.90604 0.91861 0.91520 0.96853 0.92382 0.93932 0.97909 0.92982 0.90335 0.91352 0.93625 0.88804 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.71 71.98 0.63 -0.63 16 2 C -0.10 -1.25 2.65 -10.71 -0.03 -1.28 16 3 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 4 C -0.11 -1.23 4.97 30.63 0.15 -1.08 16 5 C -0.13 -1.86 6.09 30.67 0.19 -1.67 16 6 C 0.06 1.20 5.59 86.36 0.48 1.68 16 7 N -0.57 -12.30 2.68 -796.58 -2.14 -14.44 16 8 C 0.51 13.68 7.74 87.27 0.68 14.35 16 9 O -0.55 -16.74 15.92 -3.24 -0.05 -16.79 16 10 C 0.51 14.57 7.71 87.27 0.67 15.24 16 11 O -0.53 -16.52 12.82 -3.24 -0.04 -16.56 16 12 N -0.68 -19.41 5.07 -443.74 -2.25 -21.65 16 13 C 0.16 5.32 2.41 45.02 0.11 5.43 16 14 C -0.13 -4.38 5.65 30.67 0.17 -4.21 16 15 C 0.15 6.20 6.52 86.36 0.56 6.77 16 16 N -0.61 -30.36 2.95 -699.10 -2.06 -32.43 16 17 C -0.27 -14.64 9.51 84.04 0.80 -13.84 16 18 H 0.06 3.32 7.87 -2.91 -0.02 3.30 16 19 C -0.04 -2.33 4.95 84.86 0.42 -1.92 16 20 N -0.93 -54.65 11.58 21.65 0.25 -54.40 16 21 Si 0.97 44.45 29.58 68.60 2.03 46.48 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 23 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 24 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 25 C 0.18 8.66 5.25 86.36 0.45 9.11 16 26 C -0.13 -4.66 5.55 30.67 0.17 -4.49 16 27 C 0.13 2.25 2.80 44.98 0.13 2.37 16 28 H 0.08 1.73 7.00 -2.38 -0.02 1.72 16 29 C -0.16 -2.07 8.52 71.98 0.61 -1.46 16 30 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.07 0.49 6.36 -2.39 -0.02 0.47 16 33 H 0.08 0.68 8.14 -2.38 -0.02 0.67 16 34 H 0.08 0.71 6.51 -2.38 -0.02 0.69 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.12 2.94 4.27 -51.14 -0.22 2.72 16 38 H 0.08 1.32 7.50 -2.39 -0.02 1.31 16 39 H 0.42 10.82 8.09 -92.71 -0.75 10.07 16 40 H 0.08 2.74 7.58 -2.39 -0.02 2.72 16 41 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 43 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.06 2.41 7.93 -2.39 -0.02 2.39 16 45 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 46 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 47 H 0.05 2.73 6.56 -2.39 -0.02 2.71 16 48 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 49 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 50 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.09 0.84 6.38 -2.38 -0.02 0.83 16 52 H 0.07 0.83 5.75 -2.39 -0.01 0.81 16 Total: -1.00 -65.19 392.47 1.89 -63.30 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -0.04 Total: 22.12 kcal Atomic # 6 Polarization: 18.18 SS G_CDS: 6.19 Total: 24.38 kcal Atomic # 7 Polarization: -116.72 SS G_CDS: -6.20 Total: -122.92 kcal Atomic # 8 Polarization: -33.26 SS G_CDS: -0.09 Total: -33.35 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -65.19 1.89 -63.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588123780.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.084 kcal (2) G-P(sol) polarization free energy of solvation -65.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds