Wall clock time and date at job start Tue Mar 31 2020 22:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 108.31711 * 2 1 4 4 C 1.52573 * 108.51323 * 242.38784 * 2 1 3 5 5 C 1.50870 * 109.35827 * 153.72913 * 4 2 1 6 6 C 1.53947 * 110.09994 * 91.88871 * 5 4 2 7 7 N 1.47607 * 112.13795 * 319.43398 * 6 5 4 8 8 C 1.34774 * 118.64059 * 137.86445 * 7 6 5 9 9 O 1.21349 * 120.00448 * 358.24955 * 8 7 6 10 10 C 1.49455 * 119.99582 * 178.24474 * 8 7 6 11 11 O 1.21349 * 120.00144 * 6.11296 * 10 8 7 12 12 N 1.34780 * 119.99630 * 186.10987 * 10 8 7 13 13 C 1.46503 * 119.99621 * 180.02562 * 12 10 8 14 14 C 1.53045 * 109.45746 * 275.06439 * 13 12 10 15 15 C 1.53189 * 109.31152 * 178.61303 * 14 13 12 16 16 N 1.46928 * 108.77595 * 54.63896 * 15 14 13 17 17 C 1.36939 * 120.63228 * 126.36614 * 16 15 14 18 18 H 1.08004 * 120.00048 * 215.31281 * 17 16 15 19 19 C 1.38811 * 119.99762 * 35.31016 * 17 16 15 20 20 N 1.31613 * 120.00456 * 355.62363 * 19 17 16 21 21 Si 1.86800 * 119.99730 * 175.62274 * 19 17 16 22 22 H 1.48502 * 109.47141 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47474 * 120.00029 * 21 19 17 24 24 H 1.48504 * 109.47207 * 240.00230 * 21 19 17 25 25 C 1.46920 * 118.73836 * 306.39238 * 16 15 14 26 26 C 1.53044 * 109.45961 * 155.00214 * 13 12 10 27 27 C 1.44575 * 122.71149 * 317.86930 * 7 6 5 28 28 C 1.47088 * 108.51532 * 117.61523 * 2 1 3 29 29 H 1.09004 * 109.46794 * 302.38126 * 1 2 3 30 30 H 1.09001 * 109.47303 * 62.38584 * 1 2 3 31 31 H 1.09002 * 109.47169 * 182.38724 * 1 2 3 32 32 H 1.09005 * 109.48562 * 273.69070 * 4 2 1 33 33 H 1.08999 * 109.49014 * 33.75573 * 4 2 1 34 34 H 1.09000 * 109.37140 * 212.08174 * 5 4 2 35 35 H 1.09007 * 109.36826 * 331.69365 * 5 4 2 36 36 H 1.08998 * 108.94710 * 80.12244 * 6 5 4 37 37 H 1.08998 * 108.94999 * 198.75346 * 6 5 4 38 38 H 0.96992 * 120.00355 * 0.02562 * 12 10 8 39 39 H 1.08995 * 109.46192 * 35.02141 * 13 12 10 40 40 H 1.08994 * 109.49882 * 298.57051 * 14 13 12 41 41 H 1.09005 * 109.49840 * 58.66894 * 14 13 12 42 42 H 1.09004 * 109.59268 * 294.85191 * 15 14 13 43 43 H 1.09002 * 109.58752 * 174.42634 * 15 14 13 44 44 H 0.96999 * 120.00686 * 179.97438 * 20 19 17 45 45 H 1.09002 * 109.59044 * 293.81880 * 25 16 15 46 46 H 1.08997 * 109.58981 * 173.39120 * 25 16 15 47 47 H 1.08996 * 109.49342 * 301.33550 * 26 13 12 48 48 H 1.09005 * 109.49780 * 61.43211 * 26 13 12 49 49 H 1.09002 * 109.45209 * 330.68157 * 27 7 6 50 50 H 1.09007 * 109.44922 * 210.76557 * 27 7 6 51 51 H 1.08997 * 109.33270 * 304.31694 * 28 2 1 52 52 H 1.09005 * 109.32487 * 63.79400 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8726 1.0348 0.0000 4 6 2.0144 -0.6706 -1.2820 5 6 3.3836 -0.1442 -1.6351 6 6 4.4710 -1.0417 -1.0169 7 7 4.1252 -1.4719 0.3521 8 6 4.3634 -2.7500 0.7071 9 8 4.8230 -3.5290 -0.1019 10 6 4.0615 -3.2079 2.0974 11 8 3.5004 -2.4625 2.8733 12 7 4.4126 -4.4488 2.4893 13 6 4.1162 -4.8978 3.8519 14 6 5.2332 -4.4415 4.7934 15 6 4.9029 -4.8828 6.2227 16 7 4.6648 -6.3326 6.2270 17 6 5.3530 -7.1501 7.0833 18 1 5.6402 -8.1426 6.7686 19 6 5.6815 -6.7032 8.3558 20 7 5.4082 -5.4653 8.7095 21 14 6.5114 -7.8589 9.5662 22 1 6.7073 -9.1858 8.9289 23 1 7.8291 -7.2994 9.9609 24 1 5.6569 -8.0105 10.7713 25 6 3.6749 -6.8887 5.2946 26 6 4.0189 -6.4250 3.8756 27 6 3.5415 -0.5787 1.3277 28 6 1.9971 -0.6465 1.2359 29 1 -0.3633 0.5504 0.8679 30 1 -0.3634 0.4763 -0.9106 31 1 -0.3633 -1.0268 0.0428 32 1 2.0672 -1.7488 -1.1308 33 1 1.3198 -0.4502 -2.0926 34 1 3.4979 -0.1324 -2.7190 35 1 3.4909 0.8703 -1.2512 36 1 4.5997 -1.9243 -1.6434 37 1 5.4107 -0.4902 -0.9879 38 1 4.8614 -5.0444 1.8692 39 1 3.1689 -4.4684 4.1778 40 1 6.1767 -4.8903 4.4829 41 1 5.3175 -3.3553 4.7583 42 1 4.0080 -4.3646 6.5676 43 1 5.7399 -4.6479 6.8803 44 1 5.6374 -5.1531 9.5988 45 1 2.6799 -6.5342 5.5637 46 1 3.7016 -7.9774 5.3397 47 1 3.2390 -6.7505 3.1873 48 1 4.9739 -6.8551 3.5738 49 1 3.8724 0.4409 1.1301 50 1 3.8590 -0.8756 2.3273 51 1 1.5618 -0.1378 2.0960 52 1 1.6809 -1.6897 1.2390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588127905.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:25 Heat of formation + Delta-G solvation = -63.735219 kcal Electronic energy + Delta-G solvation = -30795.197595 eV Core-core repulsion = 26794.501710 eV Total energy + Delta-G solvation = -4000.695885 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.21454 -40.35444 -39.08338 -38.85564 -36.36750 -35.50986 -33.96362 -33.69029 -31.78974 -31.26596 -29.67851 -28.01207 -27.02508 -25.40142 -24.89951 -23.89701 -23.45083 -21.96366 -21.27481 -21.03384 -20.36461 -18.98485 -18.53186 -18.16224 -17.17361 -17.02222 -16.84669 -16.47218 -15.96619 -15.70689 -15.40998 -15.34157 -15.29707 -14.90650 -14.77851 -14.64814 -14.42118 -14.09721 -14.03468 -13.92128 -13.50406 -13.25730 -12.95051 -12.82999 -12.79350 -12.66489 -12.60250 -12.47875 -12.31944 -12.08195 -11.98499 -11.87789 -11.86732 -11.62038 -11.42971 -11.41545 -11.33256 -11.29181 -10.56454 -10.28870 -10.16955 -9.71973 -8.58142 -7.85863 -5.42801 0.33773 1.28871 1.47421 1.49190 1.59269 2.10094 2.45791 2.50368 3.25693 3.31569 3.67218 3.70058 3.83734 3.86595 3.92207 4.04647 4.07198 4.14913 4.29619 4.34211 4.44198 4.47661 4.63680 4.67277 4.68034 4.73716 4.76609 4.80269 4.83914 4.92751 4.97439 5.00532 5.04714 5.05427 5.07928 5.12926 5.23513 5.27308 5.31923 5.32722 5.36830 5.41350 5.52074 5.55400 5.57476 5.65427 5.80660 5.93852 6.26062 6.46688 6.70545 6.95503 7.17845 7.84518 8.38924 9.18196 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024205 B = 0.002378 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.526859 B =11773.236636 C =12074.736955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 H 0.081 0.919 4 C -0.111 4.111 5 C -0.122 4.122 6 C 0.101 3.899 7 N -0.563 5.563 8 C 0.501 3.499 9 O -0.549 6.549 10 C 0.500 3.500 11 O -0.525 6.525 12 N -0.684 5.684 13 C 0.162 3.838 14 C -0.132 4.132 15 C 0.179 3.821 16 N -0.613 5.613 17 C -0.263 4.263 18 H 0.069 0.931 19 C -0.047 4.047 20 N -0.934 5.934 21 Si 0.969 3.031 22 H -0.264 1.264 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.145 3.855 26 C -0.126 4.126 27 C 0.082 3.918 28 C -0.112 4.112 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.415 0.585 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.052 0.948 42 H -0.007 1.007 43 H 0.069 0.931 44 H 0.250 0.750 45 H 0.018 0.982 46 H 0.067 0.933 47 H 0.089 0.911 48 H 0.070 0.930 49 H 0.095 0.905 50 H 0.108 0.892 51 H 0.076 0.924 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.961 12.424 -22.561 26.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 H 0.100 0.900 4 C -0.149 4.149 5 C -0.160 4.160 6 C -0.019 4.019 7 N -0.295 5.295 8 C 0.283 3.717 9 O -0.427 6.427 10 C 0.281 3.719 11 O -0.403 6.403 12 N -0.336 5.336 13 C 0.058 3.942 14 C -0.173 4.173 15 C 0.052 3.948 16 N -0.337 5.337 17 C -0.393 4.393 18 H 0.087 0.913 19 C -0.242 4.242 20 N -0.580 5.580 21 Si 0.797 3.203 22 H -0.189 1.189 23 H -0.219 1.219 24 H -0.218 1.218 25 C 0.019 3.981 26 C -0.166 4.166 27 C -0.041 4.041 28 C -0.150 4.150 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.252 0.748 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.011 0.989 43 H 0.088 0.912 44 H 0.060 0.940 45 H 0.036 0.964 46 H 0.085 0.915 47 H 0.108 0.892 48 H 0.088 0.912 49 H 0.113 0.887 50 H 0.125 0.875 51 H 0.094 0.906 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.099 12.639 -22.302 26.350 hybrid contribution 0.548 -0.780 0.954 1.349 sum -5.551 11.859 -21.348 25.044 Atomic orbital electron populations 1.21959 0.95175 1.01225 1.02205 1.20148 0.96172 1.00507 0.94198 0.90038 1.21142 0.97058 0.99281 0.97370 1.21749 0.93057 0.99281 1.01884 1.22200 0.99047 1.00153 0.80530 1.47725 1.58713 1.08804 1.14274 1.20188 0.79689 0.83775 0.87999 1.90714 1.45354 1.54081 1.52588 1.20322 0.80132 0.83099 0.88359 1.90626 1.41802 1.52294 1.55550 1.46007 1.58512 1.14244 1.14835 1.20883 0.98185 0.95512 0.79646 1.22372 0.98146 0.99403 0.97352 1.20653 0.98536 0.83382 0.92195 1.44298 1.43717 1.03169 1.42493 1.19529 1.29511 0.97892 0.92414 0.91310 1.26086 1.01499 0.97924 0.98704 1.70083 1.52259 1.16277 1.19397 0.85181 0.77072 0.79137 0.78915 1.18854 1.21863 1.21848 1.21022 0.91081 0.97745 0.88295 1.22191 1.02921 0.92727 0.98737 1.22474 0.93598 0.94243 0.93738 1.21073 0.95067 1.00380 0.98514 0.92604 0.91611 0.94040 0.94269 0.90394 0.88560 0.89835 0.90238 0.89904 0.74815 0.90915 0.92693 0.92952 0.98886 0.91241 0.94026 0.96376 0.91478 0.89243 0.91162 0.88719 0.87481 0.90568 0.94419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.92 71.98 0.64 -1.38 16 2 C -0.09 -1.29 2.16 -12.77 -0.03 -1.32 16 3 H 0.08 0.92 7.36 -2.38 -0.02 0.91 16 4 C -0.11 -1.50 4.93 29.76 0.15 -1.36 16 5 C -0.12 -1.27 5.71 30.22 0.17 -1.10 16 6 C 0.10 1.58 6.11 86.49 0.53 2.11 16 7 N -0.56 -11.85 2.24 -819.74 -1.84 -13.69 16 8 C 0.50 13.45 7.69 87.27 0.67 14.12 16 9 O -0.55 -16.45 15.76 -3.24 -0.05 -16.50 16 10 C 0.50 14.76 7.70 87.27 0.67 15.44 16 11 O -0.52 -17.05 11.88 -3.24 -0.04 -17.09 16 12 N -0.68 -19.83 5.07 -443.72 -2.25 -22.08 16 13 C 0.16 5.45 2.42 45.02 0.11 5.55 16 14 C -0.13 -5.26 5.65 30.67 0.17 -5.08 16 15 C 0.18 8.85 5.27 86.36 0.45 9.31 16 16 N -0.61 -30.59 3.00 -699.10 -2.10 -32.69 16 17 C -0.26 -14.30 9.55 84.03 0.80 -13.50 16 18 H 0.07 3.61 7.83 -2.91 -0.02 3.59 16 19 C -0.05 -2.60 5.32 84.86 0.45 -2.15 16 20 N -0.93 -55.13 10.60 21.65 0.23 -54.90 16 21 Si 0.97 44.55 29.56 68.60 2.03 46.58 16 22 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 24 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 25 C 0.14 5.77 6.52 86.36 0.56 6.33 16 26 C -0.13 -4.00 5.55 30.67 0.17 -3.83 16 27 C 0.08 1.59 4.98 87.38 0.43 2.03 16 28 C -0.11 -2.12 4.33 29.39 0.13 -2.00 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.72 7.96 -2.39 -0.02 0.70 16 31 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.04 0.74 7.48 -2.38 -0.02 0.72 16 33 H 0.08 0.86 7.73 -2.39 -0.02 0.84 16 34 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.08 0.67 7.32 -2.38 -0.02 0.66 16 36 H 0.08 1.48 6.94 -2.39 -0.02 1.46 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.41 10.77 8.09 -92.71 -0.75 10.02 16 39 H 0.07 2.69 7.58 -2.39 -0.02 2.67 16 40 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 42 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 43 H 0.07 3.93 5.90 -2.39 -0.01 3.92 16 44 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 45 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.07 2.55 7.93 -2.39 -0.02 2.53 16 47 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 48 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 49 H 0.09 1.36 8.07 -2.39 -0.02 1.35 16 50 H 0.11 2.68 4.89 -28.31 -0.14 2.54 16 51 H 0.08 1.43 8.11 -2.39 -0.02 1.41 16 52 H 0.04 0.91 7.83 -2.38 -0.02 0.89 16 Total: -1.00 -65.68 392.96 2.11 -63.57 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 0.03 Total: 23.61 kcal Atomic # 6 Polarization: 17.09 SS G_CDS: 6.09 Total: 23.18 kcal Atomic # 7 Polarization: -117.40 SS G_CDS: -5.95 Total: -123.35 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -0.09 Total: -33.58 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -65.68 2.11 -63.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588127905.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.161 kcal (2) G-P(sol) polarization free energy of solvation -65.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds