Wall clock time and date at job start Tue Mar 31 2020 20:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.54056 * 2 1 4 4 C 1.54260 * 110.48726 * 237.38337 * 2 1 3 5 5 C 1.53872 * 106.64060 * 217.73976 * 4 2 1 6 6 C 1.54262 * 106.60123 * 359.97252 * 5 4 2 7 7 C 1.54891 * 104.19461 * 23.61303 * 6 5 4 8 8 H 1.08993 * 110.75696 * 80.37101 * 7 6 5 9 9 C 1.53001 * 110.75999 * 203.55957 * 7 6 5 10 10 N 1.46503 * 109.46862 * 293.54815 * 9 7 6 11 11 C 1.34779 * 119.99672 * 179.97438 * 10 9 7 12 12 O 1.21341 * 120.00270 * 359.97438 * 11 10 9 13 13 C 1.49447 * 119.99528 * 179.97438 * 11 10 9 14 14 O 1.21354 * 120.00356 * 6.37819 * 13 11 10 15 15 N 1.34780 * 119.99704 * 186.37845 * 13 11 10 16 16 C 1.47069 * 120.88143 * 7.93926 * 15 13 11 17 17 C 1.53700 * 108.28114 * 128.75467 * 16 15 13 18 18 N 1.46896 * 109.25514 * 54.07564 * 17 16 15 19 19 C 1.46901 * 110.99850 * 172.61176 * 18 17 16 20 20 C 1.50694 * 109.47157 * 59.48682 * 19 18 17 21 21 H 1.07999 * 120.00173 * 355.66880 * 20 19 18 22 22 C 1.37881 * 120.00199 * 175.67075 * 20 19 18 23 23 N 1.31515 * 120.00148 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99703 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47218 * 90.00294 * 24 22 20 26 26 H 1.48502 * 109.46771 * 210.00263 * 24 22 20 27 27 H 1.48503 * 109.47100 * 330.00032 * 24 22 20 28 28 C 1.46892 * 111.27430 * 296.76396 * 18 17 16 29 29 C 1.47083 * 120.87828 * 188.21463 * 15 13 11 30 30 H 1.08998 * 109.47086 * 181.16327 * 1 2 3 31 31 H 1.09007 * 109.46984 * 301.16143 * 1 2 3 32 32 H 1.09000 * 109.46642 * 61.15921 * 1 2 3 33 33 H 1.08996 * 110.03332 * 98.42175 * 4 2 1 34 34 H 1.09006 * 110.02952 * 337.04613 * 4 2 1 35 35 H 1.08993 * 110.03586 * 119.26315 * 5 4 2 36 36 H 1.09005 * 110.02799 * 240.64000 * 5 4 2 37 37 H 1.08999 * 110.48968 * 142.29036 * 6 5 4 38 38 H 1.09001 * 110.48971 * 264.93751 * 6 5 4 39 39 H 1.08998 * 109.47037 * 53.54405 * 9 7 6 40 40 H 1.08994 * 109.47463 * 173.54296 * 9 7 6 41 41 H 0.97000 * 119.99778 * 359.97438 * 10 9 7 42 42 H 1.08999 * 109.62944 * 248.51819 * 16 15 13 43 43 H 1.08999 * 109.62986 * 9.10043 * 16 15 13 44 44 H 1.09000 * 109.64129 * 294.08226 * 17 16 15 45 45 H 1.08992 * 109.44757 * 173.95980 * 17 16 15 46 46 H 1.09004 * 109.46951 * 179.48803 * 19 18 17 47 47 H 1.09003 * 109.47013 * 299.48162 * 19 18 17 48 48 H 0.96996 * 119.99649 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.49352 * 303.14374 * 28 18 17 50 50 H 1.09001 * 109.51997 * 183.07557 * 28 18 17 51 51 H 1.09001 * 109.63424 * 350.89809 * 29 15 13 52 52 H 1.08996 * 109.62935 * 111.28375 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0700 -0.7789 -1.2171 5 6 3.3163 -1.5415 -0.7347 6 6 3.4916 -1.1993 0.7592 7 6 2.0735 -0.7825 1.2223 8 1 1.4590 -1.6601 1.4226 9 6 2.1490 0.1173 2.4575 10 7 2.6676 -0.6522 3.5911 11 6 2.8216 -0.0612 4.7926 12 8 2.5312 1.1083 4.9352 13 6 3.3501 -0.8463 5.9492 14 8 3.7489 -1.9801 5.7814 15 7 3.3837 -0.2951 7.1787 16 6 2.7499 1.0060 7.4402 17 6 1.8304 0.8572 8.6628 18 7 2.6017 0.3059 9.7849 19 6 1.8087 0.3106 11.0215 20 6 0.5649 -0.5169 10.8238 21 1 0.3464 -0.9404 9.8546 22 6 -0.2942 -0.7335 11.8802 23 7 -1.3799 -1.4552 11.7076 24 14 0.0841 -0.0016 13.5568 25 1 -0.5289 1.3472 13.6579 26 1 -0.4732 -0.8793 14.6171 27 1 1.5550 0.1090 13.7282 28 6 3.0944 -1.0441 9.4806 29 6 4.0604 -0.9761 8.2930 30 1 -0.3633 -1.0274 0.0209 31 1 -0.3633 0.5318 0.8794 32 1 -0.3632 0.4957 -0.9002 33 1 2.3411 -0.0859 -2.0135 34 1 1.3172 -1.4817 -1.5745 35 1 3.1682 -2.6144 -0.8572 36 1 4.1923 -1.2191 -1.2977 37 1 3.8322 -2.0738 1.3135 38 1 4.1912 -0.3725 0.8817 39 1 2.8128 0.9577 2.2547 40 1 1.1532 0.4904 2.6966 41 1 2.9001 -1.5870 3.4770 42 1 3.5173 1.7527 7.6442 43 1 2.1624 1.3080 6.5732 44 1 1.0070 0.1848 8.4223 45 1 1.4335 1.8339 8.9394 46 1 2.4004 -0.1111 11.8341 47 1 1.5285 1.3344 11.2694 48 1 -1.9841 -1.6079 12.4509 49 1 2.2533 -1.6901 9.2287 50 1 3.6145 -1.4465 10.3499 51 1 4.3398 -1.9852 7.9900 52 1 4.9533 -0.4182 8.5750 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602246449.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:39 Heat of formation + Delta-G solvation = -64.432108 kcal Electronic energy + Delta-G solvation = -29870.277814 eV Core-core repulsion = 25869.551710 eV Total energy + Delta-G solvation = -4000.726104 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -40.86028 -39.41640 -38.47627 -37.59013 -35.28758 -34.21257 -32.28619 -31.70138 -30.72357 -30.34218 -28.76008 -26.56618 -25.79479 -24.74397 -23.51083 -22.91069 -21.69375 -20.80018 -20.59410 -19.99818 -19.20037 -17.62826 -16.96993 -16.77496 -16.18136 -16.03834 -15.58018 -15.30521 -14.77099 -14.63986 -14.55295 -14.46858 -14.24514 -14.13455 -13.81052 -13.62992 -13.47610 -13.26112 -12.75790 -12.46477 -12.43296 -12.31438 -12.19866 -11.62735 -11.53871 -11.35903 -11.30747 -11.18026 -11.14501 -11.01505 -10.94631 -10.85832 -10.77664 -10.61894 -10.45167 -10.32985 -9.99139 -9.56735 -9.42059 -9.04935 -8.63453 -8.53970 -7.29266 -6.13761 -4.14508 1.46224 2.35294 3.24641 3.25536 3.33250 3.36096 3.51813 4.07865 4.15245 4.24260 4.36262 4.38164 4.78578 4.86225 4.87478 4.91372 5.03887 5.09760 5.15372 5.18840 5.19849 5.31064 5.37551 5.47894 5.49544 5.50544 5.60022 5.61033 5.63505 5.72549 5.77504 5.78190 5.83825 5.87960 5.92696 5.97953 6.01769 6.05328 6.28976 6.43813 6.56026 6.63206 6.72758 6.88875 6.99538 7.02053 7.38806 7.51058 7.73948 7.95005 7.99492 8.04319 8.40145 8.88000 9.48380 10.99101 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019904 B = 0.002198 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.405421 B =12734.446851 C =13349.588690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 H 0.078 0.922 4 C -0.120 4.120 5 C -0.125 4.125 6 C -0.123 4.123 7 C -0.104 4.104 8 H 0.086 0.914 9 C 0.125 3.875 10 N -0.701 5.701 11 C 0.510 3.490 12 O -0.510 6.510 13 C 0.504 3.496 14 O -0.535 6.535 15 N -0.571 5.571 16 C 0.078 3.922 17 C 0.047 3.953 18 N -0.535 5.535 19 C 0.153 3.847 20 C -0.553 4.553 21 H 0.074 0.926 22 C 0.072 3.928 23 N -0.898 5.898 24 Si 0.880 3.120 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.263 1.263 28 C 0.049 3.951 29 C 0.112 3.888 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.412 0.588 42 H 0.071 0.929 43 H 0.131 0.869 44 H 0.048 0.952 45 H 0.080 0.920 46 H 0.032 0.968 47 H 0.027 0.973 48 H 0.264 0.736 49 H 0.049 0.951 50 H 0.080 0.920 51 H 0.090 0.910 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.264 2.425 -24.150 25.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 H 0.097 0.903 4 C -0.158 4.158 5 C -0.162 4.162 6 C -0.160 4.160 7 C -0.123 4.123 8 H 0.105 0.895 9 C 0.002 3.998 10 N -0.354 5.354 11 C 0.292 3.708 12 O -0.387 6.387 13 C 0.286 3.714 14 O -0.413 6.413 15 N -0.303 5.303 16 C -0.044 4.044 17 C -0.082 4.082 18 N -0.259 5.259 19 C 0.026 3.974 20 C -0.592 4.592 21 H 0.092 0.908 22 C -0.131 4.131 23 N -0.536 5.536 24 Si 0.707 3.293 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.188 1.188 28 C -0.080 4.080 29 C -0.010 4.010 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.248 0.752 42 H 0.089 0.911 43 H 0.148 0.852 44 H 0.066 0.934 45 H 0.098 0.902 46 H 0.050 0.950 47 H 0.045 0.955 48 H 0.074 0.926 49 H 0.068 0.932 50 H 0.098 0.902 51 H 0.109 0.891 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.516 2.908 -23.962 25.946 hybrid contribution -0.670 -0.652 0.920 1.312 sum 8.846 2.256 -23.042 24.784 Atomic orbital electron populations 1.21852 0.94595 1.02078 1.01992 1.21936 0.95756 0.99329 0.93549 0.90327 1.22209 0.97315 0.98874 0.97405 1.22110 0.97977 1.00284 0.95864 1.22461 0.96227 1.01552 0.95793 1.22500 0.97514 0.98688 0.93564 0.89533 1.21493 0.99998 0.94240 0.84042 1.45778 1.64792 1.15801 1.09027 1.20283 0.78876 0.87354 0.84303 1.90543 1.49308 1.16449 1.82363 1.19941 0.80699 0.86522 0.84252 1.90723 1.48754 1.17423 1.84360 1.48082 1.52409 1.22089 1.07741 1.23105 0.97526 0.82762 1.00984 1.22416 0.94756 1.00821 0.90218 1.62437 1.38776 1.20381 1.04285 1.20225 0.92282 0.96911 0.87982 1.21680 1.06076 1.32864 0.98535 0.90847 1.24988 0.94653 0.94441 0.99009 1.69930 1.12474 1.39015 1.32188 0.86782 0.79301 0.79285 0.83938 1.20158 1.21313 1.18769 1.22249 0.97612 0.91942 0.96216 1.21997 0.95416 0.98198 0.85385 0.92466 0.92292 0.92526 0.91812 0.91621 0.91790 0.91840 0.91340 0.91226 0.90858 0.90730 0.75166 0.91055 0.85196 0.93388 0.90175 0.95037 0.95520 0.92641 0.93233 0.90170 0.89134 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.11 37.16 0.34 -0.54 16 2 C -0.09 -0.51 2.92 -88.92 -0.26 -0.77 16 3 H 0.08 0.47 8.05 -51.93 -0.42 0.05 16 4 C -0.12 -0.66 6.37 -25.62 -0.16 -0.82 16 5 C -0.12 -0.70 6.80 -25.62 -0.17 -0.88 16 6 C -0.12 -0.78 5.97 -25.07 -0.15 -0.93 16 7 C -0.10 -0.69 2.38 -88.58 -0.21 -0.90 16 8 H 0.09 0.59 8.06 -51.93 -0.42 0.17 16 9 C 0.13 1.08 5.12 -4.04 -0.02 1.06 16 10 N -0.70 -7.47 5.39 -60.73 -0.33 -7.80 16 11 C 0.51 7.12 7.75 -11.59 -0.09 7.03 16 12 O -0.51 -7.83 13.19 5.50 0.07 -7.76 16 13 C 0.50 8.03 7.75 -11.58 -0.09 7.94 16 14 O -0.53 -9.19 15.96 5.49 0.09 -9.10 16 15 N -0.57 -9.38 3.00 -172.69 -0.52 -9.90 16 16 C 0.08 1.26 6.14 -3.37 -0.02 1.24 16 17 C 0.05 0.90 5.17 -3.46 -0.02 0.89 16 18 N -0.53 -10.90 4.83 -235.47 -1.14 -12.04 16 19 C 0.15 3.59 4.20 -4.98 -0.02 3.57 16 20 C -0.55 -15.22 8.32 -34.44 -0.29 -15.50 16 21 H 0.07 2.22 6.12 -52.49 -0.32 1.90 16 22 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 23 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 24 Si 0.88 21.19 27.56 -169.99 -4.68 16.50 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.26 -6.07 6.42 56.52 0.36 -5.70 16 28 C 0.05 0.93 5.24 -3.70 -0.02 0.91 16 29 C 0.11 1.80 6.61 -3.60 -0.02 1.77 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.37 8.02 -51.93 -0.42 -0.04 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.35 7.84 -51.93 -0.41 -0.06 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.46 8.02 -51.93 -0.42 0.05 16 39 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 40 H 0.07 0.69 8.02 -51.93 -0.42 0.27 16 41 H 0.41 4.02 7.82 -40.82 -0.32 3.70 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.13 2.11 4.43 -54.27 -0.24 1.87 16 44 H 0.05 1.06 6.63 -51.93 -0.34 0.72 16 45 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 46 H 0.03 0.75 6.82 -51.93 -0.35 0.39 16 47 H 0.03 0.63 7.79 -51.93 -0.40 0.22 16 48 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 49 H 0.05 1.09 7.10 -51.93 -0.37 0.72 16 50 H 0.08 1.45 8.06 -51.93 -0.42 1.03 16 51 H 0.09 1.42 7.05 -51.93 -0.37 1.05 16 52 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 399.30 15.07 6.02 6.02 Total: -1.00 -31.47 399.30 -10.05 -41.51 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -9.03 Total: 3.04 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -1.31 Total: 6.02 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -1.21 Total: -56.24 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.16 Total: -16.86 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.68 Total: 16.50 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.47 -10.05 -41.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602246449.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.919 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds