Wall clock time and date at job start Tue Mar 31 2020 22:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 108.31711 * 2 1 4 4 C 1.52573 * 108.51323 * 242.38784 * 2 1 3 5 5 C 1.50870 * 109.35827 * 153.72913 * 4 2 1 6 6 C 1.53947 * 110.09994 * 91.88871 * 5 4 2 7 7 N 1.47607 * 112.13795 * 319.43398 * 6 5 4 8 8 C 1.34774 * 118.64059 * 137.86445 * 7 6 5 9 9 O 1.21349 * 120.00448 * 358.24955 * 8 7 6 10 10 C 1.49455 * 119.99582 * 178.24474 * 8 7 6 11 11 O 1.21349 * 120.00144 * 6.11296 * 10 8 7 12 12 N 1.34780 * 119.99630 * 186.10987 * 10 8 7 13 13 C 1.46503 * 119.99621 * 180.02562 * 12 10 8 14 14 C 1.53045 * 109.45746 * 275.06439 * 13 12 10 15 15 C 1.53189 * 109.31152 * 178.61303 * 14 13 12 16 16 N 1.46928 * 108.77595 * 54.63896 * 15 14 13 17 17 C 1.36939 * 120.63228 * 126.36614 * 16 15 14 18 18 H 1.08004 * 120.00048 * 215.31281 * 17 16 15 19 19 C 1.38811 * 119.99762 * 35.31016 * 17 16 15 20 20 N 1.31613 * 120.00456 * 355.62363 * 19 17 16 21 21 Si 1.86800 * 119.99730 * 175.62274 * 19 17 16 22 22 H 1.48502 * 109.47141 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47474 * 120.00029 * 21 19 17 24 24 H 1.48504 * 109.47207 * 240.00230 * 21 19 17 25 25 C 1.46920 * 118.73836 * 306.39238 * 16 15 14 26 26 C 1.53044 * 109.45961 * 155.00214 * 13 12 10 27 27 C 1.44575 * 122.71149 * 317.86930 * 7 6 5 28 28 C 1.47088 * 108.51532 * 117.61523 * 2 1 3 29 29 H 1.09004 * 109.46794 * 302.38126 * 1 2 3 30 30 H 1.09001 * 109.47303 * 62.38584 * 1 2 3 31 31 H 1.09002 * 109.47169 * 182.38724 * 1 2 3 32 32 H 1.09005 * 109.48562 * 273.69070 * 4 2 1 33 33 H 1.08999 * 109.49014 * 33.75573 * 4 2 1 34 34 H 1.09000 * 109.37140 * 212.08174 * 5 4 2 35 35 H 1.09007 * 109.36826 * 331.69365 * 5 4 2 36 36 H 1.08998 * 108.94710 * 80.12244 * 6 5 4 37 37 H 1.08998 * 108.94999 * 198.75346 * 6 5 4 38 38 H 0.96992 * 120.00355 * 0.02562 * 12 10 8 39 39 H 1.08995 * 109.46192 * 35.02141 * 13 12 10 40 40 H 1.08994 * 109.49882 * 298.57051 * 14 13 12 41 41 H 1.09005 * 109.49840 * 58.66894 * 14 13 12 42 42 H 1.09004 * 109.59268 * 294.85191 * 15 14 13 43 43 H 1.09002 * 109.58752 * 174.42634 * 15 14 13 44 44 H 0.96999 * 120.00686 * 179.97438 * 20 19 17 45 45 H 1.09002 * 109.59044 * 293.81880 * 25 16 15 46 46 H 1.08997 * 109.58981 * 173.39120 * 25 16 15 47 47 H 1.08996 * 109.49342 * 301.33550 * 26 13 12 48 48 H 1.09005 * 109.49780 * 61.43211 * 26 13 12 49 49 H 1.09002 * 109.45209 * 330.68157 * 27 7 6 50 50 H 1.09007 * 109.44922 * 210.76557 * 27 7 6 51 51 H 1.08997 * 109.33270 * 304.31694 * 28 2 1 52 52 H 1.09005 * 109.32487 * 63.79400 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8726 1.0348 0.0000 4 6 2.0144 -0.6706 -1.2820 5 6 3.3836 -0.1442 -1.6351 6 6 4.4710 -1.0417 -1.0169 7 7 4.1252 -1.4719 0.3521 8 6 4.3634 -2.7500 0.7071 9 8 4.8230 -3.5290 -0.1019 10 6 4.0615 -3.2079 2.0974 11 8 3.5004 -2.4625 2.8733 12 7 4.4126 -4.4488 2.4893 13 6 4.1162 -4.8978 3.8519 14 6 5.2332 -4.4415 4.7934 15 6 4.9029 -4.8828 6.2227 16 7 4.6648 -6.3326 6.2270 17 6 5.3530 -7.1501 7.0833 18 1 5.6402 -8.1426 6.7686 19 6 5.6815 -6.7032 8.3558 20 7 5.4082 -5.4653 8.7095 21 14 6.5114 -7.8589 9.5662 22 1 6.7073 -9.1858 8.9289 23 1 7.8291 -7.2994 9.9609 24 1 5.6569 -8.0105 10.7713 25 6 3.6749 -6.8887 5.2946 26 6 4.0189 -6.4250 3.8756 27 6 3.5415 -0.5787 1.3277 28 6 1.9971 -0.6465 1.2359 29 1 -0.3633 0.5504 0.8679 30 1 -0.3634 0.4763 -0.9106 31 1 -0.3633 -1.0268 0.0428 32 1 2.0672 -1.7488 -1.1308 33 1 1.3198 -0.4502 -2.0926 34 1 3.4979 -0.1324 -2.7190 35 1 3.4909 0.8703 -1.2512 36 1 4.5997 -1.9243 -1.6434 37 1 5.4107 -0.4902 -0.9879 38 1 4.8614 -5.0444 1.8692 39 1 3.1689 -4.4684 4.1778 40 1 6.1767 -4.8903 4.4829 41 1 5.3175 -3.3553 4.7583 42 1 4.0080 -4.3646 6.5676 43 1 5.7399 -4.6479 6.8803 44 1 5.6374 -5.1531 9.5988 45 1 2.6799 -6.5342 5.5637 46 1 3.7016 -7.9774 5.3397 47 1 3.2390 -6.7505 3.1873 48 1 4.9739 -6.8551 3.5738 49 1 3.8724 0.4409 1.1301 50 1 3.8590 -0.8756 2.3273 51 1 1.5618 -0.1378 2.0960 52 1 1.6809 -1.6897 1.2390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588127905.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:28 Heat of formation + Delta-G solvation = -46.624467 kcal Electronic energy + Delta-G solvation = -30794.455617 eV Core-core repulsion = 26794.501710 eV Total energy + Delta-G solvation = -3999.953907 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.15468 -39.21505 -38.10890 -37.34568 -35.14662 -34.30218 -33.02860 -32.14516 -30.09470 -29.54498 -28.89879 -27.07873 -25.45301 -24.24534 -23.98601 -22.26415 -21.99789 -20.83108 -20.38442 -19.89660 -19.06421 -17.73817 -17.12148 -16.77896 -16.09028 -15.86391 -15.57097 -15.04680 -14.88570 -14.64224 -14.40255 -14.07812 -13.82299 -13.72039 -13.50767 -13.33078 -13.22034 -12.99580 -12.80116 -12.57222 -12.40133 -12.20467 -11.91137 -11.75801 -11.53439 -11.34213 -11.21132 -11.02210 -10.92437 -10.81812 -10.76139 -10.69644 -10.62440 -10.35381 -10.20494 -10.06457 -9.86607 -9.71984 -9.17407 -8.90246 -8.71062 -8.44399 -6.59007 -5.79926 -3.33698 1.47436 2.34287 3.24569 3.35799 3.43522 3.45200 3.52848 4.27764 4.45857 4.46474 4.52045 4.55519 4.79049 4.82875 5.05187 5.10590 5.26189 5.31789 5.38594 5.41597 5.44737 5.44846 5.47284 5.56455 5.60823 5.62578 5.64967 5.75418 5.79150 5.89585 5.93811 6.01553 6.03676 6.06848 6.18504 6.23475 6.34086 6.36038 6.42810 6.56928 6.65559 6.75389 6.81408 6.92347 6.96122 7.38345 7.44137 7.77114 7.77753 7.81076 8.12641 8.51551 9.22752 9.81217 10.40510 11.25911 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024205 B = 0.002378 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.526859 B =11773.236636 C =12074.736955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 H 0.065 0.935 4 C -0.112 4.112 5 C -0.129 4.129 6 C 0.106 3.894 7 N -0.574 5.574 8 C 0.501 3.499 9 O -0.529 6.529 10 C 0.502 3.498 11 O -0.511 6.511 12 N -0.690 5.690 13 C 0.148 3.852 14 C -0.148 4.148 15 C 0.169 3.831 16 N -0.595 5.595 17 C -0.255 4.255 18 H 0.065 0.935 19 C 0.009 3.991 20 N -0.903 5.903 21 Si 0.903 3.097 22 H -0.277 1.277 23 H -0.290 1.290 24 H -0.288 1.288 25 C 0.149 3.851 26 C -0.141 4.141 27 C 0.082 3.918 28 C -0.119 4.119 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.406 0.594 39 H 0.086 0.914 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.018 0.982 43 H 0.104 0.896 44 H 0.255 0.745 45 H 0.021 0.979 46 H 0.059 0.941 47 H 0.056 0.944 48 H 0.064 0.936 49 H 0.068 0.932 50 H 0.131 0.869 51 H 0.076 0.924 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.876 11.848 -20.206 24.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 H 0.083 0.917 4 C -0.150 4.150 5 C -0.167 4.167 6 C -0.015 4.015 7 N -0.307 5.307 8 C 0.284 3.716 9 O -0.405 6.405 10 C 0.282 3.718 11 O -0.388 6.388 12 N -0.341 5.341 13 C 0.046 3.954 14 C -0.189 4.189 15 C 0.043 3.957 16 N -0.318 5.318 17 C -0.384 4.384 18 H 0.083 0.917 19 C -0.190 4.190 20 N -0.547 5.547 21 Si 0.733 3.267 22 H -0.202 1.202 23 H -0.217 1.217 24 H -0.215 1.215 25 C 0.022 3.978 26 C -0.181 4.181 27 C -0.040 4.040 28 C -0.157 4.157 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.241 0.759 39 H 0.104 0.896 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.036 0.964 43 H 0.122 0.878 44 H 0.065 0.935 45 H 0.039 0.961 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.148 0.852 51 H 0.095 0.905 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.002 12.053 -19.898 24.026 hybrid contribution 0.571 -0.665 0.248 0.910 sum -5.431 11.388 -19.651 23.352 Atomic orbital electron populations 1.21975 0.95456 1.01830 1.01447 1.20158 0.95921 0.99946 0.95124 0.91699 1.21151 0.95888 1.00883 0.97076 1.21749 0.94828 0.99352 1.00796 1.21961 0.97363 0.99996 0.82213 1.47604 1.60128 1.09753 1.13199 1.20467 0.79291 0.82900 0.88918 1.90723 1.43938 1.53411 1.52460 1.19991 0.80619 0.83413 0.87728 1.90604 1.41417 1.51960 1.54863 1.46245 1.58177 1.13875 1.15766 1.21252 1.00070 0.95106 0.79002 1.22641 0.97261 0.99567 0.99384 1.20981 1.01117 0.83269 0.90305 1.44062 1.42656 1.03250 1.41790 1.19195 1.29702 0.97613 0.91934 0.91747 1.25332 1.00106 0.96610 0.96943 1.69886 1.50679 1.14732 1.19414 0.86207 0.78486 0.80591 0.81428 1.20227 1.21668 1.21482 1.20862 0.92264 0.97347 0.87315 1.22372 1.01546 0.93507 1.00630 1.22496 0.93285 0.93268 0.94973 1.21136 0.95517 1.01785 0.97265 0.92687 0.92971 0.92798 0.91783 0.91754 0.90522 0.91358 0.89055 0.91499 0.75853 0.89601 0.92605 0.92884 0.96374 0.87791 0.93492 0.96098 0.92219 0.92488 0.91685 0.91400 0.85216 0.90545 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.92 37.16 0.33 -0.81 16 2 C -0.09 -0.75 2.16 -93.68 -0.20 -0.95 16 3 H 0.06 0.48 7.36 -51.93 -0.38 0.10 16 4 C -0.11 -0.89 4.93 -28.02 -0.14 -1.03 16 5 C -0.13 -0.88 5.71 -27.31 -0.16 -1.04 16 6 C 0.11 0.95 6.11 -2.94 -0.02 0.93 16 7 N -0.57 -6.39 2.24 -173.04 -0.39 -6.78 16 8 C 0.50 6.88 7.69 -11.58 -0.09 6.79 16 9 O -0.53 -8.12 15.76 5.50 0.09 -8.03 16 10 C 0.50 7.48 7.70 -11.58 -0.09 7.39 16 11 O -0.51 -8.22 11.88 5.50 0.07 -8.15 16 12 N -0.69 -10.26 5.07 -54.19 -0.27 -10.54 16 13 C 0.15 2.53 2.42 -67.88 -0.16 2.37 16 14 C -0.15 -2.90 5.65 -26.61 -0.15 -3.05 16 15 C 0.17 4.04 5.27 -3.71 -0.02 4.02 16 16 N -0.59 -14.63 3.00 -172.32 -0.52 -15.14 16 17 C -0.25 -6.86 9.55 -15.06 -0.14 -7.01 16 18 H 0.06 1.70 7.83 -52.48 -0.41 1.29 16 19 C 0.01 0.24 5.32 -17.43 -0.09 0.15 16 20 N -0.90 -25.77 10.60 55.49 0.59 -25.18 16 21 Si 0.90 21.39 29.56 -169.99 -5.02 16.37 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 25 C 0.15 3.02 6.52 -3.71 -0.02 3.00 16 26 C -0.14 -2.34 5.55 -26.61 -0.15 -2.49 16 27 C 0.08 0.85 4.98 -4.09 -0.02 0.83 16 28 C -0.12 -1.18 4.33 -28.58 -0.12 -1.30 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.35 7.96 -51.93 -0.41 -0.06 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.64 7.48 -51.93 -0.39 0.25 16 33 H 0.06 0.45 7.73 -51.93 -0.40 0.05 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.42 7.32 -51.92 -0.38 0.04 16 36 H 0.09 0.92 6.94 -51.93 -0.36 0.56 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.41 5.55 8.09 -40.82 -0.33 5.22 16 39 H 0.09 1.59 7.58 -51.93 -0.39 1.19 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.10 2.80 5.90 -51.93 -0.31 2.50 16 44 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 47 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 49 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 50 H 0.13 1.64 4.89 -53.56 -0.26 1.38 16 51 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 52 H 0.06 0.77 7.83 -51.93 -0.41 0.36 16 LS Contribution 392.96 15.07 5.92 5.92 Total: -1.00 -29.60 392.96 -9.84 -39.44 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -9.05 Total: 4.29 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: -1.25 Total: 7.81 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -0.59 Total: -57.64 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: 0.15 Total: -16.18 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.60 -9.84 -39.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588127905.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.188 kcal (2) G-P(sol) polarization free energy of solvation -29.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds