Wall clock time and date at job start Tue Mar 31 2020 22:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.53858 * 2 1 4 4 C 1.53130 * 109.50123 * 239.90736 * 2 1 3 5 5 C 1.53116 * 109.21002 * 297.74245 * 4 2 1 6 6 C 1.53031 * 109.28353 * 302.31469 * 5 4 2 7 7 N 1.46845 * 109.52275 * 59.17796 * 6 5 4 8 8 C 1.46899 * 111.00097 * 174.16392 * 7 6 5 9 9 C 1.50704 * 109.47136 * 288.31769 * 8 7 6 10 10 O 1.21290 * 119.99853 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00161 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99763 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47123 * 89.99901 * 12 11 9 14 14 H 1.08001 * 120.00029 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99840 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00153 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00189 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46744 * 59.99791 * 17 15 13 19 19 H 1.48503 * 109.47422 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47486 * 300.00093 * 17 15 13 21 21 C 1.46502 * 120.00036 * 359.97438 * 11 9 8 22 22 C 1.52996 * 109.46760 * 90.00178 * 21 11 9 23 23 C 1.47198 * 109.46829 * 179.97438 * 22 21 11 24 24 N 8.39698 * 101.82602 * 111.46258 * 2 1 3 25 25 C 1.46846 * 111.19994 * 298.26226 * 7 6 5 26 26 H 1.08999 * 109.46254 * 301.73190 * 25 7 6 27 27 C 1.53000 * 109.46455 * 181.75951 * 25 7 6 28 28 C 1.52993 * 109.47366 * 178.83513 * 27 25 7 29 29 O 1.42905 * 109.47417 * 185.25082 * 28 27 25 30 30 H 1.09000 * 109.47191 * 180.09416 * 1 2 3 31 31 H 1.08999 * 109.47346 * 300.09367 * 1 2 3 32 32 H 1.08995 * 109.47440 * 60.09057 * 1 2 3 33 33 H 1.09000 * 109.51994 * 177.81020 * 4 2 1 34 34 H 1.08994 * 109.52202 * 57.68211 * 4 2 1 35 35 H 1.09000 * 109.50196 * 62.25764 * 5 4 2 36 36 H 1.09003 * 109.50145 * 182.36931 * 5 4 2 37 37 H 1.09001 * 109.46518 * 179.19463 * 6 5 4 38 38 H 1.09003 * 109.46143 * 299.17823 * 6 5 4 39 39 H 1.08997 * 109.47224 * 48.31597 * 8 7 6 40 40 H 1.08996 * 109.47484 * 168.32154 * 8 7 6 41 41 H 1.09004 * 109.46745 * 209.99592 * 12 11 9 42 42 H 1.08998 * 109.47239 * 329.99459 * 12 11 9 43 43 H 0.96996 * 120.00561 * 179.97438 * 16 15 13 44 44 H 1.09000 * 109.46738 * 210.00662 * 21 11 9 45 45 H 1.08997 * 109.46774 * 330.00540 * 21 11 9 46 46 H 1.08996 * 109.47504 * 300.00059 * 22 21 11 47 47 H 1.08997 * 109.47182 * 60.00611 * 22 21 11 48 48 H 1.09004 * 109.46877 * 298.83576 * 27 25 7 49 49 H 1.09000 * 109.47490 * 58.82994 * 27 25 7 50 50 H 1.09003 * 109.47105 * 305.25106 * 28 27 25 51 51 H 1.09005 * 109.47336 * 65.25101 * 28 27 25 52 52 H 0.96699 * 113.99942 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0411 -0.7238 -1.2489 5 6 1.5749 -2.1817 -1.2126 6 6 2.0845 -2.8435 0.0697 7 7 1.5676 -2.1164 1.2361 8 6 1.9224 -2.8039 2.4848 9 6 1.1082 -4.0657 2.6123 10 8 0.3105 -4.3626 1.7483 11 7 1.2657 -4.8636 3.6871 12 6 0.4746 -6.0905 3.8107 13 6 1.2168 -7.2337 3.1680 14 1 2.1812 -7.0635 2.7126 15 6 0.6643 -8.4969 3.1605 16 7 -0.5103 -8.7042 3.7146 17 14 1.5839 -9.9140 2.3633 18 1 2.8922 -10.0986 3.0411 19 1 0.7820 -11.1576 2.4887 20 1 1.8090 -9.6124 0.9268 21 6 2.2289 -4.5047 4.7310 22 6 1.5360 -3.6453 5.7904 23 6 2.5035 -3.2852 6.8396 24 7 3.2508 -3.0072 7.6488 25 6 2.0410 -0.7264 1.2479 26 1 3.1309 -0.7139 1.2540 27 6 1.5162 -0.0196 2.4993 28 6 2.0331 1.4201 2.5266 29 8 1.6453 2.0423 3.7532 30 1 -0.3633 -1.0277 0.0017 31 1 -0.3634 0.5153 0.8891 32 1 -0.3634 0.5124 -0.8907 33 1 3.1304 -0.6901 -1.2691 34 1 1.6450 -0.2367 -2.1399 35 1 0.4856 -2.2160 -1.2316 36 1 1.9713 -2.7123 -2.0783 37 1 1.7422 -3.8777 0.1055 38 1 3.1742 -2.8210 0.0816 39 1 2.9829 -3.0556 2.4723 40 1 1.7141 -2.1500 3.3315 41 1 0.3095 -6.3115 4.8653 42 1 -0.4857 -5.9552 3.3131 43 1 -0.8993 -9.5927 3.7091 44 1 2.6163 -5.4116 5.1952 45 1 3.0516 -3.9429 4.2887 46 1 1.1486 -2.7385 5.3261 47 1 0.7133 -4.2071 6.2327 48 1 0.4263 -0.0141 2.4833 49 1 1.8638 -0.5474 3.3874 50 1 3.1204 1.4173 2.4485 51 1 1.6101 1.9740 1.6885 52 1 1.9403 2.9592 3.8396 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595704792.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:05 Heat of formation + Delta-G solvation = -81.122382 kcal Electronic energy + Delta-G solvation = -31055.128238 eV Core-core repulsion = 27053.678389 eV Total energy + Delta-G solvation = -4001.449848 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.33356 -40.05978 -37.98110 -37.66462 -36.62522 -35.19841 -34.71708 -34.11454 -32.14013 -30.44682 -29.65782 -27.87017 -27.43576 -25.30523 -24.77765 -24.61313 -23.17269 -21.72790 -19.87199 -19.44802 -18.77031 -18.40830 -18.31676 -17.74963 -17.22908 -16.66796 -16.62194 -16.40311 -16.09488 -15.66948 -15.47184 -15.24085 -15.01556 -14.69124 -14.51334 -14.36992 -14.18292 -14.04176 -14.00230 -13.58602 -13.52720 -13.28833 -13.20934 -13.01673 -12.89847 -12.77315 -12.71115 -12.50190 -12.37295 -12.32726 -12.14750 -12.01548 -11.83926 -11.69025 -11.65601 -11.39254 -11.14085 -10.96209 -10.65748 -10.56940 -10.40401 -9.41138 -9.11119 -8.16027 -6.28487 1.39989 1.42750 1.49524 1.69229 1.83227 1.97685 2.23615 2.44471 2.86466 3.13876 3.17899 3.46434 3.76673 3.83938 3.95913 3.97092 4.03223 4.12026 4.16637 4.29810 4.33665 4.37885 4.41729 4.47623 4.52494 4.61352 4.67758 4.68730 4.73136 4.83555 4.85713 4.93361 4.99095 5.04952 5.11366 5.12426 5.15492 5.21182 5.25982 5.36599 5.37059 5.40395 5.50931 5.63972 5.72909 5.90789 6.08183 6.15745 6.28671 6.59662 6.79365 6.86919 6.98560 7.37451 7.62627 8.90328 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009754 B = 0.003839 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.903538 B = 7291.177981 C = 9483.861424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.080 4.080 3 H 0.096 0.904 4 C -0.111 4.111 5 C -0.114 4.114 6 C 0.060 3.940 7 N -0.525 5.525 8 C 0.037 3.963 9 C 0.503 3.497 10 O -0.567 6.567 11 N -0.602 5.602 12 C 0.263 3.737 13 C -0.538 4.538 14 H 0.052 0.948 15 C 0.012 3.988 16 N -0.926 5.926 17 Si 0.956 3.044 18 H -0.263 1.263 19 H -0.282 1.282 20 H -0.279 1.279 21 C 0.115 3.885 22 C -0.039 4.039 23 C 0.245 3.755 24 N -0.486 5.486 25 C 0.097 3.903 26 H 0.053 0.947 27 C -0.122 4.122 28 C 0.080 3.920 29 O -0.597 6.597 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.037 0.963 39 H 0.076 0.924 40 H 0.128 0.872 41 H 0.032 0.968 42 H 0.002 0.998 43 H 0.265 0.735 44 H 0.084 0.916 45 H 0.102 0.898 46 H 0.131 0.869 47 H 0.120 0.880 48 H 0.069 0.931 49 H 0.070 0.930 50 H 0.057 0.943 51 H 0.061 0.939 52 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.807 22.547 -5.332 24.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.099 4.099 3 H 0.114 0.886 4 C -0.148 4.148 5 C -0.151 4.151 6 C -0.068 4.068 7 N -0.250 5.250 8 C -0.094 4.094 9 C 0.292 3.708 10 O -0.445 6.445 11 N -0.334 5.334 12 C 0.142 3.858 13 C -0.577 4.577 14 H 0.071 0.929 15 C -0.187 4.187 16 N -0.566 5.566 17 Si 0.782 3.218 18 H -0.188 1.188 19 H -0.208 1.208 20 H -0.205 1.205 21 C -0.010 4.010 22 C -0.080 4.080 23 C -0.072 4.072 24 N -0.164 5.164 25 C -0.010 4.010 26 H 0.071 0.929 27 C -0.160 4.160 28 C 0.002 3.998 29 O -0.405 6.405 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.094 0.906 40 H 0.146 0.854 41 H 0.050 0.950 42 H 0.020 0.980 43 H 0.074 0.926 44 H 0.102 0.898 45 H 0.120 0.880 46 H 0.149 0.851 47 H 0.138 0.862 48 H 0.087 0.913 49 H 0.088 0.912 50 H 0.075 0.925 51 H 0.079 0.921 52 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 7.592 22.082 -4.480 23.777 hybrid contribution 0.717 -1.180 -0.601 1.506 sum 8.308 20.902 -5.081 23.059 Atomic orbital electron populations 1.21774 0.95197 1.01690 1.01056 1.21271 0.96341 0.99165 0.93123 0.88603 1.21617 1.00747 0.94330 0.98118 1.21549 1.01154 0.96675 0.95760 1.22049 0.96392 0.97613 0.90736 1.61384 1.61004 1.01792 1.00800 1.22192 0.97773 0.93588 0.95817 1.21099 0.83426 0.85221 0.81086 1.90655 1.38371 1.74465 1.41039 1.48102 1.40982 1.23335 1.20935 1.18745 0.90333 0.80543 0.96212 1.21713 1.04817 0.94075 1.37123 0.92950 1.25714 0.95720 1.01364 0.95947 1.70020 1.17671 1.23221 1.45690 0.85636 0.78951 0.78409 0.78820 1.18814 1.20770 1.20501 1.21478 0.91165 1.00134 0.88180 1.19830 0.94410 1.03292 0.90442 1.29117 0.93126 0.91606 0.93347 1.81242 1.11748 1.11133 1.12323 1.21609 0.97134 0.86836 0.95470 0.92920 1.21698 1.02172 0.94941 0.97168 1.22172 0.98598 0.92819 0.86167 1.86437 1.81437 1.32585 1.40084 0.93534 0.92831 0.92625 0.91262 0.90639 0.92498 0.91329 0.93203 0.94497 0.90580 0.85406 0.95024 0.97995 0.92618 0.89770 0.87987 0.85082 0.86155 0.91283 0.91174 0.92483 0.92071 0.75349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.37 71.98 0.60 -2.07 16 2 C -0.08 -1.26 2.40 -10.70 -0.03 -1.29 16 3 H 0.10 1.06 6.63 -2.39 -0.02 1.04 16 4 C -0.11 -1.78 5.50 30.68 0.17 -1.61 16 5 C -0.11 -2.58 5.74 30.64 0.18 -2.41 16 6 C 0.06 1.62 5.11 86.32 0.44 2.07 16 7 N -0.52 -13.31 3.41 -875.42 -2.98 -16.29 16 8 C 0.04 0.93 3.82 85.56 0.33 1.26 16 9 C 0.50 18.68 7.36 87.66 0.64 19.32 16 10 O -0.57 -27.28 14.41 -3.06 -0.04 -27.32 16 11 N -0.60 -22.09 2.46 -826.12 -2.03 -24.12 16 12 C 0.26 12.91 5.16 85.63 0.44 13.35 16 13 C -0.54 -29.34 9.39 25.60 0.24 -29.10 16 14 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 15 C 0.01 0.65 5.46 84.65 0.46 1.11 16 16 N -0.93 -54.31 13.29 21.45 0.28 -54.03 16 17 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 18 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 21 C 0.12 2.93 5.17 86.38 0.45 3.38 16 22 C -0.04 -0.76 6.03 28.79 0.17 -0.59 16 23 C 0.25 5.62 15.43 89.44 1.38 7.00 16 24 N -0.49 -13.87 18.54 20.01 0.37 -13.50 16 25 C 0.10 1.74 1.65 44.98 0.07 1.81 16 26 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 27 C -0.12 -2.09 4.44 30.59 0.14 -1.96 16 28 C 0.08 1.02 6.57 71.98 0.47 1.50 16 29 O -0.60 -9.08 13.66 -148.98 -2.04 -11.12 16 30 H 0.05 1.20 6.01 -2.39 -0.01 1.19 16 31 H 0.05 1.01 6.41 -2.39 -0.02 0.99 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.06 1.52 6.59 -2.39 -0.02 1.51 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.05 1.80 6.33 -2.39 -0.02 1.79 16 38 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.08 1.67 7.32 -2.39 -0.02 1.65 16 40 H 0.13 2.55 4.41 -2.39 -0.01 2.54 16 41 H 0.03 1.55 8.07 -2.38 -0.02 1.53 16 42 H 0.00 0.11 7.42 -2.39 -0.02 0.09 16 43 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 44 H 0.08 2.34 8.07 -2.39 -0.02 2.32 16 45 H 0.10 2.01 6.44 -2.39 -0.02 2.00 16 46 H 0.13 2.01 7.22 -2.39 -0.02 2.00 16 47 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 48 H 0.07 1.44 6.37 -2.38 -0.02 1.42 16 49 H 0.07 1.22 5.93 -2.39 -0.01 1.20 16 50 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 51 H 0.06 0.63 6.76 -2.38 -0.02 0.61 16 52 H 0.40 2.35 9.12 -74.06 -0.68 1.67 16 Total: -1.00 -76.22 404.57 2.01 -74.21 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.26 Total: 14.42 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 6.16 Total: 11.78 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -4.36 Total: -107.94 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -2.08 Total: -38.44 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -76.22 2.01 -74.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595704792.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.909 kcal (2) G-P(sol) polarization free energy of solvation -76.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds