Wall clock time and date at job start Tue Mar 31 2020 22:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.53858 * 2 1 4 4 C 1.53130 * 109.50123 * 239.90736 * 2 1 3 5 5 C 1.53116 * 109.21002 * 297.74245 * 4 2 1 6 6 C 1.53031 * 109.28353 * 302.31469 * 5 4 2 7 7 N 1.46845 * 109.52275 * 59.17796 * 6 5 4 8 8 C 1.46899 * 111.00097 * 174.16392 * 7 6 5 9 9 C 1.50704 * 109.47136 * 288.31769 * 8 7 6 10 10 O 1.21290 * 119.99853 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00161 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99763 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47123 * 89.99901 * 12 11 9 14 14 H 1.08001 * 120.00029 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99840 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00153 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00189 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46744 * 59.99791 * 17 15 13 19 19 H 1.48503 * 109.47422 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47486 * 300.00093 * 17 15 13 21 21 C 1.46502 * 120.00036 * 359.97438 * 11 9 8 22 22 C 1.52996 * 109.46760 * 90.00178 * 21 11 9 23 23 C 1.47198 * 109.46829 * 179.97438 * 22 21 11 24 24 N 8.39698 * 101.82602 * 111.46258 * 2 1 3 25 25 C 1.46846 * 111.19994 * 298.26226 * 7 6 5 26 26 H 1.08999 * 109.46254 * 301.73190 * 25 7 6 27 27 C 1.53000 * 109.46455 * 181.75951 * 25 7 6 28 28 C 1.52993 * 109.47366 * 178.83513 * 27 25 7 29 29 O 1.42905 * 109.47417 * 185.25082 * 28 27 25 30 30 H 1.09000 * 109.47191 * 180.09416 * 1 2 3 31 31 H 1.08999 * 109.47346 * 300.09367 * 1 2 3 32 32 H 1.08995 * 109.47440 * 60.09057 * 1 2 3 33 33 H 1.09000 * 109.51994 * 177.81020 * 4 2 1 34 34 H 1.08994 * 109.52202 * 57.68211 * 4 2 1 35 35 H 1.09000 * 109.50196 * 62.25764 * 5 4 2 36 36 H 1.09003 * 109.50145 * 182.36931 * 5 4 2 37 37 H 1.09001 * 109.46518 * 179.19463 * 6 5 4 38 38 H 1.09003 * 109.46143 * 299.17823 * 6 5 4 39 39 H 1.08997 * 109.47224 * 48.31597 * 8 7 6 40 40 H 1.08996 * 109.47484 * 168.32154 * 8 7 6 41 41 H 1.09004 * 109.46745 * 209.99592 * 12 11 9 42 42 H 1.08998 * 109.47239 * 329.99459 * 12 11 9 43 43 H 0.96996 * 120.00561 * 179.97438 * 16 15 13 44 44 H 1.09000 * 109.46738 * 210.00662 * 21 11 9 45 45 H 1.08997 * 109.46774 * 330.00540 * 21 11 9 46 46 H 1.08996 * 109.47504 * 300.00059 * 22 21 11 47 47 H 1.08997 * 109.47182 * 60.00611 * 22 21 11 48 48 H 1.09004 * 109.46877 * 298.83576 * 27 25 7 49 49 H 1.09000 * 109.47490 * 58.82994 * 27 25 7 50 50 H 1.09003 * 109.47105 * 305.25106 * 28 27 25 51 51 H 1.09005 * 109.47336 * 65.25101 * 28 27 25 52 52 H 0.96699 * 113.99942 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0411 -0.7238 -1.2489 5 6 1.5749 -2.1817 -1.2126 6 6 2.0845 -2.8435 0.0697 7 7 1.5676 -2.1164 1.2361 8 6 1.9224 -2.8039 2.4848 9 6 1.1082 -4.0657 2.6123 10 8 0.3105 -4.3626 1.7483 11 7 1.2657 -4.8636 3.6871 12 6 0.4746 -6.0905 3.8107 13 6 1.2168 -7.2337 3.1680 14 1 2.1812 -7.0635 2.7126 15 6 0.6643 -8.4969 3.1605 16 7 -0.5103 -8.7042 3.7146 17 14 1.5839 -9.9140 2.3633 18 1 2.8922 -10.0986 3.0411 19 1 0.7820 -11.1576 2.4887 20 1 1.8090 -9.6124 0.9268 21 6 2.2289 -4.5047 4.7310 22 6 1.5360 -3.6453 5.7904 23 6 2.5035 -3.2852 6.8396 24 7 3.2508 -3.0072 7.6488 25 6 2.0410 -0.7264 1.2479 26 1 3.1309 -0.7139 1.2540 27 6 1.5162 -0.0196 2.4993 28 6 2.0331 1.4201 2.5266 29 8 1.6453 2.0423 3.7532 30 1 -0.3633 -1.0277 0.0017 31 1 -0.3634 0.5153 0.8891 32 1 -0.3634 0.5124 -0.8907 33 1 3.1304 -0.6901 -1.2691 34 1 1.6450 -0.2367 -2.1399 35 1 0.4856 -2.2160 -1.2316 36 1 1.9713 -2.7123 -2.0783 37 1 1.7422 -3.8777 0.1055 38 1 3.1742 -2.8210 0.0816 39 1 2.9829 -3.0556 2.4723 40 1 1.7141 -2.1500 3.3315 41 1 0.3095 -6.3115 4.8653 42 1 -0.4857 -5.9552 3.3131 43 1 -0.8993 -9.5927 3.7091 44 1 2.6163 -5.4116 5.1952 45 1 3.0516 -3.9429 4.2887 46 1 1.1486 -2.7385 5.3261 47 1 0.7133 -4.2071 6.2327 48 1 0.4263 -0.0141 2.4833 49 1 1.8638 -0.5474 3.3874 50 1 3.1204 1.4173 2.4485 51 1 1.6101 1.9740 1.6885 52 1 1.9403 2.9592 3.8396 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595704792.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:06 Heat of formation + Delta-G solvation = -58.011275 kcal Electronic energy + Delta-G solvation = -31054.126065 eV Core-core repulsion = 27053.678389 eV Total energy + Delta-G solvation = -4000.447676 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.27905 -38.80425 -37.06635 -36.77981 -35.19773 -34.13274 -33.28760 -32.82764 -30.79197 -29.49345 -28.28292 -26.61921 -26.39959 -23.99174 -23.90515 -23.25001 -21.93532 -20.89957 -18.62776 -18.45510 -17.71361 -17.55705 -16.55424 -16.43697 -16.04558 -15.90476 -15.40904 -15.20046 -14.70291 -14.45713 -14.33062 -14.20438 -14.00706 -13.72233 -13.59623 -13.22463 -13.16380 -12.88436 -12.48112 -12.39995 -12.35942 -12.19770 -12.03602 -11.91200 -11.73175 -11.50812 -11.40548 -11.25596 -11.19990 -10.97407 -10.87239 -10.80700 -10.60398 -10.59268 -10.33941 -10.18502 -10.14471 -9.97075 -9.69624 -8.93932 -8.45447 -8.10978 -7.78250 -6.06997 -4.11668 2.76445 2.84616 3.30360 3.34709 3.35435 3.41436 3.46916 3.80812 4.09406 4.34773 4.44030 4.55161 4.68352 4.81290 4.87509 4.99310 5.04857 5.06918 5.13537 5.17384 5.21170 5.25693 5.28971 5.34706 5.38176 5.45401 5.52565 5.53902 5.59054 5.66092 5.75327 5.85304 5.86858 5.88547 5.90936 6.00728 6.09578 6.09975 6.20895 6.26518 6.37011 6.58886 6.90283 7.12751 7.20576 7.36666 7.41178 7.48005 7.60872 7.89219 8.19876 8.32907 8.87712 9.07265 9.53819 11.00982 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009754 B = 0.003839 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.903538 B = 7291.177981 C = 9483.861424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 H 0.068 0.932 4 C -0.117 4.117 5 C -0.116 4.116 6 C 0.056 3.944 7 N -0.507 5.507 8 C 0.024 3.976 9 C 0.510 3.490 10 O -0.513 6.513 11 N -0.600 5.600 12 C 0.247 3.753 13 C -0.528 4.528 14 H 0.056 0.944 15 C 0.063 3.937 16 N -0.893 5.893 17 Si 0.895 3.105 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.119 3.881 22 C -0.051 4.051 23 C 0.217 3.783 24 N -0.446 5.446 25 C 0.095 3.905 26 H 0.039 0.961 27 C -0.123 4.123 28 C 0.077 3.923 29 O -0.574 6.574 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.024 0.976 39 H 0.057 0.943 40 H 0.102 0.898 41 H 0.033 0.967 42 H 0.047 0.953 43 H 0.264 0.736 44 H 0.093 0.907 45 H 0.072 0.928 46 H 0.106 0.894 47 H 0.118 0.882 48 H 0.086 0.914 49 H 0.073 0.927 50 H 0.042 0.958 51 H 0.049 0.951 52 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.543 20.182 -5.074 21.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 H 0.087 0.913 4 C -0.154 4.154 5 C -0.153 4.153 6 C -0.071 4.071 7 N -0.232 5.232 8 C -0.107 4.107 9 C 0.295 3.705 10 O -0.387 6.387 11 N -0.333 5.333 12 C 0.128 3.872 13 C -0.567 4.567 14 H 0.074 0.926 15 C -0.139 4.139 16 N -0.532 5.532 17 Si 0.723 3.277 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.008 4.008 22 C -0.093 4.093 23 C -0.101 4.101 24 N -0.124 5.124 25 C -0.014 4.014 26 H 0.057 0.943 27 C -0.161 4.161 28 C -0.001 4.001 29 O -0.379 6.379 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.113 0.887 38 H 0.043 0.957 39 H 0.075 0.925 40 H 0.120 0.880 41 H 0.051 0.949 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.112 0.888 45 H 0.090 0.910 46 H 0.124 0.876 47 H 0.136 0.864 48 H 0.105 0.895 49 H 0.091 0.909 50 H 0.060 0.940 51 H 0.067 0.933 52 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 5.284 19.671 -4.252 20.807 hybrid contribution 1.478 -0.466 -0.669 1.688 sum 6.763 19.205 -4.921 20.947 Atomic orbital electron populations 1.21846 0.94153 1.03663 1.00507 1.21220 0.97309 0.97910 0.93707 0.91331 1.21645 0.99967 0.96376 0.97460 1.21585 1.02468 0.94696 0.96584 1.22186 0.95885 0.99636 0.89389 1.61461 1.60046 1.00373 1.01324 1.22267 0.98116 0.95862 0.94429 1.20161 0.83886 0.84125 0.82307 1.90676 1.35896 1.72953 1.39179 1.48222 1.40764 1.24890 1.19456 1.19309 0.91650 0.78786 0.97443 1.21376 1.04898 0.92990 1.37434 0.92561 1.24902 0.94926 0.98718 0.95351 1.69907 1.16276 1.22674 1.44354 0.86603 0.79606 0.81421 0.80046 1.20314 1.21212 1.20217 1.21277 0.91321 0.99566 0.88651 1.19920 0.95148 1.02679 0.91539 1.29121 0.94001 0.92899 0.94035 1.81202 1.10544 1.09562 1.11060 1.21537 0.96413 0.88823 0.94636 0.94344 1.21736 1.03242 0.93438 0.97656 1.22199 0.97777 0.94097 0.86007 1.86494 1.80939 1.30847 1.39619 0.90329 0.92847 0.93707 0.92616 0.91948 0.90397 0.91839 0.88701 0.95748 0.92494 0.88003 0.94863 0.93537 0.92638 0.88827 0.90972 0.87604 0.86426 0.89519 0.90894 0.94002 0.93309 0.77562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.37 37.15 0.31 -1.16 16 2 C -0.08 -0.77 2.40 -90.47 -0.22 -0.98 16 3 H 0.07 0.53 6.63 -51.93 -0.34 0.19 16 4 C -0.12 -1.09 5.50 -26.60 -0.15 -1.24 16 5 C -0.12 -1.33 5.74 -26.66 -0.15 -1.48 16 6 C 0.06 0.77 5.11 -3.84 -0.02 0.75 16 7 N -0.51 -6.65 3.41 -228.05 -0.78 -7.43 16 8 C 0.02 0.32 3.82 -4.97 -0.02 0.30 16 9 C 0.51 9.30 7.36 -10.98 -0.08 9.22 16 10 O -0.51 -11.65 14.41 5.55 0.08 -11.57 16 11 N -0.60 -10.93 2.46 -175.05 -0.43 -11.36 16 12 C 0.25 5.83 5.16 -5.19 -0.03 5.80 16 13 C -0.53 -14.02 9.39 -34.44 -0.32 -14.34 16 14 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -25.49 13.29 55.43 0.74 -24.76 16 17 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.12 1.60 5.17 -4.04 -0.02 1.58 16 22 C -0.05 -0.56 6.03 -29.52 -0.18 -0.74 16 23 C 0.22 2.72 15.43 -20.76 -0.32 2.40 16 24 N -0.45 -6.73 18.54 42.16 0.78 -5.95 16 25 C 0.09 0.97 1.65 -67.66 -0.11 0.86 16 26 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 27 C -0.12 -1.22 4.44 -26.73 -0.12 -1.34 16 28 C 0.08 0.63 6.57 37.15 0.24 0.88 16 29 O -0.57 -5.22 13.66 -35.23 -0.48 -5.70 16 30 H 0.08 0.99 6.01 -51.93 -0.31 0.68 16 31 H 0.05 0.53 6.41 -51.93 -0.33 0.20 16 32 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.99 6.59 -51.93 -0.34 0.65 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 1.62 6.33 -51.93 -0.33 1.29 16 38 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.06 0.70 7.32 -51.93 -0.38 0.32 16 40 H 0.10 1.16 4.41 -51.93 -0.23 0.93 16 41 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 42 H 0.05 1.26 7.42 -51.93 -0.39 0.88 16 43 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 45 H 0.07 0.82 6.44 -51.93 -0.33 0.48 16 46 H 0.11 0.98 7.22 -51.93 -0.37 0.60 16 47 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 48 H 0.09 0.97 6.37 -51.93 -0.33 0.64 16 49 H 0.07 0.75 5.93 -51.93 -0.31 0.44 16 50 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 51 H 0.05 0.35 6.76 -51.93 -0.35 0.00 16 52 H 0.38 1.69 9.12 45.56 0.42 2.10 16 LS Contribution 404.57 15.07 6.10 6.10 Total: -1.00 -33.24 404.57 -8.00 -41.23 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -7.70 Total: 1.14 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -1.28 Total: 2.14 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: 0.31 Total: -49.49 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.40 Total: -17.27 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.24 -8.00 -41.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595704792.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.778 kcal (2) G-P(sol) polarization free energy of solvation -33.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds