Wall clock time and date at job start Tue Mar 31 2020 20:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46746 * 2 1 4 4 C 1.52994 * 109.47302 * 120.00656 * 2 1 3 5 5 C 1.53001 * 109.46825 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46927 * 299.99797 * 5 4 2 7 7 C 1.52994 * 109.47202 * 60.00433 * 6 5 4 8 8 C 1.53001 * 109.46562 * 240.00522 * 2 1 3 9 9 H 1.08994 * 109.47611 * 299.99849 * 8 2 1 10 10 N 1.46503 * 109.47175 * 60.00050 * 8 2 1 11 11 C 1.34774 * 119.99795 * 204.99700 * 10 8 2 12 12 O 1.21346 * 120.00507 * 359.72446 * 11 10 8 13 13 C 1.49453 * 119.99766 * 179.97438 * 11 10 8 14 14 O 1.21347 * 120.00020 * 353.07249 * 13 11 10 15 15 N 1.34778 * 119.99932 * 173.06142 * 13 11 10 16 16 C 1.47084 * 120.88364 * 181.22356 * 15 13 11 17 17 C 1.53693 * 108.27787 * 128.75946 * 16 15 13 18 18 N 1.46901 * 109.25524 * 54.08200 * 17 16 15 19 19 C 1.46902 * 110.99948 * 172.60792 * 18 17 16 20 20 C 1.50701 * 109.47082 * 59.57409 * 19 18 17 21 21 H 1.08000 * 120.00113 * 355.10847 * 20 19 18 22 22 C 1.37875 * 120.00111 * 175.11312 * 20 19 18 23 23 N 1.31509 * 119.99762 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00181 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46914 * 89.99427 * 24 22 20 26 26 H 1.48494 * 109.47385 * 209.99876 * 24 22 20 27 27 H 1.48502 * 109.46998 * 329.99948 * 24 22 20 28 28 C 1.46899 * 111.27117 * 296.75912 * 18 17 16 29 29 C 1.47087 * 120.88076 * 1.51120 * 15 13 11 30 30 H 1.09001 * 109.47140 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46629 * 299.98898 * 1 2 3 32 32 H 1.08993 * 109.47528 * 59.99142 * 1 2 3 33 33 H 1.09000 * 109.47391 * 60.00253 * 4 2 1 34 34 H 1.08997 * 109.47060 * 299.99428 * 4 2 1 35 35 H 1.09007 * 109.47065 * 179.97438 * 5 4 2 36 36 H 1.08994 * 109.47146 * 60.00291 * 5 4 2 37 37 H 1.08996 * 109.47164 * 299.99582 * 6 5 4 38 38 H 1.09010 * 109.46618 * 180.02562 * 6 5 4 39 39 H 1.09001 * 109.47026 * 179.97438 * 7 6 5 40 40 H 1.09007 * 109.47312 * 59.99656 * 7 6 5 41 41 H 0.96996 * 120.00164 * 24.99829 * 10 8 2 42 42 H 1.09001 * 109.63015 * 248.53092 * 16 15 13 43 43 H 1.09000 * 109.62304 * 9.10629 * 16 15 13 44 44 H 1.09005 * 109.64678 * 294.08594 * 17 16 15 45 45 H 1.08998 * 109.42251 * 173.95055 * 17 16 15 46 46 H 1.08996 * 109.47377 * 179.57069 * 19 18 17 47 47 H 1.08994 * 109.47096 * 299.57717 * 19 18 17 48 48 H 0.97004 * 119.99750 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.49185 * 303.14266 * 28 18 17 50 50 H 1.09006 * 109.51263 * 183.08061 * 28 18 17 51 51 H 1.08997 * 109.62312 * 350.89013 * 29 15 13 52 52 H 1.08999 * 109.62982 * 111.46995 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5701 -0.7218 1.2487 6 6 4.0795 -1.4434 -0.0007 7 6 3.5694 -0.7220 -1.2498 8 6 2.0399 -0.7212 -1.2494 9 1 1.6766 -1.7488 -1.2495 10 7 1.5515 -0.0304 -2.4454 11 6 1.4228 -0.7027 -3.6064 12 8 1.7161 -1.8788 -3.6624 13 6 0.9240 0.0019 -4.8265 14 8 0.5166 1.1420 -4.7448 15 7 0.9269 -0.6290 -6.0175 16 6 0.4655 0.0548 -7.2352 17 6 1.5467 -0.1035 -8.3160 18 7 1.8577 -1.5292 -8.4849 19 6 2.7567 -1.7402 -9.6274 20 6 4.0389 -0.9802 -9.4048 21 1 4.1424 -0.3362 -8.5440 22 6 5.0798 -1.1070 -10.3000 23 7 4.9539 -1.8915 -11.3479 24 14 6.6688 -0.1644 -10.0244 25 1 7.5975 -0.9876 -9.2089 26 1 7.2976 0.1399 -11.3348 27 1 6.3745 1.1039 -9.3102 28 6 2.4252 -2.1001 -7.2561 29 6 1.3857 -2.0217 -6.1329 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8902 32 1 -0.3634 0.5139 -0.8898 33 1 1.6768 -1.7490 1.2490 34 1 1.6769 -0.2076 2.1391 35 1 3.9335 -1.2354 2.1388 36 1 3.9337 0.3056 1.2486 37 1 3.7159 -2.4709 -0.0005 38 1 5.1696 -1.4441 -0.0007 39 1 3.9327 -1.2358 -2.1398 40 1 3.9331 0.3056 -1.2499 41 1 1.3209 0.9107 -2.4018 42 1 -0.4667 -0.3950 -7.5769 43 1 0.3091 1.1127 -7.0240 44 1 2.4471 0.4319 -8.0148 45 1 1.1794 0.3028 -9.2584 46 1 2.9768 -2.8032 -9.7252 47 1 2.2764 -1.3833 -10.5384 48 1 5.6864 -1.9810 -11.9775 49 1 3.3134 -1.5369 -6.9698 50 1 2.6954 -3.1418 -7.4296 51 1 1.8380 -2.3373 -5.1927 52 1 0.5403 -2.6673 -6.3707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602223713.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:19 Heat of formation + Delta-G solvation = -85.500052 kcal Electronic energy + Delta-G solvation = -30624.447415 eV Core-core repulsion = 26622.807736 eV Total energy + Delta-G solvation = -4001.639679 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.15954 -40.57175 -39.26546 -38.98383 -36.32346 -35.23636 -34.29675 -33.43016 -32.12720 -30.81098 -30.05420 -27.70758 -27.17163 -25.79159 -24.59738 -24.00339 -23.03808 -22.20433 -21.83562 -21.19189 -20.39145 -18.88494 -18.37235 -18.12094 -17.25288 -17.11522 -16.72569 -16.43061 -16.04233 -15.80412 -15.68187 -15.41398 -15.35957 -15.09321 -15.05337 -14.86574 -14.43564 -14.20208 -14.02987 -13.72385 -13.60259 -13.33404 -13.08188 -12.98086 -12.86317 -12.77244 -12.53492 -12.51258 -12.46074 -12.19267 -12.14331 -11.92681 -11.84740 -11.81296 -11.68438 -11.45535 -11.34787 -11.16785 -10.64828 -10.25375 -10.16986 -9.91117 -9.09482 -8.19744 -6.39026 0.27210 1.21905 1.32943 1.33691 1.43886 2.05803 2.33481 2.37781 3.05440 3.19253 3.30697 3.57984 3.74242 3.91286 3.96741 4.06672 4.15227 4.20351 4.28377 4.32807 4.38729 4.45654 4.50568 4.51483 4.52695 4.59549 4.72378 4.77524 4.82470 4.87475 4.99070 4.99515 5.05012 5.09965 5.12930 5.16027 5.17180 5.25022 5.28004 5.29258 5.30167 5.35419 5.39966 5.47631 5.57307 5.69564 5.91940 5.99648 6.13547 6.23909 6.41825 6.63650 6.80505 6.88177 7.32459 8.82891 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014127 B = 0.002805 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.497098 B = 9980.334202 C =11143.867641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 H 0.086 0.914 4 C -0.108 4.108 5 C -0.119 4.119 6 C -0.115 4.115 7 C -0.131 4.131 8 C 0.148 3.852 9 H 0.082 0.918 10 N -0.679 5.679 11 C 0.514 3.486 12 O -0.522 6.522 13 C 0.501 3.499 14 O -0.548 6.548 15 N -0.575 5.575 16 C 0.120 3.880 17 C 0.054 3.946 18 N -0.538 5.538 19 C 0.200 3.800 20 C -0.559 4.559 21 H 0.050 0.950 22 C 0.015 3.985 23 N -0.922 5.922 24 Si 0.954 3.046 25 H -0.274 1.274 26 H -0.278 1.278 27 H -0.272 1.272 28 C 0.055 3.945 29 C 0.072 3.928 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.045 0.955 40 H 0.070 0.930 41 H 0.417 0.583 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.018 0.982 45 H 0.082 0.918 46 H 0.012 0.988 47 H 0.009 0.991 48 H 0.266 0.734 49 H 0.014 0.986 50 H 0.076 0.924 51 H 0.155 0.845 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.621 3.500 27.386 28.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 H 0.104 0.896 4 C -0.145 4.145 5 C -0.157 4.157 6 C -0.153 4.153 7 C -0.169 4.169 8 C 0.045 3.955 9 H 0.100 0.900 10 N -0.331 5.331 11 C 0.296 3.704 12 O -0.401 6.401 13 C 0.284 3.716 14 O -0.428 6.428 15 N -0.307 5.307 16 C -0.002 4.002 17 C -0.075 4.075 18 N -0.262 5.262 19 C 0.074 3.926 20 C -0.598 4.598 21 H 0.068 0.932 22 C -0.185 4.185 23 N -0.562 5.562 24 Si 0.779 3.221 25 H -0.199 1.199 26 H -0.203 1.203 27 H -0.197 1.197 28 C -0.074 4.074 29 C -0.049 4.049 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.255 0.745 42 H 0.112 0.888 43 H 0.116 0.884 44 H 0.036 0.964 45 H 0.100 0.900 46 H 0.030 0.970 47 H 0.027 0.973 48 H 0.075 0.925 49 H 0.033 0.967 50 H 0.094 0.906 51 H 0.171 0.829 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.997 2.958 27.136 28.444 hybrid contribution 1.762 1.067 -0.815 2.215 sum -6.235 4.025 26.320 27.347 Atomic orbital electron populations 1.21851 0.94329 1.02103 1.02347 1.21399 0.96263 1.00334 0.93065 0.89578 1.21557 0.95451 1.00913 0.96622 1.21573 0.95531 1.01098 0.97459 1.21483 1.00759 0.99383 0.93642 1.21917 0.94563 1.01605 0.98863 1.21310 0.93967 0.97260 0.82962 0.89989 1.45884 1.63762 1.15089 1.08331 1.20005 0.78719 0.86733 0.84956 1.90348 1.50621 1.16415 1.82704 1.20258 0.80099 0.86239 0.85005 1.90707 1.48284 1.18006 1.85762 1.48207 1.60488 1.15117 1.06921 1.22024 0.97232 0.98758 0.82174 1.22324 0.96700 0.89776 0.98726 1.62468 1.44568 1.14437 1.04724 1.19437 0.89025 0.95522 0.88636 1.21938 1.01018 1.27757 1.09073 0.93198 1.25758 1.01921 0.96040 0.94745 1.70045 1.33717 1.38865 1.13556 0.85623 0.79716 0.79014 0.77755 1.19908 1.20283 1.19665 1.22253 0.95264 0.99849 0.90032 1.23341 0.98488 0.80249 1.02840 0.92900 0.90874 0.93192 0.91661 0.89854 0.90679 0.91441 0.91915 0.91371 0.93580 0.91176 0.74503 0.88840 0.88435 0.96414 0.89981 0.97029 0.97260 0.92479 0.96728 0.90565 0.82891 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.04 71.98 0.65 -1.01 16 2 C -0.09 -1.01 2.30 -10.79 -0.02 -1.03 16 3 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.11 -0.94 5.20 30.59 0.16 -0.78 16 5 C -0.12 -1.11 5.92 30.59 0.18 -0.93 16 6 C -0.11 -1.50 5.92 30.59 0.18 -1.32 16 7 C -0.13 -2.22 5.49 30.58 0.17 -2.06 16 8 C 0.15 2.43 1.89 44.98 0.09 2.52 16 9 H 0.08 1.58 7.58 -2.39 -0.02 1.56 16 10 N -0.68 -13.50 4.37 -443.95 -1.94 -15.45 16 11 C 0.51 13.68 7.77 87.27 0.68 14.35 16 12 O -0.52 -15.41 12.70 -3.23 -0.04 -15.46 16 13 C 0.50 15.28 7.77 87.27 0.68 15.96 16 14 O -0.55 -17.82 15.95 -3.24 -0.05 -17.87 16 15 N -0.58 -18.46 3.00 -818.60 -2.46 -20.92 16 16 C 0.12 3.80 6.62 86.50 0.57 4.37 16 17 C 0.05 2.10 5.17 86.54 0.45 2.55 16 18 N -0.54 -23.23 4.83 -898.88 -4.34 -27.57 16 19 C 0.20 10.54 5.11 85.56 0.44 10.98 16 20 C -0.56 -31.30 7.76 25.60 0.20 -31.10 16 21 H 0.05 2.81 5.88 -2.91 -0.02 2.79 16 22 C 0.02 0.86 5.46 84.66 0.46 1.33 16 23 N -0.92 -54.85 13.29 21.45 0.28 -54.56 16 24 Si 0.95 44.42 29.54 68.60 2.03 46.45 16 25 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 27 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 28 C 0.06 2.19 5.24 86.38 0.45 2.65 16 29 C 0.07 2.32 6.35 86.35 0.55 2.87 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.05 0.65 7.44 -2.39 -0.02 0.63 16 33 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.07 0.57 8.14 -2.38 -0.02 0.56 16 36 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.42 7.36 7.88 -92.71 -0.73 6.63 16 42 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 43 H 0.10 2.95 7.07 -2.39 -0.02 2.93 16 44 H 0.02 0.78 6.62 -2.38 -0.02 0.76 16 45 H 0.08 3.13 8.11 -2.39 -0.02 3.11 16 46 H 0.01 0.66 8.07 -2.39 -0.02 0.64 16 47 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 48 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 49 H 0.01 0.65 7.10 -2.39 -0.02 0.63 16 50 H 0.08 3.03 8.06 -2.38 -0.02 3.02 16 51 H 0.16 4.90 3.92 -75.02 -0.29 4.60 16 52 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -65.41 398.07 -0.75 -66.16 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -0.11 Total: 19.86 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: 5.88 Total: 19.35 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -8.46 Total: -118.50 kcal Atomic # 8 Polarization: -33.23 SS G_CDS: -0.09 Total: -33.33 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -65.41 -0.75 -66.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602223713.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.337 kcal (2) G-P(sol) polarization free energy of solvation -65.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds