Wall clock time and date at job start Tue Mar 31 2020 21:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46928 * 2 1 4 4 C 1.53000 * 109.47229 * 240.00321 * 2 1 3 5 5 C 1.53003 * 109.47059 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47116 * 59.99971 * 5 4 2 7 7 C 1.53005 * 109.46844 * 299.99981 * 6 5 4 8 8 H 1.09001 * 109.47039 * 180.02562 * 7 6 5 9 9 N 1.46504 * 109.46862 * 299.99975 * 7 6 5 10 10 C 1.34779 * 119.99900 * 275.00219 * 9 7 6 11 11 O 1.21353 * 119.99821 * 359.97438 * 10 9 7 12 12 C 1.49449 * 119.99728 * 179.72736 * 10 9 7 13 13 O 1.21350 * 120.00068 * 6.65039 * 12 10 9 14 14 N 1.34779 * 119.99955 * 186.64609 * 12 10 9 15 15 C 1.47081 * 120.87743 * 7.93192 * 14 12 10 16 16 C 1.53703 * 108.27285 * 128.75822 * 15 14 12 17 17 N 1.46898 * 109.25982 * 54.08255 * 16 15 14 18 18 C 1.46894 * 111.00172 * 172.60850 * 17 16 15 19 19 C 1.50698 * 109.47119 * 59.51775 * 18 17 16 20 20 H 1.08000 * 120.00386 * 355.38641 * 19 18 17 21 21 C 1.37884 * 119.99990 * 175.38399 * 19 18 17 22 22 N 1.31510 * 119.99792 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99656 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47447 * 60.00332 * 23 21 19 25 25 H 1.48505 * 109.46846 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47479 * 299.99783 * 23 21 19 27 27 C 1.46901 * 111.26701 * 296.75676 * 17 16 15 28 28 C 1.47070 * 120.88382 * 188.21604 * 14 12 10 29 29 C 1.52996 * 109.47418 * 59.99910 * 7 6 5 30 30 H 1.08997 * 109.47371 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47579 * 300.00356 * 1 2 3 32 32 H 1.09001 * 109.47306 * 60.00166 * 1 2 3 33 33 H 1.09000 * 109.47289 * 60.00104 * 4 2 1 34 34 H 1.09002 * 109.46903 * 299.99694 * 4 2 1 35 35 H 1.09002 * 109.47169 * 299.99722 * 5 4 2 36 36 H 1.09005 * 109.46916 * 179.97438 * 5 4 2 37 37 H 1.08996 * 109.46980 * 179.97438 * 6 5 4 38 38 H 1.08997 * 109.47012 * 59.99471 * 6 5 4 39 39 H 0.97003 * 119.99987 * 95.00137 * 9 7 6 40 40 H 1.09002 * 109.63423 * 248.52055 * 15 14 12 41 41 H 1.08996 * 109.63310 * 9.10707 * 15 14 12 42 42 H 1.09004 * 109.64626 * 294.07849 * 16 15 14 43 43 H 1.09005 * 109.44270 * 173.96119 * 16 15 14 44 44 H 1.09000 * 109.46841 * 179.51467 * 18 17 16 45 45 H 1.08994 * 109.47171 * 299.51933 * 18 17 16 46 46 H 0.97002 * 119.99724 * 180.02562 * 22 21 19 47 47 H 1.09002 * 109.49776 * 303.14580 * 27 17 16 48 48 H 1.08996 * 109.51535 * 183.07479 * 27 17 16 49 49 H 1.09008 * 109.62851 * 350.89207 * 28 14 12 50 50 H 1.08999 * 109.63216 * 111.28165 * 28 14 12 51 51 H 1.09002 * 109.46928 * 60.00026 * 29 7 6 52 52 H 1.08999 * 109.47272 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0805 -1.4415 -0.0003 7 6 3.5704 -0.7203 1.2489 8 1 3.9345 -1.2336 2.1389 9 7 4.0583 0.6611 1.2486 10 6 5.2803 0.9443 1.7416 11 8 5.9762 0.0551 2.1862 12 6 5.7804 2.3527 1.7357 13 8 5.0437 3.2567 1.4002 14 7 7.0496 2.6187 2.1030 15 6 8.0088 1.5305 2.3460 16 6 9.2800 1.8177 1.5310 17 7 9.7715 3.1629 1.8579 18 6 11.0786 3.4114 1.2353 19 6 10.9550 3.2820 -0.2610 20 1 10.0201 2.9668 -0.7005 21 6 12.0354 3.5662 -1.0692 22 7 13.1739 3.9497 -0.5341 23 14 11.8818 3.4065 -2.9240 24 1 10.8180 4.3197 -3.4132 25 1 13.1746 3.7658 -3.5604 26 1 11.5313 2.0063 -3.2730 27 6 8.7994 4.1940 1.4709 28 6 7.5103 4.0044 2.2776 29 6 2.0405 -0.7208 1.2492 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.6767 -0.2073 -2.1393 34 1 1.6767 -1.7489 -1.2493 35 1 3.9330 0.3072 -1.2498 36 1 3.9334 -1.2348 -2.1394 37 1 5.1705 -1.4415 -0.0008 38 1 3.7175 -2.4693 -0.0001 39 1 3.5018 1.3719 0.8936 40 1 8.2528 1.4876 3.4075 41 1 7.5752 0.5823 2.0285 42 1 9.0530 1.7622 0.4663 43 1 10.0442 1.0810 1.7790 44 1 11.4152 4.4173 1.4864 45 1 11.8011 2.6837 1.6044 46 1 13.9338 4.1499 -1.1027 47 1 8.5791 4.1054 0.4071 48 1 9.2146 5.1809 1.6754 49 1 6.7468 4.6926 1.9147 50 1 7.7039 4.1957 3.3330 51 1 1.6775 -1.7486 1.2495 52 1 1.6771 -0.2074 2.1394 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602226460.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:02 Heat of formation + Delta-G solvation = -67.669841 kcal Electronic energy + Delta-G solvation = -30711.946481 eV Core-core repulsion = 26711.079978 eV Total energy + Delta-G solvation = -4000.866503 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.04526 -39.63691 -38.17637 -37.54081 -34.87863 -34.03507 -32.48455 -32.29964 -30.68692 -30.30584 -28.32873 -26.78838 -25.83226 -24.47058 -23.13136 -22.79625 -22.10078 -21.59247 -20.76442 -19.38053 -19.33635 -17.61847 -16.90482 -16.30568 -16.12008 -15.85939 -15.62671 -15.24466 -14.80378 -14.76548 -14.41904 -14.38885 -14.14806 -13.92891 -13.67667 -13.56422 -13.36651 -12.85578 -12.72302 -12.65490 -12.50948 -12.20924 -12.16322 -11.88949 -11.85640 -11.41754 -11.32054 -11.13606 -11.02653 -10.90079 -10.87764 -10.68090 -10.60006 -10.54644 -10.40451 -10.24460 -9.94809 -9.70160 -9.36581 -9.03879 -8.51880 -8.46024 -7.25323 -6.06212 -4.15634 1.46213 2.36701 3.24552 3.26624 3.31630 3.34266 3.54123 4.26512 4.30830 4.34350 4.37944 4.38394 4.72813 4.80837 4.97138 5.02803 5.06847 5.09440 5.24014 5.24194 5.28966 5.33648 5.42277 5.45397 5.52544 5.54664 5.62265 5.66835 5.72729 5.81216 5.83479 5.86513 5.89018 5.95475 5.95938 6.01511 6.07219 6.11195 6.35498 6.48729 6.60961 6.63249 6.73260 7.01854 7.21276 7.41765 7.47872 7.75280 7.85589 7.96925 8.05053 8.19194 8.24980 8.93935 9.51570 10.98888 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014487 B = 0.002806 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.248063 B = 9976.045398 C =10896.874807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.070 0.930 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.132 4.132 7 C 0.144 3.856 8 H 0.093 0.907 9 N -0.695 5.695 10 C 0.511 3.489 11 O -0.510 6.510 12 C 0.502 3.498 13 O -0.536 6.536 14 N -0.570 5.570 15 C 0.077 3.923 16 C 0.049 3.951 17 N -0.542 5.542 18 C 0.188 3.812 19 C -0.552 4.552 20 H 0.055 0.945 21 C 0.066 3.934 22 N -0.890 5.890 23 Si 0.889 3.111 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.277 1.277 27 C 0.052 3.948 28 C 0.111 3.889 29 C -0.122 4.122 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.410 0.590 40 H 0.071 0.929 41 H 0.130 0.870 42 H 0.041 0.959 43 H 0.079 0.921 44 H 0.035 0.965 45 H 0.030 0.970 46 H 0.263 0.737 47 H 0.043 0.957 48 H 0.080 0.920 49 H 0.089 0.911 50 H 0.075 0.925 51 H 0.081 0.919 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.793 -9.777 3.418 25.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 H 0.088 0.912 4 C -0.151 4.151 5 C -0.160 4.160 6 C -0.170 4.170 7 C 0.040 3.960 8 H 0.111 0.889 9 N -0.350 5.350 10 C 0.293 3.707 11 O -0.386 6.386 12 C 0.284 3.716 13 O -0.415 6.415 14 N -0.302 5.302 15 C -0.045 4.045 16 C -0.080 4.080 17 N -0.266 5.266 18 C 0.062 3.938 19 C -0.591 4.591 20 H 0.073 0.927 21 C -0.137 4.137 22 N -0.528 5.528 23 Si 0.716 3.284 24 H -0.203 1.203 25 H -0.211 1.211 26 H -0.203 1.203 27 C -0.078 4.078 28 C -0.011 4.011 29 C -0.159 4.159 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.248 0.752 40 H 0.090 0.910 41 H 0.147 0.853 42 H 0.059 0.941 43 H 0.098 0.902 44 H 0.053 0.947 45 H 0.048 0.952 46 H 0.073 0.927 47 H 0.061 0.939 48 H 0.099 0.901 49 H 0.107 0.893 50 H 0.093 0.907 51 H 0.099 0.901 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.409 -9.855 4.041 25.718 hybrid contribution -0.115 0.305 -2.198 2.222 sum -23.524 -9.550 1.842 25.455 Atomic orbital electron populations 1.21815 0.94854 1.01847 1.01882 1.21168 0.95813 0.99692 0.94861 0.91172 1.21615 0.95549 1.00641 0.97337 1.21534 0.95393 1.01283 0.97782 1.21938 1.01688 0.99243 0.94137 1.21080 0.93867 0.81620 0.99459 0.88898 1.45949 1.17025 1.10611 1.61366 1.20313 0.82411 0.89519 0.78494 1.90541 1.54120 1.48412 1.45544 1.19976 0.83145 0.88997 0.79482 1.90718 1.56216 1.46919 1.47619 1.48105 1.09130 1.09306 1.63647 1.23122 0.89063 0.91178 1.01093 1.22380 0.95055 0.92822 0.97750 1.62516 1.04710 1.00684 1.58703 1.19761 0.84458 0.97698 0.91855 1.21704 0.97710 1.46717 0.92993 0.92686 1.24951 0.95271 0.94800 0.98637 1.69927 1.01988 1.45390 1.35505 0.86712 0.77337 0.78603 0.85718 1.20275 1.21128 1.20252 1.22217 0.91061 0.96929 0.97574 1.22023 0.96884 0.81224 1.00981 1.21900 0.93513 1.02112 0.98413 0.92624 0.92584 0.92555 0.91879 0.91816 0.91795 0.91727 0.91027 0.90764 0.75233 0.91032 0.85305 0.94062 0.90221 0.94681 0.95156 0.92698 0.93885 0.90146 0.89290 0.90687 0.90062 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.19 37.16 0.34 -0.46 16 2 C -0.10 -0.61 2.55 -90.62 -0.23 -0.84 16 3 H 0.07 0.50 6.50 -51.93 -0.34 0.16 16 4 C -0.11 -0.75 5.20 -26.73 -0.14 -0.89 16 5 C -0.12 -1.01 5.77 -26.73 -0.15 -1.16 16 6 C -0.13 -1.12 5.60 -26.73 -0.15 -1.27 16 7 C 0.14 1.22 2.78 -67.93 -0.19 1.03 16 8 H 0.09 0.87 7.58 -51.93 -0.39 0.47 16 9 N -0.70 -7.32 4.22 -54.23 -0.23 -7.55 16 10 C 0.51 6.99 7.71 -11.58 -0.09 6.90 16 11 O -0.51 -7.62 12.85 5.49 0.07 -7.55 16 12 C 0.50 7.94 7.75 -11.58 -0.09 7.85 16 13 O -0.54 -9.17 15.96 5.50 0.09 -9.08 16 14 N -0.57 -9.36 3.00 -172.68 -0.52 -9.88 16 15 C 0.08 1.26 6.14 -3.36 -0.02 1.24 16 16 C 0.05 0.95 5.17 -3.46 -0.02 0.94 16 17 N -0.54 -11.42 4.83 -235.46 -1.14 -12.56 16 18 C 0.19 4.75 5.11 -4.98 -0.03 4.73 16 19 C -0.55 -15.06 7.76 -34.44 -0.27 -15.33 16 20 H 0.06 1.51 5.87 -52.49 -0.31 1.20 16 21 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 22 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 23 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 C 0.05 1.00 5.25 -3.70 -0.02 0.98 16 28 C 0.11 1.80 6.61 -3.60 -0.02 1.78 16 29 C -0.12 -0.76 4.89 -26.73 -0.13 -0.90 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.62 7.60 -51.93 -0.39 0.22 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.41 4.09 6.35 -40.82 -0.26 3.83 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.13 2.07 4.43 -54.26 -0.24 1.83 16 42 H 0.04 0.89 6.62 -51.93 -0.34 0.54 16 43 H 0.08 1.53 8.11 -51.93 -0.42 1.11 16 44 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 45 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 47 H 0.04 0.93 7.10 -51.93 -0.37 0.56 16 48 H 0.08 1.52 8.06 -51.93 -0.42 1.10 16 49 H 0.09 1.40 7.05 -51.92 -0.37 1.04 16 50 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 51 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 52 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 395.47 15.07 5.96 5.96 Total: -1.00 -30.26 395.47 -10.26 -40.51 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -8.90 Total: 2.59 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -1.30 Total: 6.34 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -1.15 Total: -55.23 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: 0.16 Total: -16.63 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.26 -10.26 -40.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602226460.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.157 kcal (2) G-P(sol) polarization free energy of solvation -30.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds