Wall clock time and date at job start Tue Mar 31 2020 21:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47192 * 2 1 4 4 C 1.53001 * 109.46852 * 119.99769 * 2 1 3 5 5 C 1.53001 * 109.46895 * 180.02562 * 4 2 1 6 6 C 1.53008 * 109.46851 * 299.99890 * 5 4 2 7 7 C 1.53001 * 109.46912 * 60.00294 * 6 5 4 8 8 H 1.09000 * 109.46761 * 179.97438 * 7 6 5 9 9 N 1.46499 * 109.47098 * 60.00139 * 7 6 5 10 10 C 1.34771 * 120.00443 * 84.99864 * 9 7 6 11 11 O 1.21353 * 119.99983 * 359.97438 * 10 9 7 12 12 C 1.49446 * 120.00240 * 179.97438 * 10 9 7 13 13 O 1.21354 * 119.99897 * 6.45860 * 12 10 9 14 14 N 1.34774 * 120.00148 * 186.17921 * 12 10 9 15 15 C 1.47085 * 120.88048 * 358.37504 * 14 12 10 16 16 C 1.53702 * 108.27756 * 128.75066 * 15 14 12 17 17 N 1.46903 * 109.25397 * 54.08365 * 16 15 14 18 18 C 1.46897 * 110.99769 * 172.60995 * 17 16 15 19 19 C 1.50704 * 109.46974 * 294.29967 * 18 17 16 20 20 H 1.07992 * 119.99886 * 359.97438 * 19 18 17 21 21 C 1.37876 * 119.99926 * 180.02562 * 19 18 17 22 22 N 1.31511 * 119.99991 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99785 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47131 * 89.99698 * 23 21 19 25 25 H 1.48506 * 109.46644 * 209.99662 * 23 21 19 26 26 H 1.48497 * 109.47070 * 329.99592 * 23 21 19 27 27 C 1.46899 * 111.26675 * 296.75274 * 17 16 15 28 28 C 1.47086 * 120.88312 * 178.64674 * 14 12 10 29 29 C 1.52999 * 109.47007 * 239.99920 * 2 1 3 30 30 H 1.09002 * 109.46782 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47225 * 300.00053 * 1 2 3 32 32 H 1.08998 * 109.46642 * 60.00442 * 1 2 3 33 33 H 1.09000 * 109.47131 * 300.00174 * 4 2 1 34 34 H 1.08998 * 109.47033 * 60.00134 * 4 2 1 35 35 H 1.08998 * 109.47426 * 60.00061 * 5 4 2 36 36 H 1.08999 * 109.47004 * 180.02562 * 5 4 2 37 37 H 1.08999 * 109.46993 * 299.99794 * 6 5 4 38 38 H 1.09003 * 109.46606 * 179.97438 * 6 5 4 39 39 H 0.97000 * 119.99454 * 264.99150 * 9 7 6 40 40 H 1.08996 * 109.62676 * 248.51562 * 15 14 12 41 41 H 1.08993 * 109.62787 * 9.09930 * 15 14 12 42 42 H 1.08993 * 109.64631 * 294.08117 * 16 15 14 43 43 H 1.08998 * 109.42042 * 173.94451 * 16 15 14 44 44 H 1.08998 * 109.47440 * 54.29808 * 18 17 16 45 45 H 1.08999 * 109.47252 * 174.29998 * 18 17 16 46 46 H 0.97004 * 119.99991 * 179.97438 * 22 21 19 47 47 H 1.09002 * 109.49793 * 303.14674 * 27 17 16 48 48 H 1.09009 * 109.51461 * 183.07894 * 27 17 16 49 49 H 1.08994 * 109.62711 * 350.90288 * 28 14 12 50 50 H 1.08992 * 109.62545 * 111.47877 * 28 14 12 51 51 H 1.08999 * 109.47197 * 60.00221 * 29 2 1 52 52 H 1.08999 * 109.46957 * 299.99581 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2496 6 6 4.0805 -1.4417 0.0003 7 6 3.5705 -0.7204 -1.2489 8 1 3.9346 -1.2338 -2.1388 9 7 4.0585 0.6610 -1.2486 10 6 5.2804 0.9442 -1.7416 11 8 5.9767 0.0548 -2.1853 12 6 5.7779 2.3534 -1.7418 13 8 5.1343 3.2241 -1.1938 14 7 6.9440 2.6563 -2.3458 15 6 7.7600 1.6096 -2.9798 16 6 8.0939 2.0594 -4.4111 17 7 8.7153 3.3898 -4.3682 18 6 9.2091 3.7831 -5.6946 19 6 10.3336 2.8671 -6.1038 20 1 10.6501 2.0726 -5.4444 21 6 10.9592 3.0441 -7.3197 22 7 10.5741 4.0120 -8.1226 23 14 12.3526 1.9082 -7.8273 24 1 11.7986 0.7430 -8.5625 25 1 13.2965 2.6448 -8.7059 26 1 13.0705 1.4340 -6.6169 27 6 7.7868 4.3945 -3.8330 28 6 7.4373 4.0414 -2.3834 29 6 2.0400 -0.7213 -1.2492 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.6766 -0.2074 2.1392 34 1 1.6767 -1.7489 1.2493 35 1 3.9330 0.3071 1.2498 36 1 3.9333 -1.2349 2.1394 37 1 3.7175 -2.4694 0.0002 38 1 5.1705 -1.4408 0.0004 39 1 3.5020 1.3718 -0.8937 40 1 8.6802 1.4691 -2.4129 41 1 7.1988 0.6757 -3.0096 42 1 7.1803 2.1036 -5.0039 43 1 8.7866 1.3488 -4.8620 44 1 8.3990 3.7105 -6.4202 45 1 9.5723 4.8101 -5.6572 46 1 11.0145 4.1367 -8.9778 47 1 6.8774 4.4062 -4.4339 48 1 8.2564 5.3778 -3.8647 49 1 6.6627 4.7160 -2.0187 50 1 8.3271 4.1302 -1.7602 51 1 1.6767 -0.2074 -2.1392 52 1 1.6767 -1.7489 -1.2491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602226455.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:40 Heat of formation + Delta-G solvation = -62.507063 kcal Electronic energy + Delta-G solvation = -30346.557815 eV Core-core repulsion = 26345.915187 eV Total energy + Delta-G solvation = -4000.642628 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.12090 -39.68646 -38.22880 -37.57185 -34.88979 -34.03947 -32.54094 -32.37630 -30.75379 -30.36086 -28.37664 -26.82712 -26.08378 -24.39859 -23.25989 -22.82593 -21.91692 -21.59621 -20.87046 -19.44698 -19.43515 -17.61964 -16.92277 -16.33836 -16.24397 -15.79472 -15.72352 -15.35980 -14.84051 -14.73538 -14.45881 -14.39855 -14.20934 -13.93887 -13.81396 -13.61899 -13.46682 -12.90563 -12.83770 -12.65642 -12.56584 -12.28244 -12.22101 -11.94285 -11.92301 -11.50344 -11.37770 -11.25089 -11.02532 -10.95754 -10.78575 -10.71785 -10.61508 -10.55602 -10.51378 -10.45044 -9.89843 -9.44893 -9.26483 -8.94841 -8.57356 -8.44155 -7.30040 -6.04309 -4.05969 1.40391 2.30361 3.19458 3.31573 3.37800 3.42149 3.49311 4.21555 4.26673 4.29689 4.33103 4.41283 4.68018 4.75521 4.88132 4.98025 5.02300 5.04440 5.20426 5.25456 5.29513 5.31056 5.33622 5.42434 5.45338 5.48826 5.58278 5.63076 5.66563 5.68542 5.77700 5.81807 5.82836 5.86660 5.90502 5.96131 6.00482 6.05034 6.24880 6.33916 6.51267 6.57710 6.65026 6.96183 7.24116 7.30149 7.39036 7.72792 7.77085 7.98961 8.04036 8.14699 8.50178 9.01425 9.58462 11.06540 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021467 B = 0.002288 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.029832 B =12237.289509 C =12757.177687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.070 0.930 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.131 4.131 7 C 0.143 3.857 8 H 0.094 0.906 9 N -0.694 5.694 10 C 0.512 3.488 11 O -0.505 6.505 12 C 0.501 3.499 13 O -0.539 6.539 14 N -0.568 5.568 15 C 0.055 3.945 16 C 0.053 3.947 17 N -0.537 5.537 18 C 0.193 3.807 19 C -0.508 4.508 20 H 0.064 0.936 21 C 0.055 3.945 22 N -0.898 5.898 23 Si 0.898 3.102 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.272 1.272 27 C 0.042 3.958 28 C 0.113 3.887 29 C -0.122 4.122 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.410 0.590 40 H 0.073 0.927 41 H 0.150 0.850 42 H 0.022 0.978 43 H 0.097 0.903 44 H -0.009 1.009 45 H 0.031 0.969 46 H 0.261 0.739 47 H 0.026 0.974 48 H 0.083 0.917 49 H 0.089 0.911 50 H 0.079 0.921 51 H 0.072 0.928 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.408 -9.544 18.140 28.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 H 0.088 0.912 4 C -0.151 4.151 5 C -0.159 4.159 6 C -0.169 4.169 7 C 0.039 3.961 8 H 0.112 0.888 9 N -0.348 5.348 10 C 0.294 3.706 11 O -0.382 6.382 12 C 0.283 3.717 13 O -0.417 6.417 14 N -0.300 5.300 15 C -0.066 4.066 16 C -0.076 4.076 17 N -0.263 5.263 18 C 0.068 3.932 19 C -0.547 4.547 20 H 0.082 0.918 21 C -0.146 4.146 22 N -0.538 5.538 23 Si 0.726 3.274 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.197 1.197 27 C -0.088 4.088 28 C -0.009 4.009 29 C -0.160 4.160 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.248 0.752 40 H 0.091 0.909 41 H 0.166 0.834 42 H 0.041 0.959 43 H 0.115 0.885 44 H 0.009 0.991 45 H 0.049 0.951 46 H 0.071 0.929 47 H 0.045 0.955 48 H 0.101 0.899 49 H 0.108 0.892 50 H 0.097 0.903 51 H 0.090 0.910 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.795 -9.660 18.233 27.911 hybrid contribution -0.008 0.014 -0.895 0.895 sum -18.803 -9.646 17.338 27.335 Atomic orbital electron populations 1.21820 0.94823 1.01889 1.01907 1.21170 0.95858 0.99653 0.94841 0.91184 1.21613 0.95499 1.00683 0.97345 1.21531 0.95473 1.01207 0.97708 1.21935 1.01586 0.99299 0.94126 1.21110 0.93943 0.81553 0.99536 0.88762 1.45942 1.16839 1.10696 1.61284 1.20325 0.82401 0.89623 0.78206 1.90379 1.54487 1.48401 1.44948 1.19935 0.82270 0.88726 0.80725 1.90718 1.57051 1.48946 1.45023 1.48195 1.19346 1.10454 1.52035 1.23594 0.96426 0.92950 0.93583 1.22428 0.97723 0.93344 0.94139 1.62128 1.34199 1.00623 1.29324 1.19727 0.94445 0.97058 0.81930 1.21145 1.16621 1.14967 1.01942 0.91762 1.24998 0.97480 0.95679 0.96478 1.69959 1.42085 1.31307 1.10435 0.86490 0.81878 0.80514 0.78499 1.20715 1.21283 1.19724 1.22388 0.95407 0.97409 0.93552 1.21945 0.99555 0.81317 0.98085 1.21918 0.93450 1.02195 0.98462 0.92598 0.92561 0.92542 0.91900 0.91799 0.91797 0.91824 0.90723 0.91094 0.75206 0.90864 0.83415 0.95943 0.88456 0.99148 0.95069 0.92907 0.95549 0.89854 0.89231 0.90291 0.90971 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.19 37.16 0.34 -0.41 16 2 C -0.10 -0.56 2.55 -90.62 -0.23 -0.79 16 3 H 0.07 0.45 6.50 -51.93 -0.34 0.12 16 4 C -0.11 -0.65 5.20 -26.73 -0.14 -0.79 16 5 C -0.12 -0.84 5.77 -26.73 -0.15 -0.99 16 6 C -0.13 -0.99 5.60 -26.73 -0.15 -1.14 16 7 C 0.14 1.15 2.78 -67.91 -0.19 0.96 16 8 H 0.09 0.87 7.58 -51.93 -0.39 0.47 16 9 N -0.69 -6.90 4.22 -54.21 -0.23 -7.13 16 10 C 0.51 6.75 7.77 -11.59 -0.09 6.66 16 11 O -0.51 -7.41 12.69 5.49 0.07 -7.34 16 12 C 0.50 7.59 7.77 -11.59 -0.09 7.50 16 13 O -0.54 -8.73 15.95 5.49 0.09 -8.64 16 14 N -0.57 -9.11 3.00 -172.69 -0.52 -9.63 16 15 C 0.06 0.92 6.39 -3.36 -0.02 0.89 16 16 C 0.05 1.04 5.47 -3.46 -0.02 1.02 16 17 N -0.54 -11.55 4.62 -235.46 -1.09 -12.64 16 18 C 0.19 5.01 4.72 -4.98 -0.02 4.99 16 19 C -0.51 -14.13 8.41 -34.44 -0.29 -14.42 16 20 H 0.06 1.76 7.13 -52.49 -0.37 1.39 16 21 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 22 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 23 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 27 C 0.04 0.76 5.62 -3.70 -0.02 0.74 16 28 C 0.11 1.78 6.59 -3.60 -0.02 1.75 16 29 C -0.12 -0.74 4.89 -26.71 -0.13 -0.87 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.52 7.60 -51.93 -0.39 0.13 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.41 3.80 6.35 -40.82 -0.26 3.54 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.15 2.39 3.90 -56.58 -0.22 2.17 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.10 2.04 6.67 -51.93 -0.35 1.69 16 44 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 45 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 46 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.08 1.45 7.99 -51.92 -0.41 1.03 16 49 H 0.09 1.33 7.07 -51.93 -0.37 0.96 16 50 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 51 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 52 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 398.02 15.07 6.00 6.00 Total: -1.00 -30.99 398.02 -10.29 -41.28 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -9.00 Total: 0.88 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -1.33 Total: 6.57 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -1.10 Total: -55.29 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: 0.16 Total: -15.98 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.99 -10.29 -41.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602226455.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.224 kcal (2) G-P(sol) polarization free energy of solvation -30.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds