Wall clock time and date at job start Tue Mar 31 2020 22:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.53010 * 2 1 4 4 C 1.53112 * 109.50416 * 239.90315 * 2 1 3 5 5 C 1.53117 * 109.16045 * 182.40125 * 4 2 1 6 6 C 1.53037 * 109.27645 * 57.65872 * 5 4 2 7 7 N 1.46848 * 109.51995 * 300.81756 * 6 5 4 8 8 C 1.46905 * 110.99817 * 185.84222 * 7 6 5 9 9 C 1.50697 * 109.47101 * 300.26998 * 8 7 6 10 10 O 1.21279 * 120.00216 * 354.80737 * 9 8 7 11 11 N 1.34773 * 119.99947 * 174.80477 * 9 8 7 12 12 C 1.46497 * 120.00139 * 180.02562 * 11 9 8 13 13 C 1.50706 * 109.47005 * 270.00096 * 12 11 9 14 14 H 1.08004 * 119.99750 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00124 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99927 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00133 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47153 * 89.99872 * 17 15 13 19 19 H 1.48503 * 109.47351 * 209.99936 * 17 15 13 20 20 H 1.48496 * 109.47216 * 329.99968 * 17 15 13 21 21 C 1.46507 * 120.00072 * 359.97438 * 11 9 8 22 22 C 1.52997 * 109.47162 * 270.00209 * 21 11 9 23 23 C 1.47200 * 109.47110 * 180.02562 * 22 21 11 24 24 N 9.04662 * 135.98004 * 109.09452 * 2 1 3 25 25 C 1.46842 * 111.20120 * 61.74331 * 7 6 5 26 26 H 1.09006 * 109.45816 * 58.25992 * 25 7 6 27 27 C 1.52996 * 109.46808 * 178.23882 * 25 7 6 28 28 C 1.53003 * 109.46844 * 58.42381 * 27 25 7 29 29 O 1.42902 * 109.47067 * 175.96809 * 28 27 25 30 30 H 1.09004 * 109.47199 * 299.90067 * 1 2 3 31 31 H 1.08995 * 109.47657 * 59.90090 * 1 2 3 32 32 H 1.09003 * 109.47092 * 179.90616 * 1 2 3 33 33 H 1.09005 * 109.52615 * 302.30966 * 4 2 1 34 34 H 1.09002 * 109.52205 * 62.49449 * 4 2 1 35 35 H 1.09004 * 109.49924 * 177.59449 * 5 4 2 36 36 H 1.08992 * 109.50492 * 297.67173 * 5 4 2 37 37 H 1.09001 * 109.46034 * 180.80242 * 6 5 4 38 38 H 1.08997 * 109.46701 * 60.83619 * 6 5 4 39 39 H 1.08996 * 109.47114 * 180.26719 * 8 7 6 40 40 H 1.09001 * 109.46886 * 60.27242 * 8 7 6 41 41 H 1.09003 * 109.47678 * 149.99878 * 12 11 9 42 42 H 1.08997 * 109.47166 * 29.99787 * 12 11 9 43 43 H 0.97006 * 120.00227 * 179.97438 * 16 15 13 44 44 H 1.09002 * 109.46464 * 30.00369 * 21 11 9 45 45 H 1.09002 * 109.46901 * 150.00053 * 21 11 9 46 46 H 1.09007 * 109.47074 * 300.00007 * 22 21 11 47 47 H 1.08995 * 109.47129 * 59.99741 * 22 21 11 48 48 H 1.08987 * 109.47659 * 178.42423 * 27 25 7 49 49 H 1.09001 * 109.47194 * 298.42859 * 27 25 7 50 50 H 1.09003 * 109.47376 * 295.96632 * 28 27 25 51 51 H 1.08997 * 109.47031 * 55.96617 * 28 27 25 52 52 H 0.96705 * 113.99674 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0412 -0.7237 -1.2487 5 6 3.5712 -0.7718 -1.2107 6 6 4.0229 -1.4729 0.0724 7 7 3.5092 -0.7420 1.2379 8 6 4.0373 -1.3058 2.4874 9 6 3.6282 -2.7520 2.5984 10 8 2.8850 -3.2371 1.7718 11 7 4.0883 -3.5063 3.6161 12 6 3.6912 -4.9122 3.7236 13 6 2.4333 -5.0173 4.5471 14 1 1.9758 -4.1259 4.9503 15 6 1.8672 -6.2514 4.7865 16 7 2.4246 -7.3370 4.2959 17 14 0.3085 -6.3818 5.8077 18 1 -0.8761 -6.2876 4.9171 19 1 0.2904 -7.6850 6.5194 20 1 0.2720 -5.2762 6.7985 21 6 4.9866 -2.9204 4.6142 22 6 6.4374 -3.1002 4.1627 23 6 7.3399 -2.5122 5.1659 24 7 8.0354 -2.0565 5.9407 25 6 2.0410 -0.7233 1.2481 26 1 1.6648 -1.7464 1.2542 27 6 1.5490 0.0081 2.4986 28 6 2.1095 1.4317 2.5103 29 8 1.5755 2.1447 3.6277 30 1 -0.3634 0.5123 0.8909 31 1 -0.3634 0.5153 -0.8890 32 1 -0.3633 -1.0277 -0.0017 33 1 1.6453 -1.7391 -1.2690 34 1 1.7156 -0.1870 -2.1397 35 1 3.9395 -1.3233 -2.0758 36 1 3.9677 0.2432 -1.2305 37 1 5.1121 -1.4961 0.1094 38 1 3.6376 -2.4924 0.0842 39 1 3.6373 -0.7490 3.3348 40 1 5.1250 -1.2348 2.4869 41 1 4.4884 -5.4794 4.2041 42 1 3.5081 -5.3153 2.7276 43 1 2.0265 -8.2053 4.4647 44 1 4.7681 -1.8578 4.7204 45 1 4.8398 -3.4191 5.5723 46 1 6.6558 -4.1629 4.0565 47 1 6.5841 -2.6016 3.2046 48 1 0.4598 0.0465 2.4922 49 1 1.8886 -0.5233 3.3876 50 1 3.1960 1.3939 2.5890 51 1 1.8296 1.9400 1.5876 52 1 1.8883 3.0571 3.6979 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595704790.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:50 Heat of formation + Delta-G solvation = -60.638821 kcal Electronic energy + Delta-G solvation = -31576.249492 eV Core-core repulsion = 27575.687878 eV Total energy + Delta-G solvation = -4000.561615 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -40.51291 -38.56998 -36.90628 -36.65088 -35.33064 -34.06867 -33.25383 -32.86567 -30.87750 -29.52495 -28.20644 -26.41248 -26.24984 -24.05257 -23.92780 -22.89395 -21.52572 -20.93637 -19.23491 -18.46286 -17.63313 -17.38102 -16.64436 -16.47095 -16.08360 -15.76334 -15.11353 -14.91517 -14.74291 -14.57904 -14.40967 -14.12996 -13.90928 -13.70277 -13.48227 -13.31152 -12.77834 -12.67066 -12.54247 -12.45098 -12.36886 -12.06414 -11.94546 -11.76859 -11.71867 -11.54792 -11.36294 -11.29089 -11.19782 -11.01098 -10.85992 -10.66862 -10.62038 -10.41703 -10.22685 -10.20132 -10.03252 -9.74450 -9.73105 -9.61444 -8.50064 -7.89224 -7.77720 -6.11850 -4.16457 2.70828 2.79722 3.19204 3.27554 3.34160 3.37012 3.63061 3.96757 4.18848 4.27347 4.39575 4.77843 4.83873 4.90581 4.93741 5.08482 5.10664 5.17057 5.23465 5.26329 5.29780 5.37315 5.43767 5.48926 5.55032 5.58280 5.63241 5.66875 5.73968 5.79729 5.86282 5.94268 5.99367 6.04386 6.06974 6.09492 6.14915 6.21470 6.29566 6.35956 6.40865 6.60276 6.86126 7.13631 7.21079 7.32129 7.39310 7.56222 7.63680 7.83979 8.14086 8.21371 8.78675 8.93320 9.49384 10.96188 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007824 B = 0.004445 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3577.699786 B = 6297.357262 C = 7697.921377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.082 4.082 3 H 0.073 0.927 4 C -0.116 4.116 5 C -0.111 4.111 6 C 0.037 3.963 7 N -0.510 5.510 8 C 0.022 3.978 9 C 0.478 3.522 10 O -0.530 6.530 11 N -0.594 5.594 12 C 0.244 3.756 13 C -0.527 4.527 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.894 5.894 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.117 3.883 22 C -0.049 4.049 23 C 0.217 3.783 24 N -0.444 5.444 25 C 0.076 3.924 26 H 0.089 0.911 27 C -0.117 4.117 28 C 0.081 3.919 29 O -0.581 6.581 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.033 0.967 42 H 0.045 0.955 43 H 0.263 0.737 44 H 0.076 0.924 45 H 0.094 0.906 46 H 0.117 0.883 47 H 0.106 0.894 48 H 0.075 0.925 49 H 0.068 0.932 50 H 0.054 0.946 51 H 0.045 0.955 52 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.324 15.861 -8.572 18.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.100 4.100 3 H 0.091 0.909 4 C -0.153 4.153 5 C -0.149 4.149 6 C -0.091 4.091 7 N -0.233 5.233 8 C -0.110 4.110 9 C 0.264 3.736 10 O -0.408 6.408 11 N -0.326 5.326 12 C 0.125 3.875 13 C -0.566 4.566 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.532 5.532 17 Si 0.723 3.277 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.010 4.010 22 C -0.091 4.091 23 C -0.101 4.101 24 N -0.122 5.122 25 C -0.032 4.032 26 H 0.107 0.893 27 C -0.155 4.155 28 C 0.003 3.997 29 O -0.386 6.386 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.122 0.878 40 H 0.114 0.886 41 H 0.051 0.949 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.094 0.906 45 H 0.113 0.887 46 H 0.135 0.865 47 H 0.124 0.876 48 H 0.093 0.907 49 H 0.087 0.913 50 H 0.073 0.927 51 H 0.063 0.937 52 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 3.803 15.964 -7.812 18.175 hybrid contribution -1.006 -0.752 0.351 1.304 sum 2.797 15.212 -7.461 17.172 Atomic orbital electron populations 1.21891 0.95206 1.02211 1.01467 1.21180 0.95079 0.99602 0.94187 0.90904 1.21630 0.95704 1.00870 0.97125 1.21517 0.95780 1.00769 0.96842 1.22323 0.99027 0.98265 0.89481 1.62439 1.08453 1.51311 1.01127 1.22495 1.01523 0.91844 0.95090 1.21665 0.81292 0.88942 0.81716 1.90587 1.35793 1.73761 1.40660 1.48373 1.45412 1.14264 1.24566 1.19330 0.95337 0.74196 0.98618 1.21390 1.09814 0.92868 1.32516 0.92456 1.24904 0.97419 0.95615 0.95967 1.69919 1.40098 0.98170 1.45062 0.86541 0.83537 0.77395 0.80236 1.20570 1.21153 1.19872 1.21310 0.85992 0.99585 0.94102 1.19883 0.92294 1.02856 0.94059 1.29104 0.93778 0.93173 0.94096 1.81233 1.10496 1.09972 1.10454 1.21893 0.87303 1.00557 0.93490 0.89305 1.21663 1.01475 0.94188 0.98171 1.22237 0.97482 0.92428 0.87521 1.86493 1.73201 1.28865 1.50030 0.92330 0.92890 0.92407 0.91780 0.92375 0.91926 0.91879 0.91659 0.90988 0.87798 0.88605 0.94896 0.93705 0.92687 0.90609 0.88747 0.86549 0.87623 0.90677 0.91341 0.92732 0.93733 0.78023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.87 37.16 0.33 -1.30 16 2 C -0.08 -0.93 2.11 -90.54 -0.19 -1.12 16 3 H 0.07 0.79 6.35 -51.93 -0.33 0.46 16 4 C -0.12 -1.29 5.29 -26.61 -0.14 -1.43 16 5 C -0.11 -1.19 6.09 -26.65 -0.16 -1.36 16 6 C 0.04 0.46 5.00 -3.83 -0.02 0.44 16 7 N -0.51 -6.39 3.96 -228.13 -0.90 -7.30 16 8 C 0.02 0.28 3.69 -4.97 -0.02 0.26 16 9 C 0.48 8.19 7.07 -10.99 -0.08 8.12 16 10 O -0.53 -11.16 11.22 5.56 0.06 -11.09 16 11 N -0.59 -10.41 2.46 -175.06 -0.43 -10.84 16 12 C 0.24 5.65 5.16 -5.19 -0.03 5.62 16 13 C -0.53 -13.88 9.39 -34.44 -0.32 -14.21 16 14 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -25.33 13.29 55.43 0.74 -24.59 16 17 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 C 0.12 1.51 5.09 -4.04 -0.02 1.49 16 22 C -0.05 -0.50 5.98 -29.52 -0.18 -0.68 16 23 C 0.22 2.57 15.44 -20.74 -0.32 2.25 16 24 N -0.44 -6.47 18.54 42.17 0.78 -5.68 16 25 C 0.08 1.02 1.26 -67.73 -0.09 0.93 16 26 H 0.09 1.56 5.69 -51.93 -0.30 1.26 16 27 C -0.12 -1.56 4.51 -26.73 -0.12 -1.68 16 28 C 0.08 0.90 6.50 37.16 0.24 1.14 16 29 O -0.58 -6.71 13.66 -35.23 -0.48 -7.19 16 30 H 0.06 0.63 6.42 -51.93 -0.33 0.30 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 38 H 0.07 1.15 5.67 -51.93 -0.29 0.86 16 39 H 0.10 1.28 5.19 -51.93 -0.27 1.01 16 40 H 0.10 0.97 6.91 -51.93 -0.36 0.61 16 41 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 42 H 0.04 1.19 7.42 -51.93 -0.39 0.80 16 43 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.08 0.83 6.58 -51.93 -0.34 0.49 16 45 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 46 H 0.12 1.18 8.14 -51.92 -0.42 0.75 16 47 H 0.11 0.85 7.13 -51.93 -0.37 0.48 16 48 H 0.07 1.03 6.37 -51.94 -0.33 0.70 16 49 H 0.07 1.03 6.32 -51.93 -0.33 0.70 16 50 H 0.05 0.59 7.24 -51.93 -0.38 0.21 16 51 H 0.04 0.46 6.25 -51.93 -0.32 0.13 16 52 H 0.37 2.55 9.12 45.56 0.42 2.96 16 LS Contribution 400.93 15.07 6.04 6.04 Total: -1.00 -32.32 400.93 -8.11 -40.43 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -7.69 Total: 3.92 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -1.21 Total: 0.10 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 0.18 Total: -48.41 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.42 Total: -18.29 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.32 -8.11 -40.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595704790.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.212 kcal (2) G-P(sol) polarization free energy of solvation -32.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds