Wall clock time and date at job start Tue Mar 31 2020 21:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.43433 * 2 1 4 4 C 1.54889 * 110.60033 * 237.37706 * 2 1 3 5 5 C 1.54895 * 102.74839 * 203.32083 * 4 2 1 6 6 C 1.54269 * 104.19315 * 37.94418 * 5 4 2 7 7 H 1.09000 * 110.06956 * 95.69536 * 6 5 4 8 8 C 1.52998 * 110.02915 * 217.10365 * 6 5 4 9 9 N 1.46510 * 109.46850 * 292.16741 * 8 6 5 10 10 C 1.34780 * 119.99521 * 180.02562 * 9 8 6 11 11 O 1.21352 * 120.00294 * 0.02562 * 10 9 8 12 12 C 1.49446 * 119.99576 * 179.97438 * 10 9 8 13 13 O 1.21344 * 120.00505 * 6.48856 * 12 10 9 14 14 N 1.34779 * 119.99836 * 186.48468 * 12 10 9 15 15 C 1.47083 * 120.88146 * 178.47858 * 14 12 10 16 16 C 1.53235 * 108.52062 * 231.20763 * 15 14 12 17 17 N 1.46908 * 109.33912 * 306.16693 * 16 15 14 18 18 C 1.46902 * 110.99873 * 187.25489 * 17 16 15 19 19 C 1.50703 * 109.47008 * 170.00223 * 18 17 16 20 20 H 1.08001 * 119.99763 * 359.97438 * 19 18 17 21 21 C 1.37873 * 120.00204 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00239 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99661 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47114 * 269.99568 * 23 21 19 25 25 H 1.48500 * 109.47353 * 29.99796 * 23 21 19 26 26 H 1.48502 * 109.47009 * 149.99860 * 23 21 19 27 27 C 1.46894 * 111.26637 * 63.10680 * 17 16 15 28 28 C 1.47075 * 120.88287 * 358.49973 * 14 12 10 29 29 C 1.53874 * 106.59828 * 336.39085 * 6 5 4 30 30 H 1.09002 * 109.47641 * 297.46196 * 1 2 3 31 31 H 1.09000 * 109.47256 * 57.46161 * 1 2 3 32 32 H 1.09007 * 109.46931 * 177.46273 * 1 2 3 33 33 H 1.08993 * 110.75933 * 321.63765 * 4 2 1 34 34 H 1.09008 * 110.75475 * 84.82435 * 4 2 1 35 35 H 1.09000 * 110.48557 * 279.26312 * 5 4 2 36 36 H 1.08998 * 110.48375 * 156.62089 * 5 4 2 37 37 H 1.08999 * 109.47159 * 172.17398 * 8 6 5 38 38 H 1.08993 * 109.47509 * 52.16450 * 8 6 5 39 39 H 0.96997 * 120.00122 * 0.02562 * 9 8 6 40 40 H 1.08996 * 109.62918 * 111.49624 * 15 14 12 41 41 H 1.09000 * 109.78834 * 351.00680 * 15 14 12 42 42 H 1.08996 * 109.49516 * 186.21086 * 16 15 14 43 43 H 1.09000 * 109.51882 * 66.14104 * 16 15 14 44 44 H 1.08996 * 109.47284 * 49.99912 * 18 17 16 45 45 H 1.09004 * 109.47170 * 289.99763 * 18 17 16 46 46 H 0.97000 * 120.00073 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.49371 * 56.85376 * 27 17 16 48 48 H 1.09004 * 109.49440 * 176.93583 * 27 17 16 49 49 H 1.09001 * 109.62897 * 248.50740 * 28 14 12 50 50 H 1.09004 * 109.62991 * 9.08193 * 28 14 12 51 51 H 1.08993 * 110.03145 * 119.28980 * 29 6 5 52 52 H 1.09004 * 110.02680 * 240.71723 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0749 -0.7816 -1.2211 5 6 3.4938 -1.1947 -0.7570 6 6 3.3185 -1.5368 0.7370 7 1 3.1734 -2.6100 0.8604 8 6 4.5467 -1.0801 1.5268 9 7 5.7037 -1.8930 1.1435 10 6 6.9038 -1.6687 1.7146 11 8 7.0257 -0.7938 2.5467 12 6 8.0839 -2.4983 1.3241 13 8 7.9919 -3.2925 0.4113 14 7 9.2504 -2.3642 1.9856 15 6 10.4144 -3.1941 1.6395 16 6 10.9522 -3.8374 2.9220 17 7 11.2104 -2.7907 3.9200 18 6 11.8869 -3.3444 5.1006 19 6 12.3533 -2.2181 5.9866 20 1 12.1663 -1.1935 5.7010 21 6 13.0187 -2.4957 7.1618 22 7 13.4262 -1.5128 7.9347 23 14 13.3428 -4.2679 7.6554 24 1 12.2074 -4.7704 8.4700 25 1 13.4850 -5.1033 6.4359 26 1 14.5937 -4.3389 8.4526 27 6 9.9714 -2.0989 4.2993 28 6 9.3932 -1.3844 3.0732 29 6 2.0698 -0.7772 1.2183 30 1 -0.3634 0.4739 0.9118 31 1 -0.3634 0.5527 -0.8663 32 1 -0.3633 -1.0267 -0.0455 33 1 1.4628 -1.6609 -1.4215 34 1 2.1248 -0.1390 -2.1002 35 1 4.1915 -0.3662 -0.8794 36 1 3.8369 -2.0686 -1.3108 37 1 4.3572 -1.1982 2.5937 38 1 4.7505 -0.0320 1.3077 39 1 5.6062 -2.5926 0.4787 40 1 11.1877 -2.5711 1.1902 41 1 10.1168 -3.9722 0.9366 42 1 11.8792 -4.3670 2.7023 43 1 10.2162 -4.5396 3.3136 44 1 12.7453 -3.9364 4.7832 45 1 11.1930 -3.9779 5.6532 46 1 13.8940 -1.7081 8.7617 47 1 9.2486 -2.8251 4.6715 48 1 10.1869 -1.3677 5.0784 49 1 10.0684 -0.5874 2.7617 50 1 8.4173 -0.9659 3.3195 51 1 1.3185 -1.4818 1.5746 52 1 2.3389 -0.0832 2.0146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602245697.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:01 Heat of formation + Delta-G solvation = -58.612187 kcal Electronic energy + Delta-G solvation = -29503.016256 eV Core-core repulsion = 25502.542523 eV Total energy + Delta-G solvation = -4000.473733 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.97989 -39.46068 -38.55579 -37.67652 -35.48641 -34.30171 -32.37947 -31.85935 -30.84956 -29.81962 -28.86306 -27.13561 -25.97674 -24.65802 -23.58699 -23.07295 -21.40412 -20.83305 -20.75069 -20.05166 -19.29183 -17.59457 -17.16982 -16.78689 -16.36724 -16.22145 -15.76631 -15.37467 -14.82309 -14.65974 -14.63689 -14.49705 -14.17226 -14.03255 -13.96547 -13.67354 -13.46247 -13.39599 -13.04314 -12.77555 -12.41444 -12.36220 -12.29578 -11.70594 -11.57211 -11.51138 -11.33456 -11.26834 -11.18651 -11.10941 -11.00923 -10.88823 -10.80998 -10.75800 -10.60760 -10.33312 -9.85074 -9.50577 -9.33621 -9.01827 -8.63628 -8.59315 -7.45985 -6.07275 -4.05040 1.36327 2.25517 3.15413 3.26654 3.34538 3.36115 3.43969 4.03557 4.09319 4.19513 4.29094 4.39961 4.60897 4.69324 4.78028 4.93190 5.00616 5.06124 5.14920 5.16904 5.22968 5.24518 5.28952 5.36791 5.37547 5.40238 5.52095 5.54118 5.57956 5.59984 5.61746 5.72323 5.74052 5.79212 5.80446 5.91156 5.95425 5.98743 6.11434 6.24220 6.43685 6.49616 6.59815 6.80947 6.89465 6.94396 7.32228 7.54981 7.68320 7.82774 7.94435 7.97461 8.61853 9.00692 9.54111 11.05618 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022910 B = 0.001992 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.891142 B =14054.913805 C =14745.630222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.075 0.925 4 C -0.120 4.120 5 C -0.124 4.124 6 C -0.105 4.105 7 H 0.081 0.919 8 C 0.123 3.877 9 N -0.700 5.700 10 C 0.510 3.490 11 O -0.504 6.504 12 C 0.503 3.497 13 O -0.538 6.538 14 N -0.569 5.569 15 C 0.114 3.886 16 C 0.039 3.961 17 N -0.528 5.528 18 C 0.162 3.838 19 C -0.511 4.511 20 H 0.082 0.918 21 C 0.069 3.931 22 N -0.898 5.898 23 Si 0.876 3.124 24 H -0.278 1.278 25 H -0.268 1.268 26 H -0.285 1.285 27 C 0.051 3.949 28 C 0.056 3.944 29 C -0.113 4.113 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.412 0.588 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.027 0.973 44 H 0.030 0.970 45 H -0.016 1.016 46 H 0.264 0.736 47 H 0.023 0.977 48 H 0.104 0.896 49 H 0.076 0.924 50 H 0.150 0.850 51 H 0.070 0.930 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.310 0.116 -18.067 30.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.093 0.907 4 C -0.158 4.158 5 C -0.162 4.162 6 C -0.124 4.124 7 H 0.099 0.901 8 C 0.000 4.000 9 N -0.353 5.353 10 C 0.292 3.708 11 O -0.381 6.381 12 C 0.285 3.715 13 O -0.417 6.417 14 N -0.302 5.302 15 C -0.009 4.009 16 C -0.090 4.090 17 N -0.252 5.252 18 C 0.036 3.964 19 C -0.549 4.549 20 H 0.100 0.900 21 C -0.133 4.133 22 N -0.537 5.537 23 Si 0.703 3.297 24 H -0.204 1.204 25 H -0.192 1.192 26 H -0.211 1.211 27 C -0.078 4.078 28 C -0.064 4.064 29 C -0.151 4.151 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.248 0.752 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.045 0.955 44 H 0.048 0.952 45 H 0.001 0.999 46 H 0.074 0.926 47 H 0.041 0.959 48 H 0.122 0.878 49 H 0.094 0.906 50 H 0.166 0.834 51 H 0.088 0.912 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.845 0.714 -17.967 29.865 hybrid contribution -0.106 -1.904 0.580 1.993 sum -23.951 -1.190 -17.387 29.621 Atomic orbital electron populations 1.21806 0.94949 1.01796 1.01688 1.21986 0.95520 0.99439 0.94777 0.90668 1.22567 0.95892 0.99826 0.97478 1.22496 0.97487 1.01631 0.94541 1.22045 0.94028 1.00963 0.95398 0.90085 1.21696 0.83485 0.95297 0.99555 1.45804 1.08152 1.38021 1.43361 1.20307 0.84457 0.84305 0.81713 1.90402 1.82985 1.32992 1.31694 1.19910 0.84179 0.83937 0.83473 1.90717 1.83761 1.37422 1.29766 1.48195 1.10100 1.37566 1.34291 1.21909 0.86508 0.94938 0.97501 1.22442 0.99915 0.93752 0.92938 1.61963 1.22366 1.26998 1.13908 1.20191 0.93076 0.95821 0.87309 1.21016 1.36295 0.94068 1.03522 0.89998 1.24894 0.95306 0.96850 0.96231 1.69888 1.39411 1.31238 1.13192 0.86862 0.77985 0.85942 0.78918 1.20394 1.19246 1.21120 1.22402 0.90002 0.98666 0.96694 1.23487 1.06838 0.90571 0.85547 1.22207 0.95980 0.98967 0.97963 0.92626 0.92719 0.92630 0.91395 0.91554 0.91094 0.91355 0.90757 0.90652 0.75171 0.90127 0.89113 0.89805 0.95463 0.95213 0.99854 0.92628 0.95911 0.87798 0.90607 0.83357 0.91172 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.12 37.16 0.34 -0.33 16 2 C -0.10 -0.51 3.45 -88.96 -0.31 -0.81 16 3 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 4 C -0.12 -0.61 6.33 -24.74 -0.16 -0.77 16 5 C -0.12 -0.70 6.08 -25.07 -0.15 -0.85 16 6 C -0.11 -0.61 2.96 -89.50 -0.27 -0.87 16 7 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 8 C 0.12 0.96 4.73 -4.04 -0.02 0.94 16 9 N -0.70 -6.78 5.39 -60.73 -0.33 -7.11 16 10 C 0.51 6.68 7.81 -11.59 -0.09 6.59 16 11 O -0.50 -7.50 13.03 5.49 0.07 -7.42 16 12 C 0.50 7.45 7.77 -11.59 -0.09 7.36 16 13 O -0.54 -8.48 15.95 5.50 0.09 -8.39 16 14 N -0.57 -8.91 3.01 -172.98 -0.52 -9.43 16 15 C 0.11 1.71 6.59 -3.60 -0.02 1.69 16 16 C 0.04 0.66 5.62 -3.70 -0.02 0.64 16 17 N -0.53 -10.93 4.62 -235.76 -1.09 -12.02 16 18 C 0.16 3.90 3.79 -4.97 -0.02 3.88 16 19 C -0.51 -14.33 8.96 -34.44 -0.31 -14.63 16 20 H 0.08 2.49 7.37 -52.49 -0.39 2.10 16 21 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 22 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 23 Si 0.88 21.41 27.47 -169.99 -4.67 16.75 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 C 0.05 0.99 5.46 -3.70 -0.02 0.97 16 28 C 0.06 0.93 6.36 -3.61 -0.02 0.90 16 29 C -0.11 -0.60 6.03 -25.61 -0.15 -0.75 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.05 0.25 8.12 -51.92 -0.42 -0.18 16 33 H 0.07 0.34 8.05 -51.93 -0.42 -0.08 16 34 H 0.07 0.33 8.14 -51.92 -0.42 -0.10 16 35 H 0.07 0.45 7.76 -51.93 -0.40 0.05 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.62 8.00 -51.93 -0.42 0.21 16 39 H 0.41 3.53 7.84 -40.82 -0.32 3.21 16 40 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.09 1.28 7.08 -51.93 -0.37 0.91 16 42 H 0.08 1.33 7.99 -51.93 -0.41 0.92 16 43 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.03 0.72 7.03 -51.93 -0.36 0.36 16 45 H -0.02 -0.39 7.55 -51.93 -0.39 -0.79 16 46 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.10 2.21 6.67 -51.93 -0.35 1.87 16 49 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 50 H 0.15 2.41 3.92 -56.54 -0.22 2.19 16 51 H 0.07 0.35 7.84 -51.93 -0.41 -0.06 16 52 H 0.07 0.38 7.67 -51.93 -0.40 -0.02 16 LS Contribution 401.49 15.07 6.05 6.05 Total: -1.00 -31.70 401.49 -10.13 -41.83 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -9.10 Total: 0.45 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: -1.41 Total: 5.82 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -1.16 Total: -55.08 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: 0.16 Total: -15.82 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.70 -10.13 -41.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602245697.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.786 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds