Wall clock time and date at job start Tue Mar 31 2020 20:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.01905 * 2 1 4 4 C 1.53878 * 110.03251 * 121.39152 * 2 1 3 5 5 C 1.54265 * 106.59802 * 119.28632 * 4 2 1 6 6 C 1.54886 * 104.19809 * 23.60836 * 5 4 2 7 7 C 1.54268 * 110.03460 * 238.55815 * 2 1 3 8 8 H 1.09000 * 110.48465 * 335.78525 * 7 2 1 9 9 C 1.52998 * 110.48800 * 98.42529 * 7 2 1 10 10 N 1.46493 * 109.47163 * 185.00356 * 9 7 2 11 11 C 1.34784 * 119.99828 * 180.02562 * 10 9 7 12 12 O 1.21351 * 120.00268 * 359.97438 * 11 10 9 13 13 C 1.49445 * 119.99869 * 180.02562 * 11 10 9 14 14 O 1.21352 * 120.00398 * 359.97438 * 13 11 10 15 15 N 1.34777 * 120.00187 * 179.97438 * 13 11 10 16 16 C 1.46503 * 120.00266 * 179.97438 * 15 13 11 17 17 C 1.53038 * 109.45949 * 275.02533 * 16 15 13 18 18 C 1.53194 * 109.31113 * 178.60068 * 17 16 15 19 19 N 1.46923 * 108.76525 * 54.65659 * 18 17 16 20 20 C 1.36933 * 120.63056 * 126.35853 * 19 18 17 21 21 H 1.07996 * 120.00352 * 331.86510 * 20 19 18 22 22 C 1.38812 * 119.99985 * 151.86382 * 20 19 18 23 23 N 1.31622 * 119.99994 * 343.05984 * 22 20 19 24 24 Si 1.86798 * 120.00269 * 163.06484 * 22 20 19 25 25 H 1.48497 * 109.46995 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47287 * 119.99801 * 24 22 20 27 27 H 1.48502 * 109.47278 * 240.00052 * 24 22 20 28 28 C 1.46925 * 118.73940 * 306.38397 * 19 18 17 29 29 C 1.53042 * 109.45752 * 154.97095 * 16 15 13 30 30 H 1.08999 * 109.47166 * 300.06367 * 1 2 3 31 31 H 1.09005 * 109.47000 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47003 * 60.06139 * 1 2 3 33 33 H 1.08996 * 110.02904 * 238.56855 * 4 2 1 34 34 H 1.09003 * 110.02955 * 0.02562 * 4 2 1 35 35 H 1.08996 * 110.48557 * 142.28816 * 5 4 2 36 36 H 1.09000 * 110.48705 * 264.79944 * 5 4 2 37 37 H 1.09003 * 110.75692 * 80.37539 * 6 5 4 38 38 H 1.09003 * 110.75757 * 203.56007 * 6 5 4 39 39 H 1.09002 * 109.47254 * 305.00365 * 9 7 2 40 40 H 1.09002 * 109.47227 * 64.99884 * 9 7 2 41 41 H 0.96992 * 120.00198 * 359.97438 * 10 9 7 42 42 H 0.97003 * 119.99862 * 359.97438 * 15 13 11 43 43 H 1.08996 * 109.45681 * 35.00187 * 16 15 13 44 44 H 1.08998 * 109.49726 * 298.56549 * 17 16 15 45 45 H 1.08996 * 109.49520 * 58.66034 * 17 16 15 46 46 H 1.08997 * 109.59871 * 294.86533 * 18 17 16 47 47 H 1.08997 * 109.69951 * 174.50552 * 18 17 16 48 48 H 0.97004 * 119.99926 * 179.97438 * 23 22 20 49 49 H 1.09002 * 109.58250 * 293.82049 * 28 19 18 50 50 H 1.09002 * 109.70528 * 173.46710 * 28 19 18 51 51 H 1.09002 * 109.49942 * 301.32960 * 29 16 15 52 52 H 1.08993 * 109.49774 * 61.40125 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0571 -0.7530 1.2341 5 6 2.8875 -1.9403 0.7044 6 6 3.3137 -1.5011 -0.7184 7 6 2.0585 -0.7560 -1.2365 8 1 1.3143 -1.4667 -1.5960 9 6 2.4392 0.2286 -2.3439 10 7 2.8241 -0.5140 -3.5466 11 6 3.2013 0.1504 -4.6570 12 8 3.2217 1.3637 -4.6606 13 6 3.5933 -0.6072 -5.8841 14 8 3.5725 -1.8205 -5.8807 15 7 3.9700 0.0571 -6.9946 16 6 4.3549 -0.6855 -8.1974 17 6 5.8321 -1.0745 -8.1055 18 6 6.2220 -1.8808 -9.3484 19 7 5.8768 -1.1012 -10.5450 20 6 6.8174 -0.8465 -11.5070 21 1 7.8624 -0.7925 -11.2397 22 6 6.4277 -0.6577 -12.8259 23 7 5.2325 -1.0427 -13.2205 24 14 7.5996 0.1426 -14.0406 25 1 8.8708 0.4816 -13.3521 26 1 7.8757 -0.7987 -15.1555 27 1 6.9836 1.3815 -14.5799 28 6 4.5034 -0.5995 -10.6894 29 6 4.1327 0.1921 -9.4313 30 1 -0.3633 0.5148 0.8894 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5129 -0.8906 33 1 2.6867 -0.0946 1.8324 34 1 1.2229 -1.1189 1.8327 35 1 3.7637 -2.1031 1.3319 36 1 2.2778 -2.8428 0.6605 37 1 4.1711 -0.8294 -0.6748 38 1 3.5357 -2.3684 -1.3402 39 1 1.5866 0.8691 -2.5696 40 1 3.2768 0.8424 -2.0123 41 1 2.8081 -1.4838 -3.5436 42 1 3.9863 1.0270 -6.9975 43 1 3.7465 -1.5862 -8.2781 44 1 6.4428 -0.1734 -8.0499 45 1 5.9941 -1.6799 -7.2137 46 1 5.6771 -2.8247 -9.3576 47 1 7.2939 -2.0777 -9.3373 48 1 4.9601 -0.9104 -14.1421 49 1 3.8184 -1.4391 -10.8079 50 1 4.4394 0.0504 -11.5621 51 1 3.0850 0.4882 -9.4834 52 1 4.7591 1.0814 -9.3628 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588125609.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:26 Heat of formation + Delta-G solvation = -76.824268 kcal Electronic energy + Delta-G solvation = -29278.024059 eV Core-core repulsion = 25276.760591 eV Total energy + Delta-G solvation = -4001.263468 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.71831 -39.44749 -38.53730 -37.31251 -35.25433 -34.32627 -32.14063 -31.67992 -30.42924 -30.19417 -29.48536 -26.59399 -25.62447 -24.62177 -23.26507 -22.28054 -21.67218 -20.92739 -20.57309 -19.89456 -19.37946 -18.32642 -16.92816 -16.75716 -16.17179 -15.98416 -15.60103 -15.32394 -15.00566 -14.72560 -14.64558 -14.07360 -14.01434 -13.68030 -13.63976 -13.52540 -13.34558 -13.02685 -12.89509 -12.62155 -12.42446 -12.38431 -11.75069 -11.52058 -11.48572 -11.38730 -11.18265 -11.15148 -11.11629 -11.04855 -10.87176 -10.83920 -10.74833 -10.51172 -10.31634 -10.06863 -9.85227 -9.70132 -9.45760 -9.43228 -8.86754 -8.48464 -6.70890 -5.81288 -3.23636 1.43737 2.35246 3.24621 3.36443 3.44713 3.46922 3.63986 4.04743 4.12313 4.18378 4.48412 4.51065 4.73071 4.82522 4.86214 4.97039 5.01372 5.11294 5.13745 5.28254 5.29182 5.37041 5.41908 5.42648 5.45786 5.52113 5.53009 5.58508 5.68593 5.72650 5.77253 5.80105 5.90048 5.96169 6.02808 6.04509 6.16354 6.26360 6.46867 6.48890 6.53960 6.71361 6.77139 6.92504 6.96998 7.28799 7.41589 7.60326 7.74138 7.78915 8.07605 8.42719 9.18862 9.81892 10.38582 11.27706 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034796 B = 0.001796 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.492636 B =15586.211385 C =15864.652263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 H 0.076 0.924 4 C -0.121 4.121 5 C -0.125 4.125 6 C -0.123 4.123 7 C -0.103 4.103 8 H 0.085 0.915 9 C 0.125 3.875 10 N -0.702 5.702 11 C 0.507 3.493 12 O -0.522 6.522 13 C 0.502 3.498 14 O -0.525 6.525 15 N -0.690 5.690 16 C 0.148 3.852 17 C -0.140 4.140 18 C 0.148 3.852 19 N -0.593 5.593 20 C -0.252 4.252 21 H 0.067 0.933 22 C 0.002 3.998 23 N -0.903 5.903 24 Si 0.902 3.098 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.289 1.289 28 C 0.174 3.826 29 C -0.148 4.148 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.413 0.587 42 H 0.408 0.592 43 H 0.086 0.914 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.021 0.979 47 H 0.058 0.942 48 H 0.254 0.746 49 H 0.022 0.978 50 H 0.093 0.907 51 H 0.056 0.944 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.653 1.453 27.703 29.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 H 0.094 0.906 4 C -0.158 4.158 5 C -0.162 4.162 6 C -0.161 4.161 7 C -0.121 4.121 8 H 0.104 0.896 9 C 0.002 3.998 10 N -0.356 5.356 11 C 0.288 3.712 12 O -0.398 6.398 13 C 0.282 3.718 14 O -0.402 6.402 15 N -0.341 5.341 16 C 0.046 3.954 17 C -0.180 4.180 18 C 0.021 3.979 19 N -0.315 5.315 20 C -0.381 4.381 21 H 0.084 0.916 22 C -0.197 4.197 23 N -0.547 5.547 24 Si 0.732 3.268 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.216 1.216 28 C 0.048 3.952 29 C -0.188 4.188 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.249 0.751 42 H 0.244 0.756 43 H 0.104 0.896 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.039 0.961 47 H 0.076 0.924 48 H 0.064 0.936 49 H 0.040 0.960 50 H 0.111 0.889 51 H 0.075 0.925 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.709 1.471 27.515 28.898 hybrid contribution 0.489 0.455 -0.617 0.909 sum -8.220 1.926 26.898 28.192 Atomic orbital electron populations 1.21910 0.94689 1.01934 1.01860 1.21706 0.95881 0.99584 0.93593 0.90567 1.22226 0.99503 0.97046 0.97072 1.22338 0.99611 0.98051 0.96229 1.22620 0.97103 1.00117 0.96249 1.22362 0.98242 0.97196 0.94346 0.89627 1.21539 1.00706 0.94268 0.83278 1.45761 1.66656 1.11537 1.11652 1.20391 0.78330 0.87755 0.84772 1.90756 1.51780 1.13465 1.83806 1.20017 0.79325 0.87797 0.84650 1.90757 1.52745 1.13191 1.83465 1.46227 1.64508 1.11420 1.11925 1.21241 0.96439 0.95552 0.82210 1.22403 0.94899 1.01029 0.99713 1.20868 0.98532 0.92497 0.85990 1.44098 1.08348 1.59259 1.19820 1.19228 0.89227 1.42896 0.86794 0.91560 1.25060 0.97103 1.00713 0.96803 1.70033 1.19904 1.48424 1.16378 0.86222 0.80432 0.78965 0.81149 1.20252 1.21718 1.21556 1.20754 0.85097 0.95855 0.93514 1.22573 1.00337 0.99528 0.96340 0.92553 0.92502 0.92521 0.91776 0.91602 0.91617 0.91565 0.91074 0.91188 0.90983 0.90882 0.75100 0.75631 0.89565 0.92032 0.92635 0.96084 0.92391 0.93626 0.95985 0.88873 0.92487 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 8.84 37.16 0.33 -0.41 16 2 C -0.09 -0.47 3.07 -89.50 -0.27 -0.75 16 3 H 0.08 0.42 7.84 -51.93 -0.41 0.01 16 4 C -0.12 -0.60 6.46 -25.61 -0.17 -0.77 16 5 C -0.12 -0.66 6.83 -25.07 -0.17 -0.83 16 6 C -0.12 -0.74 6.19 -24.74 -0.15 -0.89 16 7 C -0.10 -0.61 2.42 -88.96 -0.22 -0.83 16 8 H 0.09 0.51 7.85 -51.93 -0.41 0.10 16 9 C 0.13 1.00 4.96 -4.05 -0.02 0.98 16 10 N -0.70 -6.95 5.44 -60.73 -0.33 -7.28 16 11 C 0.51 6.61 7.89 -11.58 -0.09 6.52 16 12 O -0.52 -7.81 16.48 5.50 0.09 -7.72 16 13 C 0.50 7.44 7.85 -11.59 -0.09 7.35 16 14 O -0.52 -8.79 16.14 5.50 0.09 -8.70 16 15 N -0.69 -10.28 5.07 -54.20 -0.27 -10.55 16 16 C 0.15 2.56 2.42 -67.89 -0.16 2.39 16 17 C -0.14 -2.52 5.65 -26.61 -0.15 -2.67 16 18 C 0.15 3.13 6.52 -3.71 -0.02 3.10 16 19 N -0.59 -14.63 2.99 -172.32 -0.52 -15.15 16 20 C -0.25 -6.83 9.58 -15.06 -0.14 -6.97 16 21 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 22 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 23 N -0.90 -25.88 11.19 55.49 0.62 -25.26 16 24 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 C 0.17 4.05 5.30 -3.71 -0.02 4.03 16 29 C -0.15 -2.70 5.55 -26.61 -0.15 -2.85 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.31 7.67 -51.93 -0.40 -0.09 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.46 7.97 -51.93 -0.41 0.04 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.62 8.02 -51.93 -0.42 0.20 16 41 H 0.41 3.70 7.91 -40.82 -0.32 3.38 16 42 H 0.41 5.58 8.07 -40.82 -0.33 5.25 16 43 H 0.09 1.62 7.58 -51.93 -0.39 1.22 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.06 1.20 7.93 -51.93 -0.41 0.78 16 48 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 49 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.09 2.41 6.06 -51.93 -0.31 2.10 16 51 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 52 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 409.74 15.07 6.17 6.17 Total: -1.00 -30.65 409.74 -10.05 -40.69 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -9.28 Total: 3.97 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: -1.59 Total: 7.35 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -0.50 Total: -58.24 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.18 Total: -16.41 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -30.65 -10.05 -40.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588125609.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.130 kcal (2) G-P(sol) polarization free energy of solvation -30.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds