Wall clock time and date at job start Tue Mar 31 2020 21:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47192 * 2 1 4 4 C 1.53001 * 109.46852 * 119.99769 * 2 1 3 5 5 C 1.53001 * 109.46895 * 180.02562 * 4 2 1 6 6 C 1.53008 * 109.46851 * 299.99890 * 5 4 2 7 7 C 1.53001 * 109.46912 * 60.00294 * 6 5 4 8 8 H 1.09000 * 109.46761 * 179.97438 * 7 6 5 9 9 N 1.46499 * 109.47098 * 60.00139 * 7 6 5 10 10 C 1.34771 * 120.00443 * 84.99864 * 9 7 6 11 11 O 1.21353 * 119.99983 * 359.97438 * 10 9 7 12 12 C 1.49446 * 120.00240 * 179.97438 * 10 9 7 13 13 O 1.21354 * 119.99897 * 6.45860 * 12 10 9 14 14 N 1.34774 * 120.00148 * 186.17921 * 12 10 9 15 15 C 1.47085 * 120.88048 * 358.37504 * 14 12 10 16 16 C 1.53702 * 108.27756 * 128.75066 * 15 14 12 17 17 N 1.46903 * 109.25397 * 54.08365 * 16 15 14 18 18 C 1.46897 * 110.99769 * 172.60995 * 17 16 15 19 19 C 1.50704 * 109.46974 * 294.29967 * 18 17 16 20 20 H 1.07992 * 119.99886 * 359.97438 * 19 18 17 21 21 C 1.37876 * 119.99926 * 180.02562 * 19 18 17 22 22 N 1.31511 * 119.99991 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99785 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47131 * 89.99698 * 23 21 19 25 25 H 1.48506 * 109.46644 * 209.99662 * 23 21 19 26 26 H 1.48497 * 109.47070 * 329.99592 * 23 21 19 27 27 C 1.46899 * 111.26675 * 296.75274 * 17 16 15 28 28 C 1.47086 * 120.88312 * 178.64674 * 14 12 10 29 29 C 1.52999 * 109.47007 * 239.99920 * 2 1 3 30 30 H 1.09002 * 109.46782 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47225 * 300.00053 * 1 2 3 32 32 H 1.08998 * 109.46642 * 60.00442 * 1 2 3 33 33 H 1.09000 * 109.47131 * 300.00174 * 4 2 1 34 34 H 1.08998 * 109.47033 * 60.00134 * 4 2 1 35 35 H 1.08998 * 109.47426 * 60.00061 * 5 4 2 36 36 H 1.08999 * 109.47004 * 180.02562 * 5 4 2 37 37 H 1.08999 * 109.46993 * 299.99794 * 6 5 4 38 38 H 1.09003 * 109.46606 * 179.97438 * 6 5 4 39 39 H 0.97000 * 119.99454 * 264.99150 * 9 7 6 40 40 H 1.08996 * 109.62676 * 248.51562 * 15 14 12 41 41 H 1.08993 * 109.62787 * 9.09930 * 15 14 12 42 42 H 1.08993 * 109.64631 * 294.08117 * 16 15 14 43 43 H 1.08998 * 109.42042 * 173.94451 * 16 15 14 44 44 H 1.08998 * 109.47440 * 54.29808 * 18 17 16 45 45 H 1.08999 * 109.47252 * 174.29998 * 18 17 16 46 46 H 0.97004 * 119.99991 * 179.97438 * 22 21 19 47 47 H 1.09002 * 109.49793 * 303.14674 * 27 17 16 48 48 H 1.09009 * 109.51461 * 183.07894 * 27 17 16 49 49 H 1.08994 * 109.62711 * 350.90288 * 28 14 12 50 50 H 1.08992 * 109.62545 * 111.47877 * 28 14 12 51 51 H 1.08999 * 109.47197 * 60.00221 * 29 2 1 52 52 H 1.08999 * 109.46957 * 299.99581 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2496 6 6 4.0805 -1.4417 0.0003 7 6 3.5705 -0.7204 -1.2489 8 1 3.9346 -1.2338 -2.1388 9 7 4.0585 0.6610 -1.2486 10 6 5.2804 0.9442 -1.7416 11 8 5.9767 0.0548 -2.1853 12 6 5.7779 2.3534 -1.7418 13 8 5.1343 3.2241 -1.1938 14 7 6.9440 2.6563 -2.3458 15 6 7.7600 1.6096 -2.9798 16 6 8.0939 2.0594 -4.4111 17 7 8.7153 3.3898 -4.3682 18 6 9.2091 3.7831 -5.6946 19 6 10.3336 2.8671 -6.1038 20 1 10.6501 2.0726 -5.4444 21 6 10.9592 3.0441 -7.3197 22 7 10.5741 4.0120 -8.1226 23 14 12.3526 1.9082 -7.8273 24 1 11.7986 0.7430 -8.5625 25 1 13.2965 2.6448 -8.7059 26 1 13.0705 1.4340 -6.6169 27 6 7.7868 4.3945 -3.8330 28 6 7.4373 4.0414 -2.3834 29 6 2.0400 -0.7213 -1.2492 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.6766 -0.2074 2.1392 34 1 1.6767 -1.7489 1.2493 35 1 3.9330 0.3071 1.2498 36 1 3.9333 -1.2349 2.1394 37 1 3.7175 -2.4694 0.0002 38 1 5.1705 -1.4408 0.0004 39 1 3.5020 1.3718 -0.8937 40 1 8.6802 1.4691 -2.4129 41 1 7.1988 0.6757 -3.0096 42 1 7.1803 2.1036 -5.0039 43 1 8.7866 1.3488 -4.8620 44 1 8.3990 3.7105 -6.4202 45 1 9.5723 4.8101 -5.6572 46 1 11.0145 4.1367 -8.9778 47 1 6.8774 4.4062 -4.4339 48 1 8.2564 5.3778 -3.8647 49 1 6.6627 4.7160 -2.0187 50 1 8.3271 4.1302 -1.7602 51 1 1.6767 -0.2074 -2.1392 52 1 1.6767 -1.7489 -1.2491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602226455.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:38 Heat of formation + Delta-G solvation = -82.575558 kcal Electronic energy + Delta-G solvation = -30347.428050 eV Core-core repulsion = 26345.915187 eV Total energy + Delta-G solvation = -4001.512863 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.19596 -40.63551 -39.25058 -38.99077 -36.23251 -35.15258 -34.35785 -33.09811 -32.20468 -31.04533 -30.12985 -27.74648 -27.28876 -25.74888 -24.74135 -23.74230 -23.29316 -22.31552 -22.08250 -20.77090 -20.10600 -18.81893 -18.50677 -18.08894 -17.26286 -16.89934 -16.60580 -16.38947 -16.31793 -16.02895 -15.73391 -15.57543 -15.44263 -15.10394 -15.04412 -14.69579 -14.38076 -14.22391 -14.03068 -13.68676 -13.37798 -13.21421 -13.11391 -13.05695 -12.92737 -12.74673 -12.70669 -12.58790 -12.42701 -12.36746 -12.16442 -12.11958 -11.88332 -11.78454 -11.42909 -11.30220 -11.14972 -10.99509 -10.63097 -10.33402 -10.14337 -9.92284 -9.09922 -8.21250 -6.31373 0.26204 1.22121 1.42208 1.43318 1.55148 2.04501 2.36437 2.41456 3.10927 3.18830 3.23986 3.70320 3.74789 3.80576 3.91227 3.99959 4.13285 4.18713 4.21896 4.27028 4.39514 4.41640 4.47126 4.53116 4.57086 4.65866 4.70951 4.76616 4.80496 4.85321 4.90719 4.96881 4.99889 5.04033 5.08809 5.11432 5.14595 5.17496 5.27113 5.28876 5.35506 5.39126 5.41651 5.50969 5.57393 5.63293 5.92839 6.01384 6.14720 6.26795 6.54428 6.62039 6.83918 6.88024 7.38354 8.90020 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021467 B = 0.002288 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.029832 B =12237.289509 C =12757.177687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 H 0.061 0.939 4 C -0.109 4.109 5 C -0.120 4.120 6 C -0.127 4.127 7 C 0.139 3.861 8 H 0.085 0.915 9 N -0.676 5.676 10 C 0.513 3.487 11 O -0.522 6.522 12 C 0.502 3.498 13 O -0.548 6.548 14 N -0.577 5.577 15 C 0.072 3.928 16 C 0.056 3.944 17 N -0.541 5.541 18 C 0.208 3.792 19 C -0.523 4.523 20 H 0.066 0.934 21 C 0.001 3.999 22 N -0.935 5.935 23 Si 0.970 3.030 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.263 1.263 27 C 0.042 3.958 28 C 0.122 3.878 29 C -0.116 4.116 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.049 0.951 39 H 0.415 0.585 40 H 0.077 0.923 41 H 0.159 0.841 42 H 0.011 0.989 43 H 0.082 0.918 44 H -0.041 1.041 45 H 0.009 0.991 46 H 0.264 0.736 47 H 0.018 0.982 48 H 0.089 0.911 49 H 0.103 0.897 50 H 0.090 0.910 51 H 0.071 0.929 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.287 -11.176 19.657 30.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.079 0.921 4 C -0.147 4.147 5 C -0.157 4.157 6 C -0.166 4.166 7 C 0.036 3.964 8 H 0.103 0.897 9 N -0.329 5.329 10 C 0.295 3.705 11 O -0.401 6.401 12 C 0.285 3.715 13 O -0.427 6.427 14 N -0.309 5.309 15 C -0.049 4.049 16 C -0.073 4.073 17 N -0.266 5.266 18 C 0.082 3.918 19 C -0.561 4.561 20 H 0.084 0.916 21 C -0.197 4.197 22 N -0.575 5.575 23 Si 0.795 3.205 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.187 1.187 27 C -0.087 4.087 28 C 0.000 4.000 29 C -0.154 4.154 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.068 0.932 39 H 0.254 0.746 40 H 0.096 0.904 41 H 0.175 0.825 42 H 0.029 0.971 43 H 0.100 0.900 44 H -0.023 1.023 45 H 0.027 0.973 46 H 0.073 0.927 47 H 0.036 0.964 48 H 0.107 0.893 49 H 0.121 0.879 50 H 0.108 0.892 51 H 0.090 0.910 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -19.723 -11.295 19.792 30.138 hybrid contribution 0.161 0.553 -1.319 1.440 sum -19.562 -10.742 18.472 28.971 Atomic orbital electron populations 1.21794 0.94044 1.02429 1.01941 1.21161 0.96457 0.99102 0.94729 0.92090 1.21586 0.94327 1.01383 0.97385 1.21512 0.96492 1.00197 0.97539 1.21904 1.00294 1.00338 0.94030 1.21310 0.95444 0.80134 0.99519 0.89707 1.45969 1.15545 1.11896 1.59539 1.20002 0.83293 0.88458 0.78793 1.90348 1.55183 1.48311 1.46281 1.20270 0.81618 0.89604 0.80000 1.90710 1.57084 1.49580 1.45286 1.48230 1.19820 1.10333 1.52492 1.23444 0.96893 0.93268 0.91300 1.22409 0.96556 0.92068 0.96296 1.62064 1.35895 1.02149 1.26483 1.19384 0.93232 0.95665 0.83514 1.21447 1.17098 1.15228 1.02319 0.91576 1.25930 1.00153 0.97212 0.96431 1.70088 1.43502 1.33023 1.10914 0.85362 0.78439 0.78394 0.78313 1.19845 1.20845 1.18748 1.22463 0.94304 0.96942 0.94983 1.21872 1.00465 0.81645 0.96059 1.21904 0.91506 1.03333 0.98619 0.91799 0.92395 0.92706 0.91548 0.90683 0.93310 0.91324 0.88923 0.93167 0.74619 0.90445 0.82513 0.97052 0.89972 1.02335 0.97322 0.92690 0.96422 0.89278 0.87893 0.89225 0.91044 0.88262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.19 71.98 0.66 -0.48 16 2 C -0.10 -0.90 2.55 -10.79 -0.03 -0.93 16 3 H 0.06 0.69 6.50 -2.39 -0.02 0.68 16 4 C -0.11 -0.99 5.20 30.59 0.16 -0.83 16 5 C -0.12 -1.46 5.77 30.60 0.18 -1.28 16 6 C -0.13 -1.73 5.60 30.60 0.17 -1.56 16 7 C 0.14 2.05 2.78 45.01 0.13 2.17 16 8 H 0.08 1.46 7.58 -2.39 -0.02 1.45 16 9 N -0.68 -12.74 4.22 -443.80 -1.87 -14.61 16 10 C 0.51 13.10 7.77 87.27 0.68 13.78 16 11 O -0.52 -14.96 12.69 -3.26 -0.04 -15.00 16 12 C 0.50 14.73 7.77 87.27 0.68 15.40 16 13 O -0.55 -17.06 15.95 -3.26 -0.05 -17.11 16 14 N -0.58 -18.03 3.00 -818.62 -2.46 -20.49 16 15 C 0.07 2.35 6.39 86.50 0.55 2.90 16 16 C 0.06 2.23 5.47 86.54 0.47 2.70 16 17 N -0.54 -23.72 4.62 -898.86 -4.15 -27.87 16 18 C 0.21 11.21 4.72 85.56 0.40 11.62 16 19 C -0.52 -29.62 8.41 25.60 0.22 -29.40 16 20 H 0.07 3.65 7.13 -2.91 -0.02 3.63 16 21 C 0.00 0.04 5.46 84.65 0.46 0.50 16 22 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 23 Si 0.97 44.32 29.54 68.60 2.03 46.35 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 26 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 27 C 0.04 1.54 5.62 86.38 0.49 2.03 16 28 C 0.12 3.71 6.59 86.35 0.57 4.27 16 29 C -0.12 -1.15 4.89 30.61 0.15 -1.00 16 30 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.05 0.74 7.60 -2.39 -0.02 0.72 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.42 7.19 6.35 -92.71 -0.59 6.60 16 40 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.16 4.99 3.90 -75.98 -0.30 4.69 16 42 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.08 3.52 6.67 -2.39 -0.02 3.50 16 44 H -0.04 -2.43 8.12 -2.39 -0.02 -2.45 16 45 H 0.01 0.50 7.97 -2.39 -0.02 0.48 16 46 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 47 H 0.02 0.67 8.14 -2.39 -0.02 0.66 16 48 H 0.09 3.13 7.99 -2.38 -0.02 3.11 16 49 H 0.10 2.90 7.07 -2.39 -0.02 2.88 16 50 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 51 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 52 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -66.92 398.02 -0.30 -67.22 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.03 Total: 17.84 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: 5.94 Total: 19.91 kcal Atomic # 7 Polarization: -111.00 SS G_CDS: -8.20 Total: -119.20 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -0.09 Total: -32.11 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -66.92 -0.30 -67.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602226455.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.356 kcal (2) G-P(sol) polarization free energy of solvation -66.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds