Wall clock time and date at job start Tue Mar 31 2020 22:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.49066 * 2 1 4 4 C 1.53036 * 109.52596 * 120.07915 * 2 1 3 5 5 C 1.53041 * 109.53667 * 181.33387 * 4 2 1 6 6 C 1.53615 * 109.24392 * 298.51033 * 5 4 2 7 7 N 1.46930 * 108.54247 * 54.86079 * 6 5 4 8 8 C 1.34774 * 120.63341 * 126.37100 * 7 6 5 9 9 O 1.21351 * 120.00035 * 188.33891 * 8 7 6 10 10 C 1.49453 * 119.99889 * 8.32915 * 8 7 6 11 11 O 1.21350 * 120.00165 * 7.21922 * 10 8 7 12 12 N 1.34773 * 119.99896 * 187.22461 * 10 8 7 13 13 C 1.46497 * 119.99976 * 180.02562 * 12 10 8 14 14 C 1.53048 * 109.46163 * 204.99706 * 13 12 10 15 15 C 1.53188 * 109.31507 * 178.62689 * 14 13 12 16 16 N 1.46932 * 108.77507 * 54.63399 * 15 14 13 17 17 C 1.36934 * 120.62780 * 126.36512 * 16 15 14 18 18 H 1.07997 * 120.00309 * 330.45022 * 17 16 15 19 19 C 1.38814 * 119.99535 * 150.44568 * 17 16 15 20 20 N 1.31622 * 120.00164 * 332.68175 * 19 17 16 21 21 Si 1.86805 * 119.99893 * 152.68576 * 19 17 16 22 22 H 1.48500 * 109.47186 * 180.02562 * 21 19 17 23 23 H 1.48507 * 109.46975 * 299.99617 * 21 19 17 24 24 H 1.48495 * 109.47324 * 59.99845 * 21 19 17 25 25 C 1.46922 * 118.73769 * 306.64502 * 16 15 14 26 26 C 1.52766 * 109.01180 * 53.30890 * 25 16 15 27 27 C 1.46932 * 118.73564 * 306.09115 * 7 6 5 28 28 H 1.08991 * 109.58438 * 173.79052 * 27 7 6 29 29 C 1.52998 * 109.58474 * 294.07535 * 27 7 6 30 30 H 1.09008 * 109.47094 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47318 * 300.06005 * 1 2 3 32 32 H 1.09000 * 109.47481 * 60.06765 * 1 2 3 33 33 H 1.09001 * 109.46373 * 301.36002 * 4 2 1 34 34 H 1.09005 * 109.45773 * 61.31589 * 4 2 1 35 35 H 1.08994 * 109.49645 * 58.59218 * 5 4 2 36 36 H 1.09004 * 109.49198 * 178.68738 * 5 4 2 37 37 H 1.09003 * 109.74239 * 295.12020 * 6 5 4 38 38 H 1.09002 * 109.66699 * 174.55030 * 6 5 4 39 39 H 0.97000 * 120.00091 * 359.97438 * 12 10 8 40 40 H 1.08998 * 109.46241 * 324.96960 * 13 12 10 41 41 H 1.09000 * 109.49740 * 58.67502 * 14 13 12 42 42 H 1.09007 * 109.52109 * 298.59793 * 14 13 12 43 43 H 1.08997 * 109.58927 * 294.84883 * 15 14 13 44 44 H 1.08997 * 109.58578 * 174.41987 * 15 14 13 45 45 H 0.96993 * 120.00233 * 353.93647 * 20 19 17 46 46 H 1.09004 * 109.58365 * 173.14367 * 25 16 15 47 47 H 1.09003 * 109.59062 * 293.56736 * 25 16 15 48 48 H 1.08993 * 109.56310 * 185.55132 * 26 25 16 49 49 H 1.08998 * 109.35774 * 65.49448 * 26 25 16 50 50 H 1.08996 * 109.47654 * 60.00107 * 29 27 7 51 51 H 1.09003 * 109.47118 * 180.02562 * 29 27 7 52 52 H 1.09004 * 109.47272 * 299.99625 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0415 -0.7229 1.2481 5 6 3.5715 -0.6941 1.2653 6 6 4.1058 -1.4305 0.0275 7 7 3.5047 -0.8279 -1.1702 8 6 4.2807 -0.3848 -2.1791 9 8 3.7881 0.2452 -3.0918 10 6 5.7479 -0.6691 -2.1737 11 8 6.2199 -1.4072 -1.3340 12 7 6.5469 -0.1056 -3.1013 13 6 7.9851 -0.3847 -3.0963 14 6 8.7310 0.7706 -3.7680 15 6 10.2368 0.4914 -3.7304 16 7 10.4893 -0.8232 -4.3362 17 6 11.3910 -0.9591 -5.3577 18 1 11.5654 -0.1377 -6.0369 19 6 12.0809 -2.1526 -5.5203 20 7 12.3089 -2.9278 -4.4813 21 14 12.6857 -2.6586 -7.2137 22 1 13.3872 -3.9641 -7.1192 23 1 11.5282 -2.7849 -8.1355 24 1 13.6219 -1.6295 -7.7329 25 6 9.7513 -1.9881 -3.8291 26 6 8.2550 -1.6821 -3.8619 27 6 2.0413 -0.7234 -1.2498 28 1 1.7632 -0.1597 -2.1403 29 6 1.4300 -2.1242 -1.3177 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5147 0.8894 32 1 -0.3634 0.5128 -0.8906 33 1 1.6588 -0.2247 2.1389 34 1 1.6979 -1.7573 1.2350 35 1 3.9160 0.3399 1.2535 36 1 3.9346 -1.1887 2.1663 37 1 3.8351 -2.4850 0.0811 38 1 5.1903 -1.3313 -0.0187 39 1 6.1697 0.4842 -3.7726 40 1 8.3308 -0.4912 -2.0681 41 1 8.5197 1.6982 -3.2362 42 1 8.4037 0.8623 -4.8037 43 1 10.5825 0.4898 -2.6967 44 1 10.7652 1.2607 -4.2935 45 1 12.0738 -2.6258 -3.5900 46 1 9.9596 -2.8543 -4.4573 47 1 10.0566 -2.1960 -2.8036 48 1 7.7049 -2.5001 -3.3969 49 1 7.9322 -1.5678 -4.8967 50 1 1.7050 -2.6845 -0.4242 51 1 0.3445 -2.0445 -1.3772 52 1 1.8047 -2.6418 -2.2008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588123783.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:14 Heat of formation + Delta-G solvation = -69.741962 kcal Electronic energy + Delta-G solvation = -30636.704211 eV Core-core repulsion = 26635.747855 eV Total energy + Delta-G solvation = -4000.956356 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -42.25422 -40.62577 -39.26193 -38.93338 -36.48342 -34.90462 -33.99844 -33.47288 -32.00599 -31.21792 -30.00657 -27.39042 -27.33205 -26.12369 -24.42489 -24.05744 -23.27463 -23.08734 -21.61347 -20.98483 -19.74338 -19.38262 -18.59330 -18.22013 -17.38247 -17.07254 -16.53745 -16.46974 -16.07746 -15.88211 -15.44739 -15.35152 -15.21838 -15.19353 -15.06946 -14.53948 -14.36729 -14.18189 -14.11304 -13.85134 -13.67354 -13.51118 -13.08866 -12.99202 -12.79826 -12.64296 -12.56483 -12.46973 -12.37790 -12.11101 -11.99777 -11.95273 -11.84905 -11.75482 -11.68471 -11.58503 -11.31136 -11.19814 -10.47636 -10.44375 -10.13548 -9.81729 -8.96541 -8.27143 -5.42185 0.23173 1.17219 1.58786 1.65923 1.84793 1.99978 2.35106 2.65242 3.16286 3.18514 3.51886 3.63557 3.69987 3.79555 3.86456 3.87873 4.02726 4.15362 4.16020 4.28191 4.31944 4.41506 4.45588 4.46717 4.52275 4.61674 4.68454 4.69939 4.83149 4.84951 4.89093 4.89637 4.91953 4.97294 4.99238 5.05971 5.08959 5.11618 5.13483 5.15849 5.22580 5.28915 5.35451 5.37241 5.44325 5.54214 5.86690 5.92497 6.15971 6.37585 6.62098 6.84621 7.04159 7.75388 8.21309 8.97739 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026946 B = 0.002264 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.873545 B =12364.844301 C =12394.820668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.061 0.939 4 C -0.114 4.114 5 C -0.131 4.131 6 C 0.065 3.935 7 N -0.571 5.571 8 C 0.508 3.492 9 O -0.547 6.547 10 C 0.505 3.495 11 O -0.529 6.529 12 N -0.681 5.681 13 C 0.162 3.838 14 C -0.125 4.125 15 C 0.145 3.855 16 N -0.616 5.616 17 C -0.358 4.358 18 H 0.053 0.947 19 C -0.073 4.073 20 N -0.937 5.937 21 Si 1.111 2.889 22 H -0.294 1.294 23 H -0.281 1.281 24 H -0.273 1.273 25 C 0.165 3.835 26 C -0.129 4.129 27 C 0.131 3.869 28 H 0.084 0.916 29 C -0.160 4.160 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.122 0.878 39 H 0.417 0.583 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.070 0.930 43 H 0.020 0.980 44 H 0.063 0.937 45 H 0.253 0.747 46 H 0.043 0.957 47 H 0.005 0.995 48 H 0.058 0.942 49 H 0.059 0.941 50 H 0.072 0.928 51 H 0.094 0.906 52 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.544 6.255 11.625 28.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.080 0.920 4 C -0.151 4.151 5 C -0.169 4.169 6 C -0.056 4.056 7 N -0.303 5.303 8 C 0.290 3.710 9 O -0.425 6.425 10 C 0.286 3.714 11 O -0.407 6.407 12 N -0.332 5.332 13 C 0.058 3.942 14 C -0.164 4.164 15 C 0.019 3.981 16 N -0.341 5.341 17 C -0.488 4.488 18 H 0.071 0.929 19 C -0.270 4.270 20 N -0.578 5.578 21 Si 0.936 3.064 22 H -0.220 1.220 23 H -0.207 1.207 24 H -0.199 1.199 25 C 0.038 3.962 26 C -0.169 4.169 27 C 0.029 3.971 28 H 0.102 0.898 29 C -0.217 4.217 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.139 0.861 39 H 0.255 0.745 40 H 0.096 0.904 41 H 0.112 0.888 42 H 0.089 0.911 43 H 0.038 0.962 44 H 0.081 0.919 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.023 0.977 48 H 0.076 0.924 49 H 0.078 0.922 50 H 0.091 0.909 51 H 0.113 0.887 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -24.705 4.885 10.879 27.433 hybrid contribution -0.413 1.272 0.507 1.430 sum -25.118 6.157 11.385 28.257 Atomic orbital electron populations 1.21857 0.92588 1.03136 1.02537 1.21443 0.97332 0.98862 0.93800 0.92037 1.21661 0.94438 1.01649 0.97398 1.21996 0.96743 1.00678 0.97444 1.22978 1.02414 0.97394 0.82844 1.48211 1.07177 1.57499 1.17399 1.20052 0.87416 0.80328 0.83198 1.90725 1.75167 1.39822 1.36811 1.20335 0.87821 0.81148 0.82047 1.90521 1.76115 1.36991 1.37118 1.45967 1.08103 1.47617 1.31540 1.20871 0.78070 0.95213 1.00084 1.22167 0.95878 0.97114 1.01271 1.21015 0.93727 0.87494 0.95843 1.44374 1.45168 1.03889 1.40650 1.20160 1.19165 1.03290 1.06187 0.92917 1.27202 0.96378 0.96520 1.06945 1.70901 1.45678 1.42130 0.99070 0.82917 0.76203 0.75823 0.71504 1.21967 1.20716 1.19887 1.20579 0.89466 0.90589 0.95551 1.22175 0.97220 0.97360 1.00118 1.21535 0.77121 0.98433 0.99997 0.89755 1.22202 1.02339 0.94859 1.02321 0.90941 0.91294 0.92534 0.90195 0.90415 0.92498 0.88991 0.90505 0.86110 0.74548 0.90363 0.88782 0.91124 0.96216 0.91864 0.93748 0.93805 0.97683 0.92377 0.92217 0.90926 0.88732 0.93767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.71 71.98 0.63 -0.62 16 2 C -0.10 -1.23 2.65 -10.72 -0.03 -1.25 16 3 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.11 -1.23 4.96 30.62 0.15 -1.08 16 5 C -0.13 -1.84 6.10 30.81 0.19 -1.65 16 6 C 0.06 1.25 5.60 86.50 0.48 1.73 16 7 N -0.57 -12.44 2.68 -795.76 -2.13 -14.57 16 8 C 0.51 13.73 7.73 87.27 0.67 14.41 16 9 O -0.55 -16.59 15.93 -3.25 -0.05 -16.64 16 10 C 0.50 14.67 7.70 87.27 0.67 15.34 16 11 O -0.53 -17.02 12.85 -3.25 -0.04 -17.06 16 12 N -0.68 -19.09 5.07 -443.74 -2.25 -21.34 16 13 C 0.16 5.25 2.42 45.02 0.11 5.36 16 14 C -0.12 -3.87 5.55 30.67 0.17 -3.70 16 15 C 0.14 5.78 6.52 86.36 0.56 6.34 16 16 N -0.62 -30.63 2.82 -699.92 -1.97 -32.60 16 17 C -0.36 -19.92 9.43 84.03 0.79 -19.12 16 18 H 0.05 2.91 7.96 -2.91 -0.02 2.88 16 19 C -0.07 -4.18 4.60 84.86 0.39 -3.79 16 20 N -0.94 -57.55 12.54 21.65 0.27 -57.28 16 21 Si 1.11 50.97 30.00 68.60 2.06 53.03 16 22 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 23 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 C 0.16 7.91 4.77 86.22 0.41 8.32 16 26 C -0.13 -4.96 5.63 30.53 0.17 -4.79 16 27 C 0.13 2.27 2.81 44.97 0.13 2.40 16 28 H 0.08 1.75 7.00 -2.39 -0.02 1.74 16 29 C -0.16 -2.18 8.50 71.98 0.61 -1.57 16 30 H 0.07 0.49 6.38 -2.38 -0.02 0.48 16 31 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.08 0.72 6.49 -2.38 -0.02 0.71 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.08 1.37 7.48 -2.39 -0.02 1.35 16 38 H 0.12 2.94 4.31 -47.51 -0.20 2.74 16 39 H 0.42 10.45 8.10 -92.71 -0.75 9.70 16 40 H 0.08 2.74 7.58 -2.39 -0.02 2.72 16 41 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 43 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.06 2.48 7.93 -2.39 -0.02 2.46 16 45 H 0.25 15.91 7.07 -92.71 -0.66 15.26 16 46 H 0.04 2.39 6.53 -2.38 -0.02 2.37 16 47 H 0.01 0.26 7.94 -2.39 -0.02 0.24 16 48 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 50 H 0.07 0.88 5.71 -2.39 -0.01 0.86 16 51 H 0.09 0.90 6.41 -2.39 -0.02 0.88 16 52 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -68.33 391.45 2.09 -66.24 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.09 Total: 23.89 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: 6.12 Total: 16.33 kcal Atomic # 7 Polarization: -119.72 SS G_CDS: -6.08 Total: -125.79 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -0.09 Total: -33.70 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 2.06 Total: 53.03 kcal Total: -68.33 2.09 -66.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588123783.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.497 kcal (2) G-P(sol) polarization free energy of solvation -68.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds