Wall clock time and date at job start Tue Mar 31 2020 22:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.69929 * 2 1 4 4 C 1.53186 * 109.59187 * 239.64815 * 2 1 3 5 5 H 1.09005 * 109.49689 * 305.52410 * 4 2 1 6 6 C 1.53003 * 109.49807 * 65.62224 * 4 2 1 7 7 C 1.53040 * 109.31640 * 185.57597 * 4 2 1 8 8 C 1.53352 * 109.60792 * 61.37242 * 7 4 2 9 9 C 1.53197 * 109.14754 * 298.71509 * 8 7 4 10 10 N 1.46924 * 109.58848 * 120.35215 * 2 1 3 11 11 C 1.34780 * 120.62816 * 353.38344 * 10 2 1 12 12 O 1.21344 * 119.99963 * 354.80477 * 11 10 2 13 13 C 1.49455 * 120.00052 * 174.80955 * 11 10 2 14 14 O 1.21354 * 119.99685 * 5.67435 * 13 11 10 15 15 N 1.34776 * 120.00224 * 185.68073 * 13 11 10 16 16 C 1.46495 * 120.00258 * 179.97438 * 15 13 11 17 17 C 1.53041 * 109.46260 * 275.02836 * 16 15 13 18 18 C 1.53187 * 109.31496 * 178.59834 * 17 16 15 19 19 N 1.46926 * 108.76515 * 54.65410 * 18 17 16 20 20 C 1.36938 * 120.63054 * 126.40316 * 19 18 17 21 21 H 1.08000 * 120.00089 * 329.69646 * 20 19 18 22 22 C 1.38806 * 119.99886 * 149.69624 * 20 19 18 23 23 N 1.31624 * 120.00221 * 349.98374 * 22 20 19 24 24 Si 1.86803 * 120.00064 * 169.98537 * 22 20 19 25 25 H 1.48499 * 109.46832 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47360 * 120.00107 * 24 22 20 27 27 H 1.48498 * 109.47012 * 240.00172 * 24 22 20 28 28 C 1.46924 * 118.73702 * 306.38604 * 19 18 17 29 29 C 1.53038 * 109.46228 * 154.97283 * 16 15 13 30 30 H 1.09000 * 109.47683 * 306.37376 * 1 2 3 31 31 H 1.09000 * 109.46895 * 66.38267 * 1 2 3 32 32 H 1.09008 * 109.46628 * 186.37482 * 1 2 3 33 33 H 1.08993 * 109.47084 * 60.00587 * 6 4 2 34 34 H 1.09002 * 109.46590 * 180.02562 * 6 4 2 35 35 H 1.08998 * 109.46937 * 299.99921 * 6 4 2 36 36 H 1.08998 * 109.46099 * 181.38037 * 7 4 2 37 37 H 1.08997 * 109.46129 * 301.35568 * 7 4 2 38 38 H 1.08997 * 109.68977 * 178.74733 * 8 7 4 39 39 H 1.08999 * 109.47372 * 58.54629 * 8 7 4 40 40 H 1.08999 * 109.58594 * 294.71611 * 9 8 7 41 41 H 1.08997 * 109.58615 * 174.43859 * 9 8 7 42 42 H 0.96999 * 119.99784 * 359.97438 * 15 13 11 43 43 H 1.09006 * 109.45868 * 34.99746 * 16 15 13 44 44 H 1.09001 * 109.49570 * 298.56656 * 17 16 15 45 45 H 1.09003 * 109.49304 * 58.65984 * 17 16 15 46 46 H 1.09005 * 109.59758 * 294.87105 * 18 17 16 47 47 H 1.09000 * 109.70190 * 174.50516 * 18 17 16 48 48 H 0.96998 * 119.99757 * 179.97438 * 23 22 20 49 49 H 1.09004 * 109.58950 * 293.81366 * 28 19 18 50 50 H 1.09002 * 109.70188 * 173.46326 * 28 19 18 51 51 H 1.09006 * 109.49664 * 301.33845 * 29 16 15 52 52 H 1.08991 * 109.49714 * 61.43449 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7292 -1.2454 5 1 1.6031 -1.7253 -1.2913 6 6 1.6540 0.0604 -2.4966 7 6 3.5676 -0.8478 -1.1701 8 6 3.9596 -1.6672 0.0655 9 6 3.4650 -0.9468 1.3238 10 7 2.0226 -0.6995 1.1945 11 6 1.1674 -1.1062 2.1536 12 8 -0.0081 -0.8139 2.0820 13 6 1.6670 -1.9172 3.3052 14 8 2.8563 -2.1224 3.4321 15 7 0.7967 -2.4207 4.2027 16 6 1.2863 -3.2161 5.3313 17 6 1.4530 -4.6732 4.8939 18 6 1.9982 -5.4949 6.0662 19 7 1.1136 -5.3103 7.2247 20 6 0.5795 -6.3913 7.8739 21 1 0.3734 -7.3007 7.3292 22 6 0.3029 -6.3180 9.2322 23 7 0.7308 -5.2917 9.9365 24 14 -0.6764 -7.6760 10.0605 25 1 -1.0371 -8.7091 9.0566 26 1 0.1436 -8.2940 11.1333 27 1 -1.9138 -7.1048 10.6503 28 6 0.8132 -3.9439 7.6735 29 6 0.2815 -3.1396 6.4831 30 1 -0.3634 0.6094 0.8274 31 1 -0.3633 0.4117 -0.9416 32 1 -0.3633 -1.0214 0.1141 33 1 2.0962 1.0556 -2.4505 34 1 2.0194 -0.4592 -3.3825 35 1 0.5687 0.1469 -2.5483 36 1 3.9379 -1.3446 -2.0668 37 1 4.0062 0.1475 -1.0990 38 1 5.0437 -1.7713 0.1082 39 1 3.5009 -2.6542 0.0074 40 1 3.9903 0.0022 1.4318 41 1 3.6521 -1.5695 2.1986 42 1 -0.1539 -2.2564 4.1014 43 1 2.2482 -2.8239 5.6618 44 1 0.4869 -5.0737 4.5869 45 1 2.1509 -4.7246 4.0582 46 1 3.0030 -5.1538 6.3158 47 1 2.0277 -6.5498 5.7933 48 1 0.5372 -5.2404 10.8856 49 1 1.7213 -3.4764 8.0542 50 1 0.0597 -3.9730 8.4606 51 1 0.1455 -2.0992 6.7786 52 1 -0.6734 -3.5546 6.1609 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588123782.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:09 Heat of formation + Delta-G solvation = -30.054686 kcal Electronic energy + Delta-G solvation = -30707.685802 eV Core-core repulsion = 26708.450415 eV Total energy + Delta-G solvation = -3999.235387 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.28141 -39.42732 -37.89717 -37.46600 -34.87355 -33.89297 -32.99935 -32.16470 -30.22663 -29.57551 -29.03995 -26.56978 -25.83390 -24.78586 -23.34846 -22.30671 -21.90423 -21.57142 -20.59711 -19.97184 -19.15109 -17.57627 -16.87598 -16.64132 -16.07240 -15.80767 -15.63043 -15.09649 -14.88116 -14.82162 -14.46899 -13.96023 -13.80351 -13.67831 -13.56476 -13.29168 -13.04795 -13.00297 -12.78025 -12.60497 -12.54858 -12.43944 -12.17310 -11.87027 -11.54178 -11.40708 -11.23695 -11.13151 -11.05864 -10.87975 -10.78319 -10.70337 -10.51401 -10.32152 -10.17912 -10.05834 -9.85525 -9.64614 -8.95114 -8.83595 -8.75082 -8.50914 -6.68162 -5.81221 -3.28733 1.41172 2.28397 3.20304 3.35216 3.43113 3.45009 3.46979 4.27386 4.38626 4.44576 4.46451 4.54841 4.78143 4.95391 5.01440 5.14616 5.19566 5.26979 5.29569 5.37580 5.41407 5.42785 5.44177 5.50273 5.52403 5.66031 5.68701 5.76993 5.79066 5.81572 5.86356 5.91670 6.02471 6.08756 6.11312 6.22816 6.31620 6.43874 6.45166 6.48418 6.56514 6.73462 6.81694 6.93066 7.01380 7.31022 7.32653 7.65271 7.76011 7.78462 8.07344 8.44288 9.19180 9.80347 10.37438 11.26955 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.028276 B = 0.002280 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.996002 B =12275.339143 C =12596.373430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.144 3.856 3 H 0.074 0.926 4 C -0.103 4.103 5 H 0.074 0.926 6 C -0.146 4.146 7 C -0.117 4.117 8 C -0.132 4.132 9 C 0.040 3.960 10 N -0.577 5.577 11 C 0.508 3.492 12 O -0.518 6.518 13 C 0.504 3.496 14 O -0.514 6.514 15 N -0.685 5.685 16 C 0.147 3.853 17 C -0.140 4.140 18 C 0.148 3.852 19 N -0.593 5.593 20 C -0.250 4.250 21 H 0.066 0.934 22 C 0.002 3.998 23 N -0.906 5.906 24 Si 0.906 3.094 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.289 1.289 28 C 0.174 3.826 29 C -0.148 4.148 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.166 0.834 42 H 0.409 0.591 43 H 0.087 0.913 44 H 0.060 0.940 45 H 0.055 0.945 46 H 0.021 0.979 47 H 0.057 0.943 48 H 0.254 0.746 49 H 0.021 0.979 50 H 0.098 0.902 51 H 0.056 0.944 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.309 11.903 -22.149 25.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.041 3.959 3 H 0.092 0.908 4 C -0.123 4.123 5 H 0.093 0.907 6 C -0.204 4.204 7 C -0.155 4.155 8 C -0.170 4.170 9 C -0.080 4.080 10 N -0.311 5.311 11 C 0.290 3.710 12 O -0.394 6.394 13 C 0.286 3.714 14 O -0.393 6.393 15 N -0.335 5.335 16 C 0.044 3.956 17 C -0.180 4.180 18 C 0.021 3.979 19 N -0.316 5.316 20 C -0.380 4.380 21 H 0.084 0.916 22 C -0.196 4.196 23 N -0.551 5.551 24 Si 0.736 3.264 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.216 1.216 28 C 0.047 3.953 29 C -0.188 4.188 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.182 0.818 42 H 0.245 0.755 43 H 0.105 0.895 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.039 0.961 47 H 0.076 0.924 48 H 0.064 0.936 49 H 0.039 0.961 50 H 0.116 0.884 51 H 0.075 0.925 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.486 11.915 -21.880 25.156 hybrid contribution -0.799 -0.458 0.206 0.943 sum 2.687 11.457 -21.673 24.662 Atomic orbital electron populations 1.22284 0.92477 1.03928 1.01280 1.21448 0.95951 0.95092 0.83402 0.90848 1.21565 0.96252 1.00109 0.94338 0.90719 1.21839 1.01797 1.00048 0.96677 1.21693 0.94914 1.00557 0.98347 1.21940 1.01308 0.99393 0.94367 1.23460 0.78058 1.02854 1.03632 1.48039 1.08349 1.55559 1.19104 1.20206 0.86056 0.80936 0.83759 1.90797 1.16658 1.55758 1.76220 1.20256 0.86656 0.80659 0.83878 1.90222 1.15433 1.60055 1.73633 1.46268 1.10912 1.50777 1.25527 1.21282 0.99143 0.90704 0.84448 1.22404 1.01346 0.94692 0.99566 1.20873 0.92629 0.97293 0.87088 1.44083 1.52755 1.02298 1.32485 1.19239 1.35096 0.93525 0.90153 0.91634 1.25156 1.00429 0.97873 0.96171 1.69956 1.47739 1.30653 1.06759 0.86168 0.79453 0.81471 0.79357 1.20261 1.21639 1.21573 1.20817 0.99303 0.82852 0.92327 1.22591 0.98365 1.00615 0.97250 0.90358 0.93226 0.91517 0.92517 0.92325 0.92034 0.91736 0.91854 0.90537 0.91641 0.91920 0.81820 0.75539 0.89469 0.92094 0.92639 0.96064 0.92422 0.93578 0.96069 0.88372 0.92508 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 7.50 37.16 0.28 -1.17 16 2 C 0.14 1.37 2.95 -67.60 -0.20 1.17 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.10 -0.82 2.34 -90.50 -0.21 -1.03 16 5 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 6 C -0.15 -0.90 8.97 37.16 0.33 -0.57 16 7 C -0.12 -0.86 5.17 -26.53 -0.14 -1.00 16 8 C -0.13 -1.13 6.11 -26.45 -0.16 -1.29 16 9 C 0.04 0.42 6.27 -3.71 -0.02 0.40 16 10 N -0.58 -6.55 2.97 -165.73 -0.49 -7.05 16 11 C 0.51 6.78 7.57 -11.58 -0.09 6.69 16 12 O -0.52 -7.43 12.04 5.50 0.07 -7.36 16 13 C 0.50 7.29 7.78 -11.58 -0.09 7.20 16 14 O -0.51 -8.07 12.67 5.49 0.07 -8.00 16 15 N -0.68 -9.90 5.07 -54.19 -0.27 -10.18 16 16 C 0.15 2.46 2.42 -67.89 -0.16 2.30 16 17 C -0.14 -2.45 5.65 -26.61 -0.15 -2.60 16 18 C 0.15 3.07 6.52 -3.71 -0.02 3.05 16 19 N -0.59 -14.50 2.99 -172.32 -0.52 -15.01 16 20 C -0.25 -6.72 9.60 -15.06 -0.14 -6.87 16 21 H 0.07 1.74 7.85 -52.49 -0.41 1.32 16 22 C 0.00 0.05 5.08 -17.43 -0.09 -0.04 16 23 N -0.91 -25.73 10.93 55.49 0.61 -25.12 16 24 Si 0.91 21.38 29.57 -169.99 -5.03 16.35 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 C 0.17 3.99 5.26 -3.71 -0.02 3.97 16 29 C -0.15 -2.67 5.55 -26.61 -0.15 -2.82 16 30 H 0.08 0.92 6.62 -51.93 -0.34 0.58 16 31 H 0.05 0.41 6.35 -51.93 -0.33 0.08 16 32 H 0.07 0.79 6.87 -51.92 -0.36 0.43 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.38 6.48 -51.93 -0.34 0.04 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.17 2.06 3.69 -57.23 -0.21 1.85 16 42 H 0.41 5.44 8.09 -40.82 -0.33 5.11 16 43 H 0.09 1.58 7.58 -51.93 -0.39 1.19 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 48 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.10 2.53 5.99 -51.93 -0.31 2.22 16 51 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 52 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 390.20 15.07 5.88 5.88 Total: -1.00 -28.91 390.20 -9.64 -38.55 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -8.91 Total: 4.56 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -1.04 Total: 7.38 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: -0.68 Total: -57.36 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.14 Total: -15.36 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.91 -9.64 -38.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588123782.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.492 kcal (2) G-P(sol) polarization free energy of solvation -28.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds