Wall clock time and date at job start Tue Mar 31 2020 22:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.50095 * 2 1 4 4 C 1.53042 * 109.50052 * 239.89760 * 2 1 3 5 5 C 1.53072 * 109.65885 * 178.74963 * 4 2 1 6 6 C 1.53189 * 109.29610 * 61.15419 * 5 4 2 7 7 N 1.46921 * 108.89395 * 305.57795 * 6 5 4 8 8 C 1.34775 * 120.62925 * 233.56155 * 7 6 5 9 9 O 1.21355 * 120.00079 * 172.74462 * 8 7 6 10 10 C 1.49447 * 120.00103 * 352.73434 * 8 7 6 11 11 O 1.21340 * 120.00051 * 353.45474 * 10 8 7 12 12 N 1.34783 * 119.99956 * 173.44629 * 10 8 7 13 13 C 1.46495 * 119.99905 * 180.02562 * 12 10 8 14 14 C 1.53041 * 109.46210 * 275.03054 * 13 12 10 15 15 C 1.53190 * 109.31419 * 178.60191 * 14 13 12 16 16 N 1.46920 * 108.76714 * 54.65608 * 15 14 13 17 17 C 1.36938 * 120.63275 * 126.36227 * 16 15 14 18 18 H 1.07993 * 119.99602 * 324.84640 * 17 16 15 19 19 C 1.38815 * 119.99862 * 144.85280 * 17 16 15 20 20 N 1.31617 * 120.00272 * 346.79104 * 19 17 16 21 21 Si 1.86799 * 119.99720 * 166.78953 * 19 17 16 22 22 H 1.48501 * 109.47054 * 89.99786 * 21 19 17 23 23 H 1.48500 * 109.47059 * 209.99340 * 21 19 17 24 24 H 1.48494 * 109.47219 * 329.99776 * 21 19 17 25 25 C 1.46932 * 118.73877 * 306.38522 * 16 15 14 26 26 C 1.53039 * 109.45992 * 154.97269 * 13 12 10 27 27 C 1.46927 * 118.73948 * 53.53498 * 7 6 5 28 28 H 1.09000 * 109.58772 * 66.32607 * 27 7 6 29 29 C 1.53005 * 109.58728 * 186.60512 * 27 7 6 30 30 H 1.09001 * 109.47334 * 299.93997 * 1 2 3 31 31 H 1.09004 * 109.46933 * 59.93919 * 1 2 3 32 32 H 1.08996 * 109.47119 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.46004 * 298.71039 * 4 2 1 34 34 H 1.09008 * 109.45369 * 58.67874 * 4 2 1 35 35 H 1.09005 * 109.39228 * 301.27822 * 5 4 2 36 36 H 1.09004 * 109.61992 * 181.17651 * 5 4 2 37 37 H 1.09003 * 109.58450 * 185.71594 * 6 5 4 38 38 H 1.09002 * 109.58793 * 65.43741 * 6 5 4 39 39 H 0.96999 * 120.00166 * 0.02562 * 12 10 8 40 40 H 1.09003 * 109.46316 * 34.99969 * 13 12 10 41 41 H 1.09005 * 109.49823 * 298.56728 * 14 13 12 42 42 H 1.08999 * 109.49491 * 58.65980 * 14 13 12 43 43 H 1.09004 * 109.59868 * 294.86669 * 15 14 13 44 44 H 1.09005 * 109.70298 * 174.50458 * 15 14 13 45 45 H 0.96991 * 120.00226 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.58233 * 293.81868 * 25 16 15 47 47 H 1.08996 * 109.58989 * 173.39411 * 25 16 15 48 48 H 1.08992 * 109.50146 * 301.33703 * 26 13 12 49 49 H 1.09003 * 109.49654 * 61.40628 * 26 13 12 50 50 H 1.08999 * 109.46960 * 52.31557 * 29 27 7 51 51 H 1.09002 * 109.46671 * 172.31647 * 29 27 7 52 52 H 1.09002 * 109.46932 * 292.31140 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7235 -1.2481 5 6 3.5712 -0.6985 -1.2676 6 6 4.1052 -1.4267 -0.0302 7 7 3.5045 -0.8288 1.1699 8 6 4.2811 -0.3848 2.1781 9 8 3.7851 0.2246 3.1029 10 6 5.7529 -0.6433 2.1572 11 8 6.2322 -1.3525 1.2972 12 7 6.5479 -0.0884 3.0935 13 6 7.9907 -0.3413 3.0727 14 6 8.2893 -1.6516 3.8048 15 6 9.7947 -1.9305 3.7508 16 7 10.5109 -0.7643 4.2851 17 6 11.4221 -0.9086 5.2972 18 1 11.2582 -1.6446 6.0703 19 6 12.5561 -0.1087 5.3293 20 7 12.8934 0.5977 4.2712 21 14 13.6035 -0.0349 6.8743 22 1 14.6500 -1.0868 6.8135 23 1 14.2480 1.2994 6.9721 24 1 12.7453 -0.2587 8.0652 25 6 10.2306 0.5598 3.7134 26 6 8.7203 0.8107 3.7674 27 6 2.0412 -0.7234 1.2499 28 1 1.6053 -1.7211 1.3012 29 6 1.6516 0.0714 2.4979 30 1 -0.3634 0.5129 0.8905 31 1 -0.3633 0.5148 -0.8895 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6967 -1.7576 -1.2347 34 1 1.6583 -0.2250 -2.1388 35 1 3.9164 0.3354 -1.2585 36 1 3.9339 -1.1957 -2.1673 37 1 5.1896 -1.3246 0.0143 38 1 3.8396 -2.4825 -0.0844 39 1 6.1647 0.4783 3.7812 40 1 8.3314 -0.4167 2.0400 41 1 7.9717 -1.5682 4.8442 42 1 7.7507 -2.4681 3.3237 43 1 10.0976 -2.1038 2.7181 44 1 10.0274 -2.8094 4.3522 45 1 13.6860 1.1563 4.2935 46 1 10.5691 0.5897 2.6777 47 1 10.7490 1.3247 4.2915 48 1 8.4886 1.7469 3.2598 49 1 8.3982 0.8710 4.8070 50 1 2.1924 1.0177 2.5095 51 1 0.5792 0.2658 2.4846 52 1 1.9057 -0.5033 3.3886 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588123781.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:00 Heat of formation + Delta-G solvation = -34.447585 kcal Electronic energy + Delta-G solvation = -30626.204399 eV Core-core repulsion = 26626.778522 eV Total energy + Delta-G solvation = -3999.425877 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.27434 -39.42824 -37.89655 -37.43424 -34.83675 -33.92117 -33.03935 -32.14414 -30.20846 -29.61923 -29.05710 -26.59729 -25.80861 -24.76935 -23.35133 -22.31222 -21.92250 -21.57679 -20.57558 -19.98591 -19.14320 -17.55772 -16.83464 -16.63060 -16.12171 -15.76552 -15.66839 -15.13419 -14.87989 -14.76623 -14.36269 -14.08041 -13.74247 -13.67520 -13.58326 -13.35155 -13.07846 -13.01964 -12.75978 -12.60672 -12.50301 -12.44784 -12.17223 -11.91195 -11.50783 -11.40964 -11.25805 -11.13764 -11.12086 -10.86314 -10.74737 -10.70393 -10.51884 -10.36227 -10.28711 -10.09369 -9.88478 -9.61396 -8.98250 -8.82907 -8.76285 -8.50351 -6.60866 -5.82778 -3.32575 1.41925 2.28383 3.19341 3.35484 3.42647 3.44861 3.46629 4.27826 4.36981 4.44416 4.46866 4.52671 4.74050 4.93960 4.98882 5.12690 5.18255 5.26793 5.28235 5.35288 5.39997 5.40556 5.44898 5.51090 5.52093 5.63096 5.67510 5.77214 5.78394 5.81696 5.83316 5.91214 6.02661 6.07289 6.08761 6.22772 6.27985 6.43402 6.45922 6.48142 6.53945 6.74479 6.80286 6.95239 6.99560 7.24648 7.32755 7.54103 7.76729 7.79295 8.07110 8.46719 9.18903 9.79499 10.40667 11.26060 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.031088 B = 0.002227 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.467358 B =12572.018871 C =12910.107711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 H 0.075 0.925 4 C -0.117 4.117 5 C -0.135 4.135 6 C 0.063 3.937 7 N -0.579 5.579 8 C 0.508 3.492 9 O -0.517 6.517 10 C 0.502 3.498 11 O -0.517 6.517 12 N -0.687 5.687 13 C 0.148 3.852 14 C -0.140 4.140 15 C 0.148 3.852 16 N -0.591 5.591 17 C -0.258 4.258 18 H 0.062 0.938 19 C 0.009 3.991 20 N -0.900 5.900 21 Si 0.902 3.098 22 H -0.286 1.286 23 H -0.289 1.289 24 H -0.278 1.278 25 C 0.179 3.821 26 C -0.148 4.148 27 C 0.144 3.856 28 H 0.074 0.926 29 C -0.144 4.144 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.147 0.853 38 H 0.066 0.934 39 H 0.408 0.592 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.021 0.979 44 H 0.058 0.942 45 H 0.255 0.745 46 H 0.024 0.976 47 H 0.083 0.917 48 H 0.056 0.944 49 H 0.062 0.938 50 H 0.080 0.920 51 H 0.048 0.952 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.821 -0.951 -9.964 25.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 H 0.093 0.907 4 C -0.155 4.155 5 C -0.174 4.174 6 C -0.058 4.058 7 N -0.313 5.313 8 C 0.291 3.709 9 O -0.394 6.394 10 C 0.283 3.717 11 O -0.395 6.395 12 N -0.337 5.337 13 C 0.045 3.955 14 C -0.180 4.180 15 C 0.021 3.979 16 N -0.314 5.314 17 C -0.388 4.388 18 H 0.080 0.920 19 C -0.191 4.191 20 N -0.543 5.543 21 Si 0.732 3.268 22 H -0.213 1.213 23 H -0.215 1.215 24 H -0.204 1.204 25 C 0.052 3.948 26 C -0.188 4.188 27 C 0.042 3.958 28 H 0.091 0.909 29 C -0.201 4.201 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.164 0.836 38 H 0.085 0.915 39 H 0.244 0.756 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.039 0.961 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.042 0.958 47 H 0.101 0.899 48 H 0.075 0.925 49 H 0.081 0.919 50 H 0.098 0.902 51 H 0.067 0.933 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -23.558 -1.019 -10.079 25.643 hybrid contribution 0.270 0.261 0.929 1.002 sum -23.287 -0.758 -9.151 25.032 Atomic orbital electron populations 1.21840 0.94286 1.02073 1.02188 1.21560 0.96053 1.00177 0.94443 0.90650 1.21635 0.95706 1.00728 0.97399 1.21953 0.95601 1.01535 0.98264 1.22983 1.04064 0.96452 0.82270 1.47995 1.06285 1.59003 1.17991 1.20278 0.87803 0.79885 0.82922 1.90803 1.73859 1.39064 1.35628 1.20224 0.87522 0.81322 0.82650 1.90441 1.75496 1.37874 1.35736 1.46260 1.08992 1.48748 1.29725 1.21243 0.76343 0.96628 1.01237 1.22405 0.99902 0.95811 0.99905 1.20885 0.88615 0.91437 0.96922 1.44004 1.45900 1.00580 1.40898 1.19094 0.98422 1.20567 1.00741 0.92006 1.25252 0.96285 1.00596 0.96918 1.69992 1.25977 1.31229 1.27142 0.86310 0.80351 0.77095 0.83058 1.21258 1.21543 1.20376 1.20660 0.87721 0.88922 0.97460 1.22572 1.00744 0.95601 0.99876 1.21462 0.78583 0.99534 0.96241 0.90852 1.22337 0.99660 1.02143 0.95923 0.92007 0.92323 0.92516 0.91781 0.91672 0.91662 0.90409 0.83600 0.91524 0.75613 0.89495 0.92095 0.92634 0.96103 0.92397 0.93525 0.95800 0.89883 0.92533 0.91881 0.90152 0.93311 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 8.97 37.15 0.33 -0.54 16 2 C -0.10 -0.79 2.34 -90.50 -0.21 -1.00 16 3 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.12 -0.82 5.16 -26.67 -0.14 -0.96 16 5 C -0.14 -1.10 6.09 -26.60 -0.16 -1.26 16 6 C 0.06 0.65 6.02 -3.71 -0.02 0.62 16 7 N -0.58 -6.49 2.97 -165.72 -0.49 -6.99 16 8 C 0.51 6.76 7.66 -11.59 -0.09 6.67 16 9 O -0.52 -7.37 11.91 5.49 0.07 -7.30 16 10 C 0.50 7.29 7.72 -11.58 -0.09 7.20 16 11 O -0.52 -8.22 12.80 5.51 0.07 -8.15 16 12 N -0.69 -9.96 5.07 -54.20 -0.27 -10.23 16 13 C 0.15 2.49 2.42 -67.89 -0.16 2.33 16 14 C -0.14 -2.49 5.65 -26.61 -0.15 -2.64 16 15 C 0.15 3.12 6.52 -3.71 -0.02 3.10 16 16 N -0.59 -14.52 2.95 -172.32 -0.51 -15.03 16 17 C -0.26 -6.98 9.52 -15.06 -0.14 -7.13 16 18 H 0.06 1.65 7.86 -52.49 -0.41 1.24 16 19 C 0.01 0.25 4.96 -17.43 -0.09 0.16 16 20 N -0.90 -25.73 11.51 55.49 0.64 -25.09 16 21 Si 0.90 21.37 29.57 -169.99 -5.03 16.34 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.18 4.09 5.25 -3.71 -0.02 4.07 16 26 C -0.15 -2.64 5.55 -26.61 -0.15 -2.79 16 27 C 0.14 1.35 2.95 -67.60 -0.20 1.15 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 C -0.14 -1.45 7.52 37.16 0.28 -1.17 16 30 H 0.06 0.37 6.46 -51.93 -0.34 0.03 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.15 1.80 4.22 -55.27 -0.23 1.57 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.41 5.43 8.09 -40.82 -0.33 5.10 16 40 H 0.09 1.58 7.58 -51.93 -0.39 1.19 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 45 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.08 2.11 6.50 -51.93 -0.34 1.77 16 48 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 49 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 50 H 0.08 0.95 6.40 -51.93 -0.33 0.62 16 51 H 0.05 0.40 6.31 -51.93 -0.33 0.07 16 52 H 0.07 0.78 7.08 -51.93 -0.37 0.41 16 LS Contribution 391.27 15.07 5.90 5.90 Total: -1.00 -29.30 391.27 -9.63 -38.93 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -8.96 Total: 3.82 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -1.03 Total: 7.81 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -0.64 Total: -57.34 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: 0.14 Total: -15.46 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.30 -9.63 -38.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588123781.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.484 kcal (2) G-P(sol) polarization free energy of solvation -29.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds