Wall clock time and date at job start Tue Mar 31 2020 20:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46746 * 2 1 4 4 C 1.52994 * 109.47302 * 120.00656 * 2 1 3 5 5 C 1.53001 * 109.46825 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46927 * 299.99797 * 5 4 2 7 7 C 1.52994 * 109.47202 * 60.00433 * 6 5 4 8 8 C 1.53001 * 109.46562 * 240.00522 * 2 1 3 9 9 H 1.08994 * 109.47611 * 299.99849 * 8 2 1 10 10 N 1.46503 * 109.47175 * 60.00050 * 8 2 1 11 11 C 1.34774 * 119.99795 * 204.99700 * 10 8 2 12 12 O 1.21346 * 120.00507 * 359.72446 * 11 10 8 13 13 C 1.49453 * 119.99766 * 179.97438 * 11 10 8 14 14 O 1.21347 * 120.00020 * 353.07249 * 13 11 10 15 15 N 1.34778 * 119.99932 * 173.06142 * 13 11 10 16 16 C 1.47084 * 120.88364 * 181.22356 * 15 13 11 17 17 C 1.53693 * 108.27787 * 128.75946 * 16 15 13 18 18 N 1.46901 * 109.25524 * 54.08200 * 17 16 15 19 19 C 1.46902 * 110.99948 * 172.60792 * 18 17 16 20 20 C 1.50701 * 109.47082 * 59.57409 * 19 18 17 21 21 H 1.08000 * 120.00113 * 355.10847 * 20 19 18 22 22 C 1.37875 * 120.00111 * 175.11312 * 20 19 18 23 23 N 1.31509 * 119.99762 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00181 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46914 * 89.99427 * 24 22 20 26 26 H 1.48494 * 109.47385 * 209.99876 * 24 22 20 27 27 H 1.48502 * 109.46998 * 329.99948 * 24 22 20 28 28 C 1.46899 * 111.27117 * 296.75912 * 18 17 16 29 29 C 1.47087 * 120.88076 * 1.51120 * 15 13 11 30 30 H 1.09001 * 109.47140 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46629 * 299.98898 * 1 2 3 32 32 H 1.08993 * 109.47528 * 59.99142 * 1 2 3 33 33 H 1.09000 * 109.47391 * 60.00253 * 4 2 1 34 34 H 1.08997 * 109.47060 * 299.99428 * 4 2 1 35 35 H 1.09007 * 109.47065 * 179.97438 * 5 4 2 36 36 H 1.08994 * 109.47146 * 60.00291 * 5 4 2 37 37 H 1.08996 * 109.47164 * 299.99582 * 6 5 4 38 38 H 1.09010 * 109.46618 * 180.02562 * 6 5 4 39 39 H 1.09001 * 109.47026 * 179.97438 * 7 6 5 40 40 H 1.09007 * 109.47312 * 59.99656 * 7 6 5 41 41 H 0.96996 * 120.00164 * 24.99829 * 10 8 2 42 42 H 1.09001 * 109.63015 * 248.53092 * 16 15 13 43 43 H 1.09000 * 109.62304 * 9.10629 * 16 15 13 44 44 H 1.09005 * 109.64678 * 294.08594 * 17 16 15 45 45 H 1.08998 * 109.42251 * 173.95055 * 17 16 15 46 46 H 1.08996 * 109.47377 * 179.57069 * 19 18 17 47 47 H 1.08994 * 109.47096 * 299.57717 * 19 18 17 48 48 H 0.97004 * 119.99750 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.49185 * 303.14266 * 28 18 17 50 50 H 1.09006 * 109.51263 * 183.08061 * 28 18 17 51 51 H 1.08997 * 109.62312 * 350.89013 * 29 15 13 52 52 H 1.08999 * 109.62982 * 111.46995 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5701 -0.7218 1.2487 6 6 4.0795 -1.4434 -0.0007 7 6 3.5694 -0.7220 -1.2498 8 6 2.0399 -0.7212 -1.2494 9 1 1.6766 -1.7488 -1.2495 10 7 1.5515 -0.0304 -2.4454 11 6 1.4228 -0.7027 -3.6064 12 8 1.7161 -1.8788 -3.6624 13 6 0.9240 0.0019 -4.8265 14 8 0.5166 1.1420 -4.7448 15 7 0.9269 -0.6290 -6.0175 16 6 0.4655 0.0548 -7.2352 17 6 1.5467 -0.1035 -8.3160 18 7 1.8577 -1.5292 -8.4849 19 6 2.7567 -1.7402 -9.6274 20 6 4.0389 -0.9802 -9.4048 21 1 4.1424 -0.3362 -8.5440 22 6 5.0798 -1.1070 -10.3000 23 7 4.9539 -1.8915 -11.3479 24 14 6.6688 -0.1644 -10.0244 25 1 7.5975 -0.9876 -9.2089 26 1 7.2976 0.1399 -11.3348 27 1 6.3745 1.1039 -9.3102 28 6 2.4252 -2.1001 -7.2561 29 6 1.3857 -2.0217 -6.1329 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8902 32 1 -0.3634 0.5139 -0.8898 33 1 1.6768 -1.7490 1.2490 34 1 1.6769 -0.2076 2.1391 35 1 3.9335 -1.2354 2.1388 36 1 3.9337 0.3056 1.2486 37 1 3.7159 -2.4709 -0.0005 38 1 5.1696 -1.4441 -0.0007 39 1 3.9327 -1.2358 -2.1398 40 1 3.9331 0.3056 -1.2499 41 1 1.3209 0.9107 -2.4018 42 1 -0.4667 -0.3950 -7.5769 43 1 0.3091 1.1127 -7.0240 44 1 2.4471 0.4319 -8.0148 45 1 1.1794 0.3028 -9.2584 46 1 2.9768 -2.8032 -9.7252 47 1 2.2764 -1.3833 -10.5384 48 1 5.6864 -1.9810 -11.9775 49 1 3.3134 -1.5369 -6.9698 50 1 2.6954 -3.1418 -7.4296 51 1 1.8380 -2.3373 -5.1927 52 1 0.5403 -2.6673 -6.3707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602223713.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:22 Heat of formation + Delta-G solvation = -65.641407 kcal Electronic energy + Delta-G solvation = -30623.586279 eV Core-core repulsion = 26622.807736 eV Total energy + Delta-G solvation = -4000.778543 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.02585 -39.57845 -38.18861 -37.55461 -34.96580 -34.06276 -32.84022 -32.29955 -30.65203 -30.07354 -28.34241 -26.79541 -25.71030 -24.45670 -23.20764 -22.61668 -21.87122 -21.48482 -20.75514 -20.19500 -19.17906 -17.54245 -17.06698 -16.39754 -16.10876 -15.91795 -15.39846 -14.99602 -14.81592 -14.70947 -14.44687 -14.38420 -14.19069 -14.11136 -13.68753 -13.61052 -13.33033 -13.23184 -12.77411 -12.67902 -12.36313 -12.26686 -11.95845 -11.84468 -11.58910 -11.41693 -11.26943 -11.14185 -11.03470 -10.92465 -10.84823 -10.78442 -10.67690 -10.57524 -10.52358 -10.25366 -9.93136 -9.68364 -9.36547 -8.92082 -8.52277 -8.45874 -7.24488 -6.06151 -4.15544 1.45407 2.33719 3.24950 3.25170 3.32203 3.35276 3.52249 4.17815 4.29581 4.34755 4.37983 4.48566 4.70738 4.81013 4.98193 5.02398 5.04547 5.09068 5.10292 5.24195 5.31331 5.35405 5.43415 5.50977 5.55320 5.62251 5.64166 5.66757 5.72914 5.78384 5.82201 5.82794 5.90949 5.93031 5.96544 5.97745 6.04942 6.12105 6.39817 6.53894 6.61238 6.63531 6.75239 7.00239 7.21935 7.43167 7.48347 7.77415 7.85882 7.97643 8.04774 8.20289 8.25244 8.94331 9.51744 10.98942 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014127 B = 0.002805 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.497098 B = 9980.334202 C =11143.867641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.099 4.099 3 H 0.077 0.923 4 C -0.110 4.110 5 C -0.123 4.123 6 C -0.116 4.116 7 C -0.133 4.133 8 C 0.149 3.851 9 H 0.093 0.907 10 N -0.696 5.696 11 C 0.514 3.486 12 O -0.506 6.506 13 C 0.501 3.499 14 O -0.538 6.538 15 N -0.567 5.567 16 C 0.110 3.890 17 C 0.051 3.949 18 N -0.543 5.543 19 C 0.187 3.813 20 C -0.551 4.551 21 H 0.055 0.945 22 C 0.066 3.934 23 N -0.890 5.890 24 Si 0.888 3.112 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.275 1.275 28 C 0.052 3.948 29 C 0.056 3.944 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.411 0.589 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.043 0.957 45 H 0.080 0.920 46 H 0.036 0.964 47 H 0.029 0.971 48 H 0.263 0.737 49 H 0.040 0.960 50 H 0.079 0.921 51 H 0.148 0.852 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.419 2.508 24.844 26.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.118 4.118 3 H 0.095 0.905 4 C -0.148 4.148 5 C -0.160 4.160 6 C -0.154 4.154 7 C -0.171 4.171 8 C 0.045 3.955 9 H 0.111 0.889 10 N -0.348 5.348 11 C 0.296 3.704 12 O -0.383 6.383 13 C 0.283 3.717 14 O -0.417 6.417 15 N -0.298 5.298 16 C -0.012 4.012 17 C -0.078 4.078 18 N -0.267 5.267 19 C 0.062 3.938 20 C -0.590 4.590 21 H 0.074 0.926 22 C -0.137 4.137 23 N -0.528 5.528 24 Si 0.716 3.284 25 H -0.206 1.206 26 H -0.211 1.211 27 H -0.200 1.200 28 C -0.077 4.077 29 C -0.065 4.065 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.247 0.753 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.062 0.938 45 H 0.098 0.902 46 H 0.054 0.946 47 H 0.048 0.952 48 H 0.072 0.928 49 H 0.058 0.942 50 H 0.097 0.903 51 H 0.164 0.836 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.783 1.942 24.551 25.828 hybrid contribution 1.722 1.361 -0.057 2.196 sum -6.061 3.304 24.493 25.447 Atomic orbital electron populations 1.21860 0.94500 1.02316 1.02084 1.21415 0.96228 1.00104 0.94009 0.90455 1.21554 0.95641 1.00896 0.96723 1.21588 0.95443 1.00974 0.98011 1.21488 1.00635 0.99573 0.93737 1.21949 0.94633 1.01513 0.99045 1.21152 0.93977 0.97579 0.82821 0.88897 1.45878 1.65269 1.14873 1.08812 1.20329 0.78354 0.86952 0.84780 1.90373 1.49460 1.15876 1.82590 1.19914 0.80709 0.86399 0.84638 1.90718 1.47936 1.17549 1.85469 1.48145 1.60097 1.15118 1.06485 1.22131 0.98004 0.97930 0.83153 1.22319 0.96668 0.91507 0.97345 1.62524 1.45989 1.13020 1.05151 1.19766 0.88940 0.97461 0.87651 1.21740 1.00104 1.27838 1.09344 0.92645 1.24951 0.98562 0.95149 0.95020 1.69939 1.32541 1.37609 1.12730 0.86654 0.83791 0.80355 0.77595 1.20598 1.21065 1.19998 1.22241 0.95024 1.00638 0.89823 1.23456 0.99035 0.79839 1.04137 0.92434 0.92335 0.92246 0.91535 0.91418 0.91771 0.91869 0.91582 0.91542 0.90923 0.91580 0.75269 0.90677 0.89319 0.93838 0.90163 0.94616 0.95246 0.92761 0.94211 0.90299 0.83580 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.04 37.16 0.34 -0.66 16 2 C -0.10 -0.65 2.30 -90.62 -0.21 -0.86 16 3 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 4 C -0.11 -0.63 5.20 -26.73 -0.14 -0.77 16 5 C -0.12 -0.72 5.92 -26.73 -0.16 -0.88 16 6 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 7 C -0.13 -1.18 5.49 -26.76 -0.15 -1.33 16 8 C 0.15 1.31 1.89 -67.95 -0.13 1.18 16 9 H 0.09 0.93 7.58 -51.93 -0.39 0.54 16 10 N -0.70 -7.31 4.37 -54.26 -0.24 -7.55 16 11 C 0.51 7.03 7.77 -11.58 -0.09 6.94 16 12 O -0.51 -7.60 12.70 5.50 0.07 -7.53 16 13 C 0.50 7.90 7.77 -11.58 -0.09 7.81 16 14 O -0.54 -9.11 15.95 5.50 0.09 -9.02 16 15 N -0.57 -9.34 3.00 -172.68 -0.52 -9.86 16 16 C 0.11 1.80 6.62 -3.36 -0.02 1.77 16 17 C 0.05 0.99 5.17 -3.46 -0.02 0.97 16 18 N -0.54 -11.51 4.83 -235.47 -1.14 -12.64 16 19 C 0.19 4.76 5.11 -4.97 -0.03 4.74 16 20 C -0.55 -15.08 7.76 -34.44 -0.27 -15.35 16 21 H 0.06 1.53 5.88 -52.49 -0.31 1.22 16 22 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 23 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 24 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 C 0.05 1.02 5.24 -3.70 -0.02 1.00 16 29 C 0.06 0.93 6.35 -3.60 -0.02 0.90 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.33 8.14 -51.92 -0.42 -0.10 16 32 H 0.06 0.44 7.44 -51.93 -0.39 0.05 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.41 3.94 7.88 -40.82 -0.32 3.62 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.09 1.40 7.07 -51.93 -0.37 1.04 16 44 H 0.04 0.94 6.62 -51.93 -0.34 0.60 16 45 H 0.08 1.52 8.11 -51.93 -0.42 1.10 16 46 H 0.04 0.97 8.07 -51.93 -0.42 0.56 16 47 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 49 H 0.04 0.86 7.10 -51.93 -0.37 0.49 16 50 H 0.08 1.53 8.06 -51.93 -0.42 1.12 16 51 H 0.15 2.38 3.92 -56.52 -0.22 2.15 16 52 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 398.07 15.07 6.00 6.00 Total: -1.00 -30.35 398.07 -10.30 -40.65 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -9.02 Total: 2.54 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -1.26 Total: 6.23 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -1.16 Total: -55.35 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: 0.16 Total: -16.55 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.35 -10.30 -40.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602223713.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.994 kcal (2) G-P(sol) polarization free energy of solvation -30.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds