Wall clock time and date at job start Tue Mar 31 2020 22:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.69929 * 2 1 4 4 C 1.53186 * 109.59187 * 239.64815 * 2 1 3 5 5 H 1.09005 * 109.49689 * 305.52410 * 4 2 1 6 6 C 1.53003 * 109.49807 * 65.62224 * 4 2 1 7 7 C 1.53040 * 109.31640 * 185.57597 * 4 2 1 8 8 C 1.53352 * 109.60792 * 61.37242 * 7 4 2 9 9 C 1.53197 * 109.14754 * 298.71509 * 8 7 4 10 10 N 1.46924 * 109.58848 * 120.35215 * 2 1 3 11 11 C 1.34780 * 120.62816 * 353.38344 * 10 2 1 12 12 O 1.21344 * 119.99963 * 354.80477 * 11 10 2 13 13 C 1.49455 * 120.00052 * 174.80955 * 11 10 2 14 14 O 1.21354 * 119.99685 * 5.67435 * 13 11 10 15 15 N 1.34776 * 120.00224 * 185.68073 * 13 11 10 16 16 C 1.46495 * 120.00258 * 179.97438 * 15 13 11 17 17 C 1.53041 * 109.46260 * 275.02836 * 16 15 13 18 18 C 1.53187 * 109.31496 * 178.59834 * 17 16 15 19 19 N 1.46926 * 108.76515 * 54.65410 * 18 17 16 20 20 C 1.36938 * 120.63054 * 126.40316 * 19 18 17 21 21 H 1.08000 * 120.00089 * 329.69646 * 20 19 18 22 22 C 1.38806 * 119.99886 * 149.69624 * 20 19 18 23 23 N 1.31624 * 120.00221 * 349.98374 * 22 20 19 24 24 Si 1.86803 * 120.00064 * 169.98537 * 22 20 19 25 25 H 1.48499 * 109.46832 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47360 * 120.00107 * 24 22 20 27 27 H 1.48498 * 109.47012 * 240.00172 * 24 22 20 28 28 C 1.46924 * 118.73702 * 306.38604 * 19 18 17 29 29 C 1.53038 * 109.46228 * 154.97283 * 16 15 13 30 30 H 1.09000 * 109.47683 * 306.37376 * 1 2 3 31 31 H 1.09000 * 109.46895 * 66.38267 * 1 2 3 32 32 H 1.09008 * 109.46628 * 186.37482 * 1 2 3 33 33 H 1.08993 * 109.47084 * 60.00587 * 6 4 2 34 34 H 1.09002 * 109.46590 * 180.02562 * 6 4 2 35 35 H 1.08998 * 109.46937 * 299.99921 * 6 4 2 36 36 H 1.08998 * 109.46099 * 181.38037 * 7 4 2 37 37 H 1.08997 * 109.46129 * 301.35568 * 7 4 2 38 38 H 1.08997 * 109.68977 * 178.74733 * 8 7 4 39 39 H 1.08999 * 109.47372 * 58.54629 * 8 7 4 40 40 H 1.08999 * 109.58594 * 294.71611 * 9 8 7 41 41 H 1.08997 * 109.58615 * 174.43859 * 9 8 7 42 42 H 0.96999 * 119.99784 * 359.97438 * 15 13 11 43 43 H 1.09006 * 109.45868 * 34.99746 * 16 15 13 44 44 H 1.09001 * 109.49570 * 298.56656 * 17 16 15 45 45 H 1.09003 * 109.49304 * 58.65984 * 17 16 15 46 46 H 1.09005 * 109.59758 * 294.87105 * 18 17 16 47 47 H 1.09000 * 109.70190 * 174.50516 * 18 17 16 48 48 H 0.96998 * 119.99757 * 179.97438 * 23 22 20 49 49 H 1.09004 * 109.58950 * 293.81366 * 28 19 18 50 50 H 1.09002 * 109.70188 * 173.46326 * 28 19 18 51 51 H 1.09006 * 109.49664 * 301.33845 * 29 16 15 52 52 H 1.08991 * 109.49714 * 61.43449 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7292 -1.2454 5 1 1.6031 -1.7253 -1.2913 6 6 1.6540 0.0604 -2.4966 7 6 3.5676 -0.8478 -1.1701 8 6 3.9596 -1.6672 0.0655 9 6 3.4650 -0.9468 1.3238 10 7 2.0226 -0.6995 1.1945 11 6 1.1674 -1.1062 2.1536 12 8 -0.0081 -0.8139 2.0820 13 6 1.6670 -1.9172 3.3052 14 8 2.8563 -2.1224 3.4321 15 7 0.7967 -2.4207 4.2027 16 6 1.2863 -3.2161 5.3313 17 6 1.4530 -4.6732 4.8939 18 6 1.9982 -5.4949 6.0662 19 7 1.1136 -5.3103 7.2247 20 6 0.5795 -6.3913 7.8739 21 1 0.3734 -7.3007 7.3292 22 6 0.3029 -6.3180 9.2322 23 7 0.7308 -5.2917 9.9365 24 14 -0.6764 -7.6760 10.0605 25 1 -1.0371 -8.7091 9.0566 26 1 0.1436 -8.2940 11.1333 27 1 -1.9138 -7.1048 10.6503 28 6 0.8132 -3.9439 7.6735 29 6 0.2815 -3.1396 6.4831 30 1 -0.3634 0.6094 0.8274 31 1 -0.3633 0.4117 -0.9416 32 1 -0.3633 -1.0214 0.1141 33 1 2.0962 1.0556 -2.4505 34 1 2.0194 -0.4592 -3.3825 35 1 0.5687 0.1469 -2.5483 36 1 3.9379 -1.3446 -2.0668 37 1 4.0062 0.1475 -1.0990 38 1 5.0437 -1.7713 0.1082 39 1 3.5009 -2.6542 0.0074 40 1 3.9903 0.0022 1.4318 41 1 3.6521 -1.5695 2.1986 42 1 -0.1539 -2.2564 4.1014 43 1 2.2482 -2.8239 5.6618 44 1 0.4869 -5.0737 4.5869 45 1 2.1509 -4.7246 4.0582 46 1 3.0030 -5.1538 6.3158 47 1 2.0277 -6.5498 5.7933 48 1 0.5372 -5.2404 10.8856 49 1 1.7213 -3.4764 8.0542 50 1 0.0597 -3.9730 8.4606 51 1 0.1455 -2.0992 6.7786 52 1 -0.6734 -3.5546 6.1609 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588123782.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:05 Heat of formation + Delta-G solvation = -47.022198 kcal Electronic energy + Delta-G solvation = -30708.421569 eV Core-core repulsion = 26708.450415 eV Total energy + Delta-G solvation = -3999.971154 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.29629 -40.55099 -39.00279 -38.79571 -36.29390 -34.83538 -33.97266 -33.69504 -31.86024 -31.25643 -29.85751 -27.41352 -27.16926 -26.08483 -24.53825 -23.91671 -23.05571 -22.58727 -21.61755 -21.11294 -20.48516 -18.93932 -18.35323 -17.84414 -17.10498 -16.99132 -16.73864 -16.53611 -16.02059 -15.77559 -15.50190 -15.39797 -15.29463 -14.92978 -14.77537 -14.41274 -14.27339 -14.14232 -14.06739 -13.77082 -13.42873 -13.35210 -13.22783 -12.96477 -12.81564 -12.67496 -12.61250 -12.49890 -12.25740 -12.09060 -12.00823 -11.93470 -11.87831 -11.77243 -11.59719 -11.36910 -11.35154 -11.06883 -10.57725 -10.22657 -9.81862 -9.69217 -8.66548 -7.86580 -5.37061 0.31491 1.24616 1.47772 1.49457 1.59604 2.10463 2.41986 2.51226 3.22547 3.31288 3.66491 3.72369 3.73873 3.84148 3.90089 3.98885 4.08075 4.24415 4.26582 4.28797 4.43345 4.44430 4.58862 4.60574 4.64615 4.71615 4.78058 4.81778 4.83146 4.89727 4.94433 4.99100 5.04074 5.07814 5.11415 5.13195 5.17222 5.18553 5.26966 5.30140 5.38502 5.46340 5.48598 5.50627 5.64506 5.64918 5.74175 6.02597 6.23326 6.41872 6.74238 6.94856 7.15971 7.84209 8.36590 9.19614 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.028276 B = 0.002280 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.996002 B =12275.339143 C =12596.373430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.139 3.861 3 H 0.087 0.913 4 C -0.099 4.099 5 H 0.060 0.940 6 C -0.142 4.142 7 C -0.113 4.113 8 C -0.129 4.129 9 C 0.038 3.962 10 N -0.572 5.572 11 C 0.506 3.494 12 O -0.532 6.532 13 C 0.504 3.496 14 O -0.527 6.527 15 N -0.680 5.680 16 C 0.160 3.840 17 C -0.125 4.125 18 C 0.146 3.854 19 N -0.611 5.611 20 C -0.260 4.260 21 H 0.067 0.933 22 C -0.050 4.050 23 N -0.936 5.936 24 Si 0.970 3.030 25 H -0.267 1.267 26 H -0.293 1.293 27 H -0.289 1.289 28 C 0.179 3.821 29 C -0.132 4.132 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.052 0.948 40 H 0.076 0.924 41 H 0.146 0.854 42 H 0.416 0.584 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.068 0.932 46 H 0.015 0.985 47 H 0.059 0.941 48 H 0.251 0.749 49 H -0.001 1.001 50 H 0.067 0.933 51 H 0.076 0.924 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.392 12.600 -24.739 27.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.037 3.963 3 H 0.105 0.895 4 C -0.118 4.118 5 H 0.079 0.921 6 C -0.200 4.200 7 C -0.151 4.151 8 C -0.167 4.167 9 C -0.082 4.082 10 N -0.305 5.305 11 C 0.289 3.711 12 O -0.410 6.410 13 C 0.286 3.714 14 O -0.407 6.407 15 N -0.331 5.331 16 C 0.056 3.944 17 C -0.165 4.165 18 C 0.020 3.980 19 N -0.335 5.335 20 C -0.390 4.390 21 H 0.085 0.915 22 C -0.245 4.245 23 N -0.583 5.583 24 Si 0.798 3.202 25 H -0.191 1.191 26 H -0.220 1.220 27 H -0.216 1.216 28 C 0.052 3.948 29 C -0.172 4.172 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.162 0.838 42 H 0.253 0.747 43 H 0.093 0.907 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.033 0.967 47 H 0.078 0.922 48 H 0.060 0.940 49 H 0.017 0.983 50 H 0.086 0.914 51 H 0.094 0.906 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.583 12.624 -24.526 27.817 hybrid contribution -0.739 -0.649 0.956 1.371 sum 2.845 11.975 -23.571 26.591 Atomic orbital electron populations 1.22161 0.93010 1.02412 1.01690 1.21666 0.95563 0.95805 0.83223 0.89516 1.21532 0.96644 0.99434 0.94238 0.92106 1.21816 1.01936 1.00322 0.95891 1.21683 0.94353 1.00997 0.98062 1.21918 1.01995 0.98659 0.94100 1.23419 0.77595 1.03331 1.03840 1.48171 1.08587 1.54700 1.19017 1.19984 0.86116 0.81175 0.83861 1.90808 1.17111 1.56526 1.76534 1.20545 0.86378 0.80428 0.84036 1.90270 1.15955 1.60410 1.74033 1.46023 1.11390 1.50670 1.24976 1.20907 0.98134 0.90574 0.84765 1.22206 1.01478 0.94527 0.98327 1.20969 0.91934 0.98136 0.86977 1.44332 1.53609 1.02266 1.33244 1.19543 1.34729 0.94196 0.90536 0.91527 1.25892 1.01779 1.00050 0.96824 1.70122 1.49127 1.32351 1.06664 0.85168 0.77773 0.79075 0.78192 1.19126 1.22008 1.21607 1.20597 0.97505 0.83066 0.93590 1.22312 0.98403 1.00769 0.95714 0.92145 0.91036 0.93468 0.91553 0.91428 0.92007 0.90459 0.90780 0.89163 0.92954 0.90613 0.83780 0.74656 0.90694 0.91883 0.91362 0.96680 0.92239 0.94021 0.98267 0.91446 0.90583 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 7.50 71.98 0.54 -2.05 16 2 C 0.14 2.37 2.95 44.97 0.13 2.51 16 3 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 4 C -0.10 -1.34 2.34 -10.72 -0.03 -1.36 16 5 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 6 C -0.14 -1.33 8.97 71.98 0.65 -0.68 16 7 C -0.11 -1.33 5.17 30.73 0.16 -1.18 16 8 C -0.13 -1.95 6.11 30.78 0.19 -1.76 16 9 C 0.04 0.74 6.27 86.36 0.54 1.28 16 10 N -0.57 -12.23 2.97 -796.61 -2.37 -14.59 16 11 C 0.51 13.12 7.57 87.27 0.66 13.78 16 12 O -0.53 -14.93 12.04 -3.23 -0.04 -14.97 16 13 C 0.50 14.19 7.78 87.27 0.68 14.87 16 14 O -0.53 -16.21 12.67 -3.26 -0.04 -16.25 16 15 N -0.68 -19.00 5.07 -443.73 -2.25 -21.25 16 16 C 0.16 5.26 2.42 45.02 0.11 5.37 16 17 C -0.13 -4.29 5.65 30.67 0.17 -4.11 16 18 C 0.15 6.06 6.52 86.36 0.56 6.62 16 19 N -0.61 -30.29 2.99 -699.11 -2.09 -32.38 16 20 C -0.26 -14.09 9.60 84.03 0.81 -13.29 16 21 H 0.07 3.53 7.85 -2.91 -0.02 3.50 16 22 C -0.05 -2.77 5.08 84.86 0.43 -2.34 16 23 N -0.94 -54.58 10.93 21.65 0.24 -54.35 16 24 Si 0.97 44.42 29.57 68.60 2.03 46.45 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 27 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 28 C 0.18 8.43 5.26 86.36 0.45 8.88 16 29 C -0.13 -4.73 5.55 30.67 0.17 -4.56 16 30 H 0.06 1.37 6.62 -2.39 -0.02 1.36 16 31 H 0.07 1.03 6.35 -2.39 -0.02 1.01 16 32 H 0.05 1.08 6.87 -2.38 -0.02 1.07 16 33 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.06 0.58 6.48 -2.39 -0.02 0.57 16 36 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.15 3.50 3.69 -86.31 -0.32 3.18 16 42 H 0.42 10.58 8.09 -92.71 -0.75 9.83 16 43 H 0.07 2.70 7.58 -2.38 -0.02 2.68 16 44 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 47 H 0.06 2.41 7.93 -2.39 -0.02 2.39 16 48 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 49 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 50 H 0.07 3.60 5.99 -2.39 -0.01 3.59 16 51 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 52 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -62.95 390.20 1.56 -61.40 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -0.15 Total: 23.96 kcal Atomic # 6 Polarization: 15.75 SS G_CDS: 6.23 Total: 21.98 kcal Atomic # 7 Polarization: -116.10 SS G_CDS: -6.47 Total: -122.57 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.08 Total: -31.22 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -62.95 1.56 -61.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588123782.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.373 kcal (2) G-P(sol) polarization free energy of solvation -62.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds