Wall clock time and date at job start Tue Mar 31 2020 22:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.49066 * 2 1 4 4 C 1.53036 * 109.52596 * 120.07915 * 2 1 3 5 5 C 1.53041 * 109.53667 * 181.33387 * 4 2 1 6 6 C 1.53615 * 109.24392 * 298.51033 * 5 4 2 7 7 N 1.46930 * 108.54247 * 54.86079 * 6 5 4 8 8 C 1.34774 * 120.63341 * 126.37100 * 7 6 5 9 9 O 1.21351 * 120.00035 * 188.33891 * 8 7 6 10 10 C 1.49453 * 119.99889 * 8.32915 * 8 7 6 11 11 O 1.21350 * 120.00165 * 7.21922 * 10 8 7 12 12 N 1.34773 * 119.99896 * 187.22461 * 10 8 7 13 13 C 1.46497 * 119.99976 * 180.02562 * 12 10 8 14 14 C 1.53048 * 109.46163 * 204.99706 * 13 12 10 15 15 C 1.53188 * 109.31507 * 178.62689 * 14 13 12 16 16 N 1.46932 * 108.77507 * 54.63399 * 15 14 13 17 17 C 1.36934 * 120.62780 * 126.36512 * 16 15 14 18 18 H 1.07997 * 120.00309 * 330.45022 * 17 16 15 19 19 C 1.38814 * 119.99535 * 150.44568 * 17 16 15 20 20 N 1.31622 * 120.00164 * 332.68175 * 19 17 16 21 21 Si 1.86805 * 119.99893 * 152.68576 * 19 17 16 22 22 H 1.48500 * 109.47186 * 180.02562 * 21 19 17 23 23 H 1.48507 * 109.46975 * 299.99617 * 21 19 17 24 24 H 1.48495 * 109.47324 * 59.99845 * 21 19 17 25 25 C 1.46922 * 118.73769 * 306.64502 * 16 15 14 26 26 C 1.52766 * 109.01180 * 53.30890 * 25 16 15 27 27 C 1.46932 * 118.73564 * 306.09115 * 7 6 5 28 28 H 1.08991 * 109.58438 * 173.79052 * 27 7 6 29 29 C 1.52998 * 109.58474 * 294.07535 * 27 7 6 30 30 H 1.09008 * 109.47094 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47318 * 300.06005 * 1 2 3 32 32 H 1.09000 * 109.47481 * 60.06765 * 1 2 3 33 33 H 1.09001 * 109.46373 * 301.36002 * 4 2 1 34 34 H 1.09005 * 109.45773 * 61.31589 * 4 2 1 35 35 H 1.08994 * 109.49645 * 58.59218 * 5 4 2 36 36 H 1.09004 * 109.49198 * 178.68738 * 5 4 2 37 37 H 1.09003 * 109.74239 * 295.12020 * 6 5 4 38 38 H 1.09002 * 109.66699 * 174.55030 * 6 5 4 39 39 H 0.97000 * 120.00091 * 359.97438 * 12 10 8 40 40 H 1.08998 * 109.46241 * 324.96960 * 13 12 10 41 41 H 1.09000 * 109.49740 * 58.67502 * 14 13 12 42 42 H 1.09007 * 109.52109 * 298.59793 * 14 13 12 43 43 H 1.08997 * 109.58927 * 294.84883 * 15 14 13 44 44 H 1.08997 * 109.58578 * 174.41987 * 15 14 13 45 45 H 0.96993 * 120.00233 * 353.93647 * 20 19 17 46 46 H 1.09004 * 109.58365 * 173.14367 * 25 16 15 47 47 H 1.09003 * 109.59062 * 293.56736 * 25 16 15 48 48 H 1.08993 * 109.56310 * 185.55132 * 26 25 16 49 49 H 1.08998 * 109.35774 * 65.49448 * 26 25 16 50 50 H 1.08996 * 109.47654 * 60.00107 * 29 27 7 51 51 H 1.09003 * 109.47118 * 180.02562 * 29 27 7 52 52 H 1.09004 * 109.47272 * 299.99625 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0415 -0.7229 1.2481 5 6 3.5715 -0.6941 1.2653 6 6 4.1058 -1.4305 0.0275 7 7 3.5047 -0.8279 -1.1702 8 6 4.2807 -0.3848 -2.1791 9 8 3.7881 0.2452 -3.0918 10 6 5.7479 -0.6691 -2.1737 11 8 6.2199 -1.4072 -1.3340 12 7 6.5469 -0.1056 -3.1013 13 6 7.9851 -0.3847 -3.0963 14 6 8.7310 0.7706 -3.7680 15 6 10.2368 0.4914 -3.7304 16 7 10.4893 -0.8232 -4.3362 17 6 11.3910 -0.9591 -5.3577 18 1 11.5654 -0.1377 -6.0369 19 6 12.0809 -2.1526 -5.5203 20 7 12.3089 -2.9278 -4.4813 21 14 12.6857 -2.6586 -7.2137 22 1 13.3872 -3.9641 -7.1192 23 1 11.5282 -2.7849 -8.1355 24 1 13.6219 -1.6295 -7.7329 25 6 9.7513 -1.9881 -3.8291 26 6 8.2550 -1.6821 -3.8619 27 6 2.0413 -0.7234 -1.2498 28 1 1.7632 -0.1597 -2.1403 29 6 1.4300 -2.1242 -1.3177 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5147 0.8894 32 1 -0.3634 0.5128 -0.8906 33 1 1.6588 -0.2247 2.1389 34 1 1.6979 -1.7573 1.2350 35 1 3.9160 0.3399 1.2535 36 1 3.9346 -1.1887 2.1663 37 1 3.8351 -2.4850 0.0811 38 1 5.1903 -1.3313 -0.0187 39 1 6.1697 0.4842 -3.7726 40 1 8.3308 -0.4912 -2.0681 41 1 8.5197 1.6982 -3.2362 42 1 8.4037 0.8623 -4.8037 43 1 10.5825 0.4898 -2.6967 44 1 10.7652 1.2607 -4.2935 45 1 12.0738 -2.6258 -3.5900 46 1 9.9596 -2.8543 -4.4573 47 1 10.0566 -2.1960 -2.8036 48 1 7.7049 -2.5001 -3.3969 49 1 7.9322 -1.5678 -4.8967 50 1 1.7050 -2.6845 -0.4242 51 1 0.3445 -2.0445 -1.3772 52 1 1.8047 -2.6418 -2.2008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588123783.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:17 Heat of formation + Delta-G solvation = -50.838901 kcal Electronic energy + Delta-G solvation = -30635.884513 eV Core-core repulsion = 26635.747855 eV Total energy + Delta-G solvation = -4000.136658 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.21117 -39.52910 -38.09301 -37.56601 -35.00805 -33.94922 -32.78644 -32.27029 -30.33091 -29.53176 -29.26409 -26.69814 -25.99602 -24.65740 -23.21914 -22.59571 -22.44670 -21.64477 -20.41210 -19.51184 -18.82332 -17.75235 -17.23400 -17.15322 -16.30264 -16.08678 -15.55636 -15.18512 -14.66293 -14.56311 -14.27577 -14.10332 -14.02077 -13.69606 -13.53118 -13.42668 -13.37663 -13.12164 -13.05278 -12.86627 -12.48353 -12.47850 -12.01560 -11.97455 -11.72895 -11.56887 -11.34048 -11.31825 -11.08381 -10.83028 -10.77247 -10.69730 -10.57531 -10.47922 -10.29987 -10.08384 -10.00244 -9.41940 -9.20524 -8.96256 -8.88101 -8.35391 -6.91964 -6.09865 -3.26128 1.36641 2.22916 3.13314 3.41021 3.49463 3.53317 3.71070 4.19198 4.37639 4.40177 4.51574 4.58484 4.70442 4.83360 4.98189 5.03921 5.10398 5.10772 5.21371 5.24079 5.28530 5.34067 5.37640 5.44316 5.45377 5.55908 5.59170 5.63528 5.64777 5.74038 5.76916 5.82672 5.86990 5.88810 6.07776 6.10225 6.12541 6.20477 6.25753 6.36043 6.46476 6.60161 6.65761 6.74145 6.92629 7.00893 7.14028 7.28424 7.68693 7.99853 8.01629 8.56222 9.09268 9.82156 10.27403 11.18453 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026946 B = 0.002264 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.873545 B =12364.844301 C =12394.820668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.118 4.118 5 C -0.135 4.135 6 C 0.067 3.933 7 N -0.578 5.578 8 C 0.509 3.491 9 O -0.525 6.525 10 C 0.505 3.495 11 O -0.514 6.514 12 N -0.688 5.688 13 C 0.149 3.851 14 C -0.140 4.140 15 C 0.151 3.849 16 N -0.598 5.598 17 C -0.356 4.356 18 H 0.055 0.945 19 C -0.020 4.020 20 N -0.908 5.908 21 Si 1.061 2.939 22 H -0.285 1.285 23 H -0.293 1.293 24 H -0.292 1.292 25 C 0.156 3.844 26 C -0.143 4.143 27 C 0.137 3.863 28 H 0.100 0.900 29 C -0.165 4.165 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.143 0.857 39 H 0.408 0.592 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.020 0.980 44 H 0.062 0.938 45 H 0.269 0.731 46 H 0.079 0.921 47 H 0.020 0.980 48 H 0.057 0.943 49 H 0.061 0.939 50 H 0.063 0.937 51 H 0.073 0.927 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.192 5.363 11.075 26.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 H 0.092 0.908 4 C -0.156 4.156 5 C -0.173 4.173 6 C -0.054 4.054 7 N -0.311 5.311 8 C 0.292 3.708 9 O -0.402 6.402 10 C 0.286 3.714 11 O -0.392 6.392 12 N -0.339 5.339 13 C 0.046 3.954 14 C -0.180 4.180 15 C 0.024 3.976 16 N -0.322 5.322 17 C -0.485 4.485 18 H 0.073 0.927 19 C -0.223 4.223 20 N -0.547 5.547 21 Si 0.891 3.109 22 H -0.211 1.211 23 H -0.220 1.220 24 H -0.219 1.219 25 C 0.030 3.970 26 C -0.183 4.183 27 C 0.034 3.966 28 H 0.118 0.882 29 C -0.222 4.222 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.159 0.841 39 H 0.244 0.756 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.037 0.963 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.097 0.903 47 H 0.038 0.962 48 H 0.075 0.925 49 H 0.080 0.920 50 H 0.082 0.918 51 H 0.091 0.909 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.304 3.958 10.299 24.884 hybrid contribution -1.111 1.527 0.587 1.978 sum -23.416 5.484 10.886 26.398 Atomic orbital electron populations 1.21876 0.94269 1.02294 1.02063 1.21470 0.96028 0.99837 0.94535 0.90772 1.21660 0.95647 1.00970 0.97276 1.22020 0.95669 1.01415 0.98220 1.22978 1.03534 0.96586 0.82327 1.48042 1.06273 1.58887 1.17948 1.20276 0.87923 0.79909 0.82698 1.90735 1.75091 1.38472 1.35870 1.20069 0.87221 0.81619 0.82486 1.90495 1.75587 1.36459 1.36626 1.46200 1.09144 1.47367 1.31150 1.21207 0.76657 0.96426 1.01109 1.22360 0.99131 0.95978 1.00547 1.20843 0.90914 0.89588 0.96269 1.44145 1.45272 1.02216 1.40552 1.19901 1.19426 1.03410 1.05735 0.92712 1.25867 0.95892 0.96004 1.04568 1.70776 1.43249 1.41379 0.99318 0.83589 0.76020 0.76192 0.75123 1.21102 1.22032 1.21919 1.20802 0.86954 0.91860 0.97427 1.22398 1.00464 0.95681 0.99756 1.21313 0.78508 0.97270 0.99481 0.88183 1.22219 1.01177 0.96198 1.02655 0.92000 0.92327 0.92369 0.91718 0.91414 0.91675 0.90481 0.91328 0.84060 0.75598 0.89495 0.92240 0.91444 0.96253 0.91989 0.92019 0.90286 0.96185 0.92463 0.92006 0.91769 0.90850 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 8.71 37.16 0.32 -0.52 16 2 C -0.10 -0.74 2.65 -90.50 -0.24 -0.98 16 3 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.12 -0.80 4.96 -26.69 -0.13 -0.94 16 5 C -0.14 -1.08 6.10 -26.39 -0.16 -1.24 16 6 C 0.07 0.68 5.60 -3.49 -0.02 0.67 16 7 N -0.58 -6.55 2.68 -165.46 -0.44 -6.99 16 8 C 0.51 7.01 7.73 -11.59 -0.09 6.92 16 9 O -0.53 -8.08 15.93 5.50 0.09 -8.00 16 10 C 0.51 7.47 7.70 -11.59 -0.09 7.38 16 11 O -0.51 -8.31 12.85 5.50 0.07 -8.24 16 12 N -0.69 -10.02 5.07 -54.19 -0.27 -10.29 16 13 C 0.15 2.48 2.42 -67.89 -0.16 2.32 16 14 C -0.14 -2.30 5.55 -26.61 -0.15 -2.45 16 15 C 0.15 3.05 6.52 -3.71 -0.02 3.03 16 16 N -0.60 -14.66 2.82 -172.58 -0.49 -15.15 16 17 C -0.36 -9.78 9.43 -15.06 -0.14 -9.92 16 18 H 0.06 1.51 7.96 -52.49 -0.42 1.09 16 19 C -0.02 -0.57 4.60 -17.43 -0.08 -0.65 16 20 N -0.91 -27.04 12.54 55.49 0.70 -26.34 16 21 Si 1.06 25.05 30.00 -169.99 -5.10 19.95 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 C 0.16 3.63 4.77 -3.93 -0.02 3.61 16 26 C -0.14 -2.74 5.63 -26.83 -0.15 -2.89 16 27 C 0.14 1.28 2.81 -67.60 -0.19 1.09 16 28 H 0.10 1.07 7.00 -51.93 -0.36 0.71 16 29 C -0.16 -1.29 8.50 37.16 0.32 -0.97 16 30 H 0.06 0.32 6.38 -51.92 -0.33 -0.02 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.43 6.49 -51.93 -0.34 0.10 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.66 7.48 -51.93 -0.39 0.27 16 38 H 0.14 1.75 4.31 -54.78 -0.24 1.51 16 39 H 0.41 5.43 8.10 -40.82 -0.33 5.10 16 40 H 0.09 1.55 7.58 -51.93 -0.39 1.15 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 45 H 0.27 8.10 7.07 -40.82 -0.29 7.81 16 46 H 0.08 2.06 6.53 -51.93 -0.34 1.72 16 47 H 0.02 0.48 7.94 -51.93 -0.41 0.07 16 48 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 49 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 50 H 0.06 0.47 5.71 -51.93 -0.30 0.18 16 51 H 0.07 0.45 6.41 -51.93 -0.33 0.12 16 52 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 391.45 15.07 5.90 5.90 Total: -1.00 -30.87 391.45 -9.31 -40.18 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -8.75 Total: 4.53 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -1.01 Total: 4.45 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -0.51 Total: -58.77 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: 0.16 Total: -16.24 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.10 Total: 19.95 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.87 -9.31 -40.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588123783.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.659 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds