Wall clock time and date at job start Tue Mar 31 2020 22:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.50095 * 2 1 4 4 C 1.53042 * 109.50052 * 239.89760 * 2 1 3 5 5 C 1.53072 * 109.65885 * 178.74963 * 4 2 1 6 6 C 1.53189 * 109.29610 * 61.15419 * 5 4 2 7 7 N 1.46921 * 108.89395 * 305.57795 * 6 5 4 8 8 C 1.34775 * 120.62925 * 233.56155 * 7 6 5 9 9 O 1.21355 * 120.00079 * 172.74462 * 8 7 6 10 10 C 1.49447 * 120.00103 * 352.73434 * 8 7 6 11 11 O 1.21340 * 120.00051 * 353.45474 * 10 8 7 12 12 N 1.34783 * 119.99956 * 173.44629 * 10 8 7 13 13 C 1.46495 * 119.99905 * 180.02562 * 12 10 8 14 14 C 1.53041 * 109.46210 * 275.03054 * 13 12 10 15 15 C 1.53190 * 109.31419 * 178.60191 * 14 13 12 16 16 N 1.46920 * 108.76714 * 54.65608 * 15 14 13 17 17 C 1.36938 * 120.63275 * 126.36227 * 16 15 14 18 18 H 1.07993 * 119.99602 * 324.84640 * 17 16 15 19 19 C 1.38815 * 119.99862 * 144.85280 * 17 16 15 20 20 N 1.31617 * 120.00272 * 346.79104 * 19 17 16 21 21 Si 1.86799 * 119.99720 * 166.78953 * 19 17 16 22 22 H 1.48501 * 109.47054 * 89.99786 * 21 19 17 23 23 H 1.48500 * 109.47059 * 209.99340 * 21 19 17 24 24 H 1.48494 * 109.47219 * 329.99776 * 21 19 17 25 25 C 1.46932 * 118.73877 * 306.38522 * 16 15 14 26 26 C 1.53039 * 109.45992 * 154.97269 * 13 12 10 27 27 C 1.46927 * 118.73948 * 53.53498 * 7 6 5 28 28 H 1.09000 * 109.58772 * 66.32607 * 27 7 6 29 29 C 1.53005 * 109.58728 * 186.60512 * 27 7 6 30 30 H 1.09001 * 109.47334 * 299.93997 * 1 2 3 31 31 H 1.09004 * 109.46933 * 59.93919 * 1 2 3 32 32 H 1.08996 * 109.47119 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.46004 * 298.71039 * 4 2 1 34 34 H 1.09008 * 109.45369 * 58.67874 * 4 2 1 35 35 H 1.09005 * 109.39228 * 301.27822 * 5 4 2 36 36 H 1.09004 * 109.61992 * 181.17651 * 5 4 2 37 37 H 1.09003 * 109.58450 * 185.71594 * 6 5 4 38 38 H 1.09002 * 109.58793 * 65.43741 * 6 5 4 39 39 H 0.96999 * 120.00166 * 0.02562 * 12 10 8 40 40 H 1.09003 * 109.46316 * 34.99969 * 13 12 10 41 41 H 1.09005 * 109.49823 * 298.56728 * 14 13 12 42 42 H 1.08999 * 109.49491 * 58.65980 * 14 13 12 43 43 H 1.09004 * 109.59868 * 294.86669 * 15 14 13 44 44 H 1.09005 * 109.70298 * 174.50458 * 15 14 13 45 45 H 0.96991 * 120.00226 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.58233 * 293.81868 * 25 16 15 47 47 H 1.08996 * 109.58989 * 173.39411 * 25 16 15 48 48 H 1.08992 * 109.50146 * 301.33703 * 26 13 12 49 49 H 1.09003 * 109.49654 * 61.40628 * 26 13 12 50 50 H 1.08999 * 109.46960 * 52.31557 * 29 27 7 51 51 H 1.09002 * 109.46671 * 172.31647 * 29 27 7 52 52 H 1.09002 * 109.46932 * 292.31140 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7235 -1.2481 5 6 3.5712 -0.6985 -1.2676 6 6 4.1052 -1.4267 -0.0302 7 7 3.5045 -0.8288 1.1699 8 6 4.2811 -0.3848 2.1781 9 8 3.7851 0.2246 3.1029 10 6 5.7529 -0.6433 2.1572 11 8 6.2322 -1.3525 1.2972 12 7 6.5479 -0.0884 3.0935 13 6 7.9907 -0.3413 3.0727 14 6 8.2893 -1.6516 3.8048 15 6 9.7947 -1.9305 3.7508 16 7 10.5109 -0.7643 4.2851 17 6 11.4221 -0.9086 5.2972 18 1 11.2582 -1.6446 6.0703 19 6 12.5561 -0.1087 5.3293 20 7 12.8934 0.5977 4.2712 21 14 13.6035 -0.0349 6.8743 22 1 14.6500 -1.0868 6.8135 23 1 14.2480 1.2994 6.9721 24 1 12.7453 -0.2587 8.0652 25 6 10.2306 0.5598 3.7134 26 6 8.7203 0.8107 3.7674 27 6 2.0412 -0.7234 1.2499 28 1 1.6053 -1.7211 1.3012 29 6 1.6516 0.0714 2.4979 30 1 -0.3634 0.5129 0.8905 31 1 -0.3633 0.5148 -0.8895 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6967 -1.7576 -1.2347 34 1 1.6583 -0.2250 -2.1388 35 1 3.9164 0.3354 -1.2585 36 1 3.9339 -1.1957 -2.1673 37 1 5.1896 -1.3246 0.0143 38 1 3.8396 -2.4825 -0.0844 39 1 6.1647 0.4783 3.7812 40 1 8.3314 -0.4167 2.0400 41 1 7.9717 -1.5682 4.8442 42 1 7.7507 -2.4681 3.3237 43 1 10.0976 -2.1038 2.7181 44 1 10.0274 -2.8094 4.3522 45 1 13.6860 1.1563 4.2935 46 1 10.5691 0.5897 2.6777 47 1 10.7490 1.3247 4.2915 48 1 8.4886 1.7469 3.2598 49 1 8.3982 0.8710 4.8070 50 1 2.1924 1.0177 2.5095 51 1 0.5792 0.2658 2.4846 52 1 1.9057 -0.5033 3.3886 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588123781.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:57 Heat of formation + Delta-G solvation = -51.730990 kcal Electronic energy + Delta-G solvation = -30626.953864 eV Core-core repulsion = 26626.778522 eV Total energy + Delta-G solvation = -4000.175342 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.28156 -40.55639 -38.99155 -38.77468 -36.25668 -34.85522 -33.99140 -33.70499 -31.84841 -31.30596 -29.86372 -27.38920 -27.18186 -26.06449 -24.55208 -23.92523 -23.06666 -22.58772 -21.54904 -21.16619 -20.48345 -18.91212 -18.32679 -17.83182 -17.12903 -16.97718 -16.70149 -16.58113 -16.04515 -15.62439 -15.52735 -15.40653 -15.36680 -14.95898 -14.71177 -14.44048 -14.24244 -14.14055 -14.12977 -13.81202 -13.40645 -13.28171 -13.21465 -13.02001 -12.80739 -12.70717 -12.61135 -12.51617 -12.27300 -12.05929 -12.05287 -11.93251 -11.91106 -11.75176 -11.63846 -11.35352 -11.33620 -11.15697 -10.57817 -10.22848 -9.85603 -9.69412 -8.61036 -7.89178 -5.42529 0.32225 1.25264 1.47628 1.48770 1.58511 2.09458 2.41680 2.50590 3.23890 3.29522 3.66148 3.72267 3.73788 3.83084 3.89121 3.98795 4.06233 4.23882 4.26295 4.28054 4.43448 4.43584 4.60748 4.61842 4.63922 4.71676 4.77349 4.81188 4.82432 4.90239 4.94667 4.98176 5.03680 5.07774 5.10087 5.13029 5.17151 5.19493 5.26474 5.29391 5.38197 5.41956 5.44968 5.48292 5.62704 5.65033 5.66550 6.01198 6.23472 6.42255 6.72524 6.94269 7.15314 7.81890 8.38388 9.17429 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.031088 B = 0.002227 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.467358 B =12572.018871 C =12910.107711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.062 0.938 4 C -0.113 4.113 5 C -0.131 4.131 6 C 0.062 3.938 7 N -0.574 5.574 8 C 0.507 3.493 9 O -0.531 6.531 10 C 0.502 3.498 11 O -0.531 6.531 12 N -0.681 5.681 13 C 0.161 3.839 14 C -0.125 4.125 15 C 0.146 3.854 16 N -0.609 5.609 17 C -0.269 4.269 18 H 0.062 0.938 19 C -0.043 4.043 20 N -0.932 5.932 21 Si 0.968 3.032 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.270 1.270 25 C 0.184 3.816 26 C -0.132 4.132 27 C 0.140 3.860 28 H 0.086 0.914 29 C -0.137 4.137 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.126 0.874 38 H 0.077 0.923 39 H 0.416 0.584 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.013 0.987 44 H 0.057 0.943 45 H 0.252 0.748 46 H 0.002 0.998 47 H 0.053 0.947 48 H 0.078 0.922 49 H 0.068 0.932 50 H 0.060 0.940 51 H 0.070 0.930 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.326 -1.415 -10.334 28.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 H 0.081 0.919 4 C -0.151 4.151 5 C -0.169 4.169 6 C -0.059 4.059 7 N -0.307 5.307 8 C 0.290 3.710 9 O -0.409 6.409 10 C 0.283 3.717 11 O -0.410 6.410 12 N -0.332 5.332 13 C 0.057 3.943 14 C -0.165 4.165 15 C 0.020 3.980 16 N -0.332 5.332 17 C -0.399 4.399 18 H 0.080 0.920 19 C -0.239 4.239 20 N -0.577 5.577 21 Si 0.795 3.205 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.194 1.194 25 C 0.058 3.942 26 C -0.171 4.171 27 C 0.038 3.962 28 H 0.104 0.896 29 C -0.194 4.194 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.110 0.890 37 H 0.143 0.857 38 H 0.095 0.905 39 H 0.253 0.747 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.031 0.969 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.020 0.980 47 H 0.072 0.928 48 H 0.096 0.904 49 H 0.086 0.914 50 H 0.079 0.921 51 H 0.089 0.911 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -26.113 -1.499 -10.466 28.172 hybrid contribution 1.010 0.348 0.964 1.439 sum -25.103 -1.152 -9.501 26.866 Atomic orbital electron populations 1.21817 0.92672 1.02819 1.02692 1.21525 0.97288 0.99204 0.93776 0.91929 1.21630 0.94534 1.01394 0.97520 1.21929 0.96644 1.00722 0.97644 1.22965 1.02915 0.97312 0.82733 1.48131 1.07111 1.57904 1.17527 1.20033 0.87170 0.80375 0.83466 1.90816 1.73768 1.39963 1.36311 1.20528 0.88226 0.80821 0.82091 1.90469 1.76066 1.38364 1.36124 1.46010 1.07859 1.49152 1.30227 1.20873 0.77701 0.95610 1.00104 1.22203 0.97310 0.96723 1.00300 1.20963 0.90411 0.90435 0.96165 1.44260 1.46093 1.02040 1.40847 1.19401 0.98872 1.20292 1.01326 0.91991 1.25994 0.97593 1.00663 0.99645 1.70139 1.26427 1.32124 1.28973 0.85291 0.78641 0.76688 0.79869 1.21104 1.21760 1.19429 1.20465 0.90727 0.87653 0.95341 1.22297 0.97057 0.97060 1.00703 1.21683 0.77260 1.00374 0.96878 0.89575 1.22209 1.00757 1.00850 0.95558 0.92015 0.91378 0.91621 0.90799 0.90306 0.92689 0.88978 0.85661 0.90514 0.74674 0.90727 0.91861 0.91572 0.96893 0.92398 0.93929 0.97987 0.92848 0.90360 0.91373 0.92129 0.91137 0.93268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.97 71.98 0.65 -0.63 16 2 C -0.10 -1.28 2.34 -10.72 -0.03 -1.30 16 3 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 4 C -0.11 -1.26 5.16 30.63 0.16 -1.10 16 5 C -0.13 -1.88 6.09 30.68 0.19 -1.69 16 6 C 0.06 1.17 6.02 86.36 0.52 1.69 16 7 N -0.57 -12.15 2.97 -796.59 -2.37 -14.51 16 8 C 0.51 13.10 7.66 87.27 0.67 13.76 16 9 O -0.53 -14.81 11.91 -3.26 -0.04 -14.85 16 10 C 0.50 14.20 7.72 87.27 0.67 14.87 16 11 O -0.53 -16.61 12.80 -3.21 -0.04 -16.65 16 12 N -0.68 -19.07 5.07 -443.75 -2.25 -21.32 16 13 C 0.16 5.31 2.42 45.02 0.11 5.42 16 14 C -0.13 -4.36 5.65 30.67 0.17 -4.19 16 15 C 0.15 6.20 6.52 86.36 0.56 6.76 16 16 N -0.61 -30.39 2.95 -699.09 -2.07 -32.45 16 17 C -0.27 -14.68 9.52 84.03 0.80 -13.88 16 18 H 0.06 3.32 7.86 -2.91 -0.02 3.30 16 19 C -0.04 -2.36 4.96 84.86 0.42 -1.94 16 20 N -0.93 -54.64 11.51 21.65 0.25 -54.39 16 21 Si 0.97 44.40 29.57 68.60 2.03 46.43 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 23 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 25 C 0.18 8.64 5.25 86.36 0.45 9.09 16 26 C -0.13 -4.64 5.55 30.67 0.17 -4.47 16 27 C 0.14 2.35 2.95 44.98 0.13 2.48 16 28 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 29 C -0.14 -2.58 7.52 71.98 0.54 -2.04 16 30 H 0.06 0.56 6.46 -2.39 -0.02 0.55 16 31 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.13 3.01 4.22 -55.39 -0.23 2.78 16 38 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.42 10.53 8.09 -92.71 -0.75 9.78 16 40 H 0.07 2.70 7.58 -2.39 -0.02 2.68 16 41 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 42 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.06 2.41 7.93 -2.38 -0.02 2.39 16 45 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 46 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 47 H 0.05 2.80 6.50 -2.39 -0.02 2.79 16 48 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 49 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 50 H 0.06 1.40 6.40 -2.39 -0.02 1.38 16 51 H 0.07 1.00 6.31 -2.39 -0.02 0.99 16 52 H 0.05 1.10 7.08 -2.39 -0.02 1.08 16 Total: -1.00 -63.83 391.27 1.64 -62.19 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: -0.06 Total: 22.74 kcal Atomic # 6 Polarization: 16.64 SS G_CDS: 6.19 Total: 22.83 kcal Atomic # 7 Polarization: -116.25 SS G_CDS: -6.43 Total: -122.68 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -0.08 Total: -31.49 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -63.83 1.64 -62.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588123781.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.455 kcal (2) G-P(sol) polarization free energy of solvation -63.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds