Wall clock time and date at job start Tue Mar 31 2020 20:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 H 1.08996 * 110.06191 * 2 1 4 4 C 1.54264 * 110.03671 * 238.57512 * 2 1 3 5 5 C 1.54883 * 104.20189 * 217.10996 * 4 2 1 6 6 C 1.54891 * 102.74908 * 37.94047 * 5 4 2 7 7 C 1.53879 * 110.03049 * 121.41239 * 2 1 3 8 8 H 1.08999 * 110.07260 * 238.58975 * 7 2 1 9 9 C 1.52999 * 110.03184 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47161 * 183.62153 * 9 7 2 11 11 C 1.34770 * 119.99991 * 179.97438 * 10 9 7 12 12 O 1.21348 * 119.99998 * 359.97438 * 11 10 9 13 13 C 1.49455 * 120.00121 * 179.97438 * 11 10 9 14 14 O 1.21348 * 119.99881 * 359.97438 * 13 11 10 15 15 N 1.34770 * 120.00121 * 179.97438 * 13 11 10 16 16 C 1.46495 * 120.00287 * 179.97438 * 15 13 11 17 17 C 1.53349 * 109.40953 * 275.12349 * 16 15 13 18 18 C 1.53193 * 109.14947 * 178.67665 * 17 16 15 19 19 N 1.46932 * 108.89365 * 54.58000 * 18 17 16 20 20 C 1.36929 * 120.62923 * 126.33970 * 19 18 17 21 21 H 1.07994 * 120.00472 * 332.28422 * 20 19 18 22 22 C 1.38823 * 119.99710 * 152.28799 * 20 19 18 23 23 N 1.31617 * 119.99601 * 342.59309 * 22 20 19 24 24 Si 1.86793 * 119.99892 * 162.59877 * 22 20 19 25 25 H 1.48502 * 109.47323 * 94.34576 * 24 22 20 26 26 H 1.48497 * 109.47157 * 214.34797 * 24 22 20 27 27 H 1.48496 * 109.47300 * 334.34614 * 24 22 20 28 28 C 1.46927 * 118.73576 * 306.31982 * 19 18 17 29 29 C 1.53038 * 109.46329 * 154.99660 * 16 15 13 30 30 H 1.08998 * 109.47384 * 298.59293 * 1 2 3 31 31 H 1.09007 * 109.47283 * 58.58704 * 1 2 3 32 32 H 1.08996 * 109.47540 * 178.58389 * 1 2 3 33 33 H 1.09001 * 110.48383 * 98.42953 * 4 2 1 34 34 H 1.09003 * 110.59697 * 335.84750 * 4 2 1 35 35 H 1.09003 * 110.75743 * 279.63001 * 5 4 2 36 36 H 1.09000 * 110.91970 * 156.32972 * 5 4 2 37 37 H 1.08999 * 110.48497 * 203.38245 * 6 5 4 38 38 H 1.08996 * 110.59646 * 80.79013 * 6 5 4 39 39 H 1.08996 * 109.46896 * 63.62019 * 9 7 2 40 40 H 1.09005 * 109.46746 * 303.61877 * 9 7 2 41 41 H 0.97000 * 119.99554 * 0.02562 * 10 9 7 42 42 H 0.97003 * 120.00387 * 359.97438 * 15 13 11 43 43 H 1.09005 * 109.45565 * 35.03044 * 16 15 13 44 44 H 1.08996 * 109.68615 * 58.71427 * 17 16 15 45 45 H 1.08996 * 109.47201 * 298.51534 * 17 16 15 46 46 H 1.08995 * 109.58815 * 294.71872 * 18 17 16 47 47 H 1.09000 * 109.58606 * 174.43227 * 18 17 16 48 48 H 0.97000 * 119.99465 * 180.02562 * 23 22 20 49 49 H 1.08997 * 109.58712 * 173.40018 * 28 19 18 50 50 H 1.09003 * 109.58223 * 293.67509 * 28 19 18 51 51 H 1.09002 * 109.49898 * 61.42593 * 29 16 15 52 52 H 1.09001 * 109.50239 * 301.32680 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9038 1.0238 0.0000 4 6 2.0584 -0.7556 -1.2367 5 6 3.3136 -1.5009 -0.7189 6 6 2.8873 -1.9407 0.7038 7 6 2.0570 -0.7535 1.2338 8 1 2.6864 -0.0957 1.8332 9 6 0.8860 -1.2673 2.0739 10 7 1.3994 -1.9065 3.2880 11 6 0.5435 -2.4357 4.1845 12 8 -0.6525 -2.3824 3.9862 13 6 1.0672 -3.0884 5.4228 14 8 2.2632 -3.1421 5.6208 15 7 0.2113 -3.6171 6.3195 16 6 0.7246 -4.2573 7.5330 17 6 1.0811 -5.7172 7.2273 18 6 1.6480 -6.3713 8.4912 19 7 0.6853 -6.2005 9.5880 20 6 0.2419 -7.2816 10.3018 21 1 0.2101 -8.2574 9.8401 22 6 -0.1668 -7.1234 11.6190 23 7 0.1797 -6.0458 12.2906 24 14 -1.2083 -8.4400 12.4383 25 1 -0.3276 -9.3764 13.1817 26 1 -2.1607 -7.8016 13.3819 27 1 -1.9645 -9.1886 11.4026 28 6 0.2080 -4.8475 9.9046 29 6 -0.3445 -4.2079 8.6269 30 1 -0.3634 0.4918 0.9023 31 1 -0.3634 0.5357 -0.8771 32 1 -0.3634 -1.0273 -0.0254 33 1 2.3297 -0.0538 -2.0254 34 1 1.3151 -1.4660 -1.5986 35 1 4.1709 -0.8292 -0.6749 36 1 3.5356 -2.3680 -1.3410 37 1 3.7636 -2.1037 1.3312 38 1 2.2776 -2.8431 0.6596 39 1 0.3145 -1.9928 1.4951 40 1 0.2414 -0.4320 2.3478 41 1 2.3554 -1.9482 3.4470 42 1 -0.7448 -3.5738 6.1614 43 1 1.6161 -3.7298 7.8725 44 1 1.8263 -5.7545 6.4328 45 1 0.1850 -6.2515 6.9116 46 1 2.5923 -5.8961 8.7565 47 1 1.8115 -7.4338 8.3108 48 1 -0.1056 -5.9354 13.2111 49 1 -0.5803 -4.9044 10.6552 50 1 1.0345 -4.2488 10.2876 51 1 -1.2272 -4.7563 8.2980 52 1 -0.6134 -3.1706 8.8263 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588125607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:01 Heat of formation + Delta-G solvation = -90.462610 kcal Electronic energy + Delta-G solvation = -29450.386348 eV Core-core repulsion = 25448.531476 eV Total energy + Delta-G solvation = -4001.854871 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.83602 -40.40883 -39.54262 -38.80721 -36.38376 -35.54203 -33.91709 -32.37774 -31.86241 -31.27035 -30.80741 -27.55752 -26.49824 -25.81512 -24.67886 -23.92178 -23.14861 -21.68851 -21.41150 -21.12019 -20.13576 -19.13200 -18.54051 -18.11546 -17.32631 -17.02363 -16.91074 -16.49045 -16.21537 -15.77392 -15.48037 -15.44601 -15.34813 -14.97244 -14.76928 -14.62985 -14.50445 -14.19339 -14.12012 -13.51732 -13.39084 -13.22948 -13.03617 -13.00052 -12.88492 -12.61459 -12.51126 -12.23817 -12.04036 -11.90718 -11.88502 -11.80888 -11.65246 -11.59870 -11.57171 -11.45281 -11.38214 -11.27460 -10.68957 -10.56011 -10.28287 -10.17405 -8.71507 -7.88225 -5.32632 0.32717 1.29987 1.48107 1.49928 1.59827 2.12583 2.52089 2.61368 3.27925 3.39443 3.57264 3.64253 3.66168 3.71368 3.83548 3.98110 4.24584 4.27872 4.34562 4.41905 4.43648 4.47900 4.51559 4.62964 4.65852 4.70510 4.72593 4.81637 4.82259 4.90309 4.95302 4.97225 5.01559 5.04721 5.12188 5.12639 5.15532 5.27088 5.28001 5.33057 5.36457 5.39168 5.46432 5.47985 5.56262 5.64605 5.69941 5.92608 6.34640 6.39159 6.72272 6.93282 7.14388 7.84140 8.36318 9.19054 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.033418 B = 0.001843 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.670248 B =15188.400526 C =15481.078259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.084 4.084 3 H 0.083 0.917 4 C -0.120 4.120 5 C -0.124 4.124 6 C -0.126 4.126 7 C -0.097 4.097 8 H 0.088 0.912 9 C 0.122 3.878 10 N -0.688 5.688 11 C 0.512 3.488 12 O -0.542 6.542 13 C 0.504 3.496 14 O -0.545 6.545 15 N -0.683 5.683 16 C 0.160 3.840 17 C -0.126 4.126 18 C 0.145 3.855 19 N -0.609 5.609 20 C -0.263 4.263 21 H 0.067 0.933 22 C -0.050 4.050 23 N -0.934 5.934 24 Si 0.967 3.033 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.270 1.270 28 C 0.179 3.821 29 C -0.132 4.132 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.418 0.582 42 H 0.417 0.583 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.014 0.986 47 H 0.059 0.941 48 H 0.251 0.749 49 H 0.064 0.936 50 H 0.000 1.000 51 H 0.068 0.932 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.768 13.546 -27.635 30.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.103 4.103 3 H 0.102 0.898 4 C -0.158 4.158 5 C -0.161 4.161 6 C -0.163 4.163 7 C -0.116 4.116 8 H 0.106 0.894 9 C 0.000 4.000 10 N -0.341 5.341 11 C 0.292 3.708 12 O -0.420 6.420 13 C 0.285 3.715 14 O -0.422 6.422 15 N -0.335 5.335 16 C 0.056 3.944 17 C -0.166 4.166 18 C 0.019 3.981 19 N -0.333 5.333 20 C -0.393 4.393 21 H 0.085 0.915 22 C -0.245 4.245 23 N -0.580 5.580 24 Si 0.795 3.205 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.195 1.195 28 C 0.052 3.948 29 C -0.171 4.171 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.255 0.745 42 H 0.254 0.746 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.032 0.968 47 H 0.078 0.922 48 H 0.060 0.940 49 H 0.082 0.918 50 H 0.018 0.982 51 H 0.087 0.913 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.726 13.583 -27.493 30.786 hybrid contribution -0.371 -0.685 1.031 1.293 sum 2.354 12.897 -26.461 29.531 Atomic orbital electron populations 1.22025 0.95008 1.01997 1.02173 1.21700 0.95750 0.99587 0.93288 0.89817 1.22466 0.97212 0.99051 0.97039 1.22476 0.97964 1.00187 0.95503 1.22506 0.99490 0.97189 0.97149 1.22065 0.95382 0.97666 0.96453 0.89380 1.21981 0.97164 0.97311 0.83589 1.45854 1.11105 1.56204 1.20897 1.19993 0.86498 0.79867 0.84478 1.90753 1.15796 1.58202 1.77260 1.20334 0.86557 0.79753 0.84889 1.90751 1.15808 1.58580 1.77103 1.45979 1.11179 1.55719 1.20616 1.20949 0.97393 0.92971 0.83108 1.22265 1.01190 0.94970 0.98178 1.20964 0.91012 0.98663 0.87461 1.44351 1.48511 1.03712 1.36722 1.19503 1.37174 0.89852 0.92734 0.91491 1.25789 1.02517 0.99790 0.96441 1.70176 1.47789 1.30426 1.09624 0.85270 0.78502 0.78653 0.78048 1.21423 1.21796 1.19452 1.20571 0.96784 0.83952 0.93476 1.22294 0.97843 1.01264 0.95706 0.92411 0.91923 0.92676 0.90839 0.91667 0.90919 0.91337 0.91169 0.92060 0.91001 0.90589 0.74508 0.74597 0.90923 0.91435 0.91685 0.96835 0.92233 0.94014 0.91798 0.98175 0.91320 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 7.89 71.98 0.57 -0.92 16 2 C -0.08 -0.74 3.50 -10.07 -0.04 -0.77 16 3 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 4 C -0.12 -1.00 6.36 31.67 0.20 -0.79 16 5 C -0.12 -1.09 6.91 31.88 0.22 -0.87 16 6 C -0.13 -1.33 6.02 31.67 0.19 -1.14 16 7 C -0.10 -0.99 2.98 -10.07 -0.03 -1.02 16 8 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 9 C 0.12 1.76 3.77 86.38 0.33 2.09 16 10 N -0.69 -12.61 5.38 -464.40 -2.50 -15.11 16 11 C 0.51 12.57 7.89 87.27 0.69 13.26 16 12 O -0.54 -15.34 16.48 -3.24 -0.05 -15.39 16 13 C 0.50 14.18 7.85 87.27 0.69 14.87 16 14 O -0.54 -17.54 16.14 -3.24 -0.05 -17.59 16 15 N -0.68 -19.23 5.07 -443.26 -2.25 -21.48 16 16 C 0.16 5.33 2.42 45.12 0.11 5.44 16 17 C -0.13 -4.38 5.68 30.78 0.17 -4.20 16 18 C 0.15 6.11 6.50 86.36 0.56 6.67 16 19 N -0.61 -30.40 3.00 -699.08 -2.09 -32.49 16 20 C -0.26 -14.33 9.58 84.04 0.81 -13.52 16 21 H 0.07 3.56 7.89 -2.91 -0.02 3.54 16 22 C -0.05 -2.77 4.91 84.87 0.42 -2.35 16 23 N -0.93 -54.74 11.19 21.65 0.24 -54.50 16 24 Si 0.97 44.51 29.59 68.60 2.03 46.54 16 25 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 26 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 27 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 28 C 0.18 8.43 5.31 86.36 0.46 8.89 16 29 C -0.13 -4.70 5.55 30.67 0.17 -4.53 16 30 H 0.06 0.59 6.65 -2.39 -0.02 0.58 16 31 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.05 0.60 6.82 -2.39 -0.02 0.58 16 33 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.06 0.59 7.84 -2.39 -0.02 0.57 16 35 H 0.07 0.57 8.14 -2.39 -0.02 0.56 16 36 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 38 H 0.06 0.77 7.78 -2.39 -0.02 0.75 16 39 H 0.07 1.14 6.86 -2.39 -0.02 1.13 16 40 H 0.08 1.15 6.51 -2.38 -0.02 1.14 16 41 H 0.42 6.87 7.78 -92.71 -0.72 6.15 16 42 H 0.42 10.56 8.07 -92.71 -0.75 9.81 16 43 H 0.07 2.67 7.58 -2.38 -0.02 2.66 16 44 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.06 2.44 7.93 -2.39 -0.02 2.42 16 48 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 49 H 0.06 3.40 6.04 -2.39 -0.01 3.38 16 50 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 51 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 52 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -65.34 403.18 0.29 -65.05 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: -0.55 Total: 23.88 kcal Atomic # 6 Polarization: 15.59 SS G_CDS: 5.51 Total: 21.10 kcal Atomic # 7 Polarization: -116.99 SS G_CDS: -6.60 Total: -123.58 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -0.11 Total: -32.99 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -65.34 0.29 -65.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588125607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.414 kcal (2) G-P(sol) polarization free energy of solvation -65.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds