Wall clock time and date at job start Tue Mar 31 2020 22:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.53010 * 2 1 4 4 C 1.53112 * 109.50416 * 239.90315 * 2 1 3 5 5 C 1.53117 * 109.16045 * 182.40125 * 4 2 1 6 6 C 1.53037 * 109.27645 * 57.65872 * 5 4 2 7 7 N 1.46848 * 109.51995 * 300.81756 * 6 5 4 8 8 C 1.46905 * 110.99817 * 185.84222 * 7 6 5 9 9 C 1.50697 * 109.47101 * 300.26998 * 8 7 6 10 10 O 1.21279 * 120.00216 * 354.80737 * 9 8 7 11 11 N 1.34773 * 119.99947 * 174.80477 * 9 8 7 12 12 C 1.46497 * 120.00139 * 180.02562 * 11 9 8 13 13 C 1.50706 * 109.47005 * 270.00096 * 12 11 9 14 14 H 1.08004 * 119.99750 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00124 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99927 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00133 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47153 * 89.99872 * 17 15 13 19 19 H 1.48503 * 109.47351 * 209.99936 * 17 15 13 20 20 H 1.48496 * 109.47216 * 329.99968 * 17 15 13 21 21 C 1.46507 * 120.00072 * 359.97438 * 11 9 8 22 22 C 1.52997 * 109.47162 * 270.00209 * 21 11 9 23 23 C 1.47200 * 109.47110 * 180.02562 * 22 21 11 24 24 N 9.04662 * 135.98004 * 109.09452 * 2 1 3 25 25 C 1.46842 * 111.20120 * 61.74331 * 7 6 5 26 26 H 1.09006 * 109.45816 * 58.25992 * 25 7 6 27 27 C 1.52996 * 109.46808 * 178.23882 * 25 7 6 28 28 C 1.53003 * 109.46844 * 58.42381 * 27 25 7 29 29 O 1.42902 * 109.47067 * 175.96809 * 28 27 25 30 30 H 1.09004 * 109.47199 * 299.90067 * 1 2 3 31 31 H 1.08995 * 109.47657 * 59.90090 * 1 2 3 32 32 H 1.09003 * 109.47092 * 179.90616 * 1 2 3 33 33 H 1.09005 * 109.52615 * 302.30966 * 4 2 1 34 34 H 1.09002 * 109.52205 * 62.49449 * 4 2 1 35 35 H 1.09004 * 109.49924 * 177.59449 * 5 4 2 36 36 H 1.08992 * 109.50492 * 297.67173 * 5 4 2 37 37 H 1.09001 * 109.46034 * 180.80242 * 6 5 4 38 38 H 1.08997 * 109.46701 * 60.83619 * 6 5 4 39 39 H 1.08996 * 109.47114 * 180.26719 * 8 7 6 40 40 H 1.09001 * 109.46886 * 60.27242 * 8 7 6 41 41 H 1.09003 * 109.47678 * 149.99878 * 12 11 9 42 42 H 1.08997 * 109.47166 * 29.99787 * 12 11 9 43 43 H 0.97006 * 120.00227 * 179.97438 * 16 15 13 44 44 H 1.09002 * 109.46464 * 30.00369 * 21 11 9 45 45 H 1.09002 * 109.46901 * 150.00053 * 21 11 9 46 46 H 1.09007 * 109.47074 * 300.00007 * 22 21 11 47 47 H 1.08995 * 109.47129 * 59.99741 * 22 21 11 48 48 H 1.08987 * 109.47659 * 178.42423 * 27 25 7 49 49 H 1.09001 * 109.47194 * 298.42859 * 27 25 7 50 50 H 1.09003 * 109.47376 * 295.96632 * 28 27 25 51 51 H 1.08997 * 109.47031 * 55.96617 * 28 27 25 52 52 H 0.96705 * 113.99674 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0412 -0.7237 -1.2487 5 6 3.5712 -0.7718 -1.2107 6 6 4.0229 -1.4729 0.0724 7 7 3.5092 -0.7420 1.2379 8 6 4.0373 -1.3058 2.4874 9 6 3.6282 -2.7520 2.5984 10 8 2.8850 -3.2371 1.7718 11 7 4.0883 -3.5063 3.6161 12 6 3.6912 -4.9122 3.7236 13 6 2.4333 -5.0173 4.5471 14 1 1.9758 -4.1259 4.9503 15 6 1.8672 -6.2514 4.7865 16 7 2.4246 -7.3370 4.2959 17 14 0.3085 -6.3818 5.8077 18 1 -0.8761 -6.2876 4.9171 19 1 0.2904 -7.6850 6.5194 20 1 0.2720 -5.2762 6.7985 21 6 4.9866 -2.9204 4.6142 22 6 6.4374 -3.1002 4.1627 23 6 7.3399 -2.5122 5.1659 24 7 8.0354 -2.0565 5.9407 25 6 2.0410 -0.7233 1.2481 26 1 1.6648 -1.7464 1.2542 27 6 1.5490 0.0081 2.4986 28 6 2.1095 1.4317 2.5103 29 8 1.5755 2.1447 3.6277 30 1 -0.3634 0.5123 0.8909 31 1 -0.3634 0.5153 -0.8890 32 1 -0.3633 -1.0277 -0.0017 33 1 1.6453 -1.7391 -1.2690 34 1 1.7156 -0.1870 -2.1397 35 1 3.9395 -1.3233 -2.0758 36 1 3.9677 0.2432 -1.2305 37 1 5.1121 -1.4961 0.1094 38 1 3.6376 -2.4924 0.0842 39 1 3.6373 -0.7490 3.3348 40 1 5.1250 -1.2348 2.4869 41 1 4.4884 -5.4794 4.2041 42 1 3.5081 -5.3153 2.7276 43 1 2.0265 -8.2053 4.4647 44 1 4.7681 -1.8578 4.7204 45 1 4.8398 -3.4191 5.5723 46 1 6.6558 -4.1629 4.0565 47 1 6.5841 -2.6016 3.2046 48 1 0.4598 0.0465 2.4922 49 1 1.8886 -0.5233 3.3876 50 1 3.1960 1.3939 2.5890 51 1 1.8296 1.9400 1.5876 52 1 1.8883 3.0571 3.6979 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595704790.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:49 Heat of formation + Delta-G solvation = -83.347688 kcal Electronic energy + Delta-G solvation = -31577.234223 eV Core-core repulsion = 27575.687878 eV Total energy + Delta-G solvation = -4001.546345 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.68367 -39.77402 -37.97913 -37.54830 -36.67310 -35.19851 -34.75549 -34.19595 -32.15632 -30.58884 -29.62716 -27.84626 -27.19706 -25.35266 -25.05144 -24.30856 -22.65569 -21.88518 -20.35344 -19.71559 -18.81595 -18.34770 -18.24193 -17.88557 -17.11738 -17.09975 -16.42906 -16.11709 -15.86061 -15.77029 -15.60257 -15.27340 -15.02500 -14.69809 -14.59694 -14.36682 -14.28855 -13.82730 -13.68330 -13.53998 -13.47624 -13.26884 -13.22338 -13.03714 -12.86505 -12.73303 -12.68643 -12.56499 -12.54596 -12.25445 -12.21610 -12.13920 -11.84178 -11.71825 -11.53703 -11.36372 -11.13991 -11.08850 -10.89690 -10.61599 -10.58309 -9.43908 -8.99882 -8.20494 -6.32367 1.35855 1.37998 1.46733 1.68364 1.84713 1.89033 2.30968 2.44084 2.93098 3.09870 3.16174 3.44098 3.77660 3.85066 3.91706 3.99963 4.09473 4.11828 4.21049 4.31227 4.37173 4.46180 4.50653 4.53307 4.61816 4.65656 4.70494 4.74891 4.81200 4.84268 4.95215 5.02469 5.05257 5.07648 5.08707 5.11032 5.18048 5.19143 5.21050 5.32385 5.32630 5.39125 5.44751 5.59135 5.66024 5.87906 6.07234 6.11751 6.14992 6.61401 6.74247 6.82554 7.03176 7.33126 7.53524 8.85810 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007824 B = 0.004445 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3577.699786 B = 6297.357262 C = 7697.921377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.077 4.077 3 H 0.092 0.908 4 C -0.116 4.116 5 C -0.106 4.106 6 C 0.035 3.965 7 N -0.493 5.493 8 C 0.030 3.970 9 C 0.472 3.528 10 O -0.575 6.575 11 N -0.598 5.598 12 C 0.262 3.738 13 C -0.536 4.536 14 H 0.049 0.951 15 C 0.013 3.987 16 N -0.925 5.925 17 Si 0.952 3.048 18 H -0.284 1.284 19 H -0.277 1.277 20 H -0.265 1.265 21 C 0.113 3.887 22 C -0.036 4.036 23 C 0.245 3.755 24 N -0.488 5.488 25 C 0.081 3.919 26 H 0.041 0.959 27 C -0.116 4.116 28 C 0.091 3.909 29 O -0.601 6.601 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.032 0.968 39 H 0.114 0.886 40 H 0.135 0.865 41 H 0.031 0.969 42 H 0.002 0.998 43 H 0.265 0.735 44 H 0.104 0.896 45 H 0.080 0.920 46 H 0.119 0.881 47 H 0.138 0.862 48 H 0.063 0.937 49 H 0.046 0.954 50 H 0.065 0.935 51 H 0.059 0.941 52 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.314 18.869 -8.937 21.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.095 4.095 3 H 0.110 0.890 4 C -0.153 4.153 5 C -0.144 4.144 6 C -0.092 4.092 7 N -0.216 5.216 8 C -0.101 4.101 9 C 0.260 3.740 10 O -0.455 6.455 11 N -0.329 5.329 12 C 0.140 3.860 13 C -0.575 4.575 14 H 0.067 0.933 15 C -0.186 4.186 16 N -0.565 5.565 17 Si 0.778 3.222 18 H -0.210 1.210 19 H -0.202 1.202 20 H -0.190 1.190 21 C -0.012 4.012 22 C -0.077 4.077 23 C -0.072 4.072 24 N -0.166 5.166 25 C -0.028 4.028 26 H 0.059 0.941 27 C -0.154 4.154 28 C 0.014 3.986 29 O -0.410 6.410 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.050 0.950 39 H 0.132 0.868 40 H 0.152 0.848 41 H 0.049 0.951 42 H 0.020 0.980 43 H 0.074 0.926 44 H 0.122 0.878 45 H 0.099 0.901 46 H 0.137 0.863 47 H 0.156 0.844 48 H 0.082 0.918 49 H 0.065 0.935 50 H 0.083 0.917 51 H 0.077 0.923 52 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 4.822 19.022 -8.158 21.252 hybrid contribution -1.359 -1.702 0.440 2.221 sum 3.464 17.320 -7.717 19.276 Atomic orbital electron populations 1.21874 0.95133 1.01105 1.02433 1.21174 0.95169 1.00097 0.93082 0.88982 1.21636 0.96287 0.99513 0.97909 1.21506 0.95178 1.01657 0.96013 1.22348 1.00009 0.96397 0.90480 1.62552 1.07641 1.50248 1.01123 1.22659 1.03770 0.88008 0.95659 1.22603 0.80243 0.90571 0.80579 1.90603 1.37631 1.74983 1.42294 1.48264 1.46377 1.12294 1.25940 1.18731 0.94215 0.77613 0.95400 1.21715 1.10908 0.92506 1.32362 0.93274 1.25671 1.00251 0.95526 0.97162 1.70017 1.41524 0.98565 1.46367 0.85642 0.79814 0.77860 0.78889 1.21012 1.20232 1.18980 1.21496 0.86783 1.00613 0.92313 1.19812 0.89744 1.03395 0.94739 1.29150 0.92931 0.91899 0.93209 1.81276 1.11955 1.11629 1.11743 1.21731 0.87908 0.98295 0.94865 0.94132 1.21605 1.00897 0.95896 0.96997 1.22105 0.97672 0.90763 0.88101 1.86439 1.73708 1.30661 1.50151 0.92365 0.90854 0.94587 0.94627 0.90244 0.91050 0.89914 0.89672 0.94988 0.86820 0.84758 0.95137 0.97970 0.92613 0.87804 0.90143 0.86329 0.84401 0.91827 0.93517 0.91704 0.92268 0.75536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 8.87 71.98 0.64 -2.50 16 2 C -0.08 -1.64 2.11 -10.74 -0.02 -1.67 16 3 H 0.09 1.67 6.35 -2.39 -0.02 1.66 16 4 C -0.12 -2.45 5.29 30.67 0.16 -2.29 16 5 C -0.11 -2.04 6.09 30.65 0.19 -1.85 16 6 C 0.04 0.84 5.00 86.33 0.43 1.28 16 7 N -0.49 -11.49 3.96 -875.66 -3.47 -14.96 16 8 C 0.03 0.71 3.69 85.56 0.32 1.02 16 9 C 0.47 16.33 7.07 87.66 0.62 16.95 16 10 O -0.57 -25.59 11.22 -3.03 -0.03 -25.62 16 11 N -0.60 -21.06 2.46 -826.15 -2.03 -23.09 16 12 C 0.26 12.60 5.16 85.64 0.44 13.04 16 13 C -0.54 -29.15 9.39 25.60 0.24 -28.91 16 14 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 15 C 0.01 0.73 5.46 84.65 0.46 1.19 16 16 N -0.92 -53.95 13.29 21.45 0.28 -53.66 16 17 Si 0.95 44.34 29.54 68.60 2.03 46.36 16 18 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 C 0.11 2.75 5.09 86.38 0.44 3.19 16 22 C -0.04 -0.63 5.98 28.79 0.17 -0.46 16 23 C 0.25 5.25 15.44 89.44 1.38 6.63 16 24 N -0.49 -13.39 18.54 20.01 0.37 -13.01 16 25 C 0.08 2.16 1.26 44.94 0.06 2.22 16 26 H 0.04 1.52 5.69 -2.38 -0.01 1.51 16 27 C -0.12 -3.03 4.51 30.59 0.14 -2.89 16 28 C 0.09 1.77 6.50 71.98 0.47 2.24 16 29 O -0.60 -12.37 13.66 -148.98 -2.04 -14.41 16 30 H 0.06 1.23 6.42 -2.38 -0.02 1.21 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.08 1.68 8.12 -2.39 -0.02 1.66 16 38 H 0.03 1.06 5.67 -2.39 -0.01 1.04 16 39 H 0.11 2.52 5.19 -2.39 -0.01 2.50 16 40 H 0.13 2.11 6.91 -2.39 -0.02 2.09 16 41 H 0.03 1.47 8.07 -2.39 -0.02 1.45 16 42 H 0.00 0.12 7.42 -2.39 -0.02 0.11 16 43 H 0.26 14.67 8.31 -92.70 -0.77 13.90 16 44 H 0.10 1.97 6.58 -2.39 -0.02 1.96 16 45 H 0.08 2.22 8.07 -2.39 -0.02 2.20 16 46 H 0.12 2.18 8.14 -2.38 -0.02 2.16 16 47 H 0.14 1.63 7.13 -2.39 -0.02 1.62 16 48 H 0.06 1.77 6.37 -2.39 -0.02 1.76 16 49 H 0.05 1.40 6.32 -2.39 -0.02 1.38 16 50 H 0.06 1.15 7.24 -2.39 -0.02 1.13 16 51 H 0.06 1.00 6.25 -2.39 -0.01 0.98 16 52 H 0.40 4.15 9.12 -74.05 -0.68 3.48 16 Total: -1.00 -74.89 400.93 1.50 -73.39 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.26 Total: 17.82 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 6.13 Total: 7.18 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -4.84 Total: -104.73 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -2.07 Total: -40.03 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -74.89 1.50 -73.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595704790.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.956 kcal (2) G-P(sol) polarization free energy of solvation -74.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds